Experiment: Chloramphenicol 0.001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS16615 and BWI76_RS16620 are separated by 198 nucleotides BWI76_RS16620 and BWI76_RS16625 are separated by 373 nucleotides
BWI76_RS16615: BWI76_RS16615 - FAD/NAD(P) binding domain-containing protein, at 3,439,840 to 3,441,450
_RS16615
BWI76_RS16620: BWI76_RS16620 - TIGR00156 family protein, at 3,441,649 to 3,442,041
_RS16620
BWI76_RS16625: BWI76_RS16625 - putative oxidoreductase, at 3,442,415 to 3,443,299
_RS16625
Position (kb)
3441
3442
3443 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 3440.669 kb on + strand, within BWI76_RS16615 at 3440.757 kb on - strand, within BWI76_RS16615 at 3440.907 kb on + strand, within BWI76_RS16615 at 3440.907 kb on + strand, within BWI76_RS16615 at 3440.907 kb on + strand, within BWI76_RS16615 at 3441.281 kb on + strand, within BWI76_RS16615 at 3441.281 kb on + strand, within BWI76_RS16615 at 3441.281 kb on + strand, within BWI76_RS16615 at 3441.289 kb on - strand, within BWI76_RS16615 at 3441.289 kb on - strand, within BWI76_RS16615 at 3441.393 kb on + strand at 3441.401 kb on - strand at 3441.401 kb on - strand at 3441.590 kb on - strand at 3441.633 kb on + strand at 3441.721 kb on + strand, within BWI76_RS16620 at 3441.731 kb on + strand, within BWI76_RS16620 at 3441.764 kb on + strand, within BWI76_RS16620 at 3441.772 kb on - strand, within BWI76_RS16620 at 3441.774 kb on + strand, within BWI76_RS16620 at 3441.781 kb on + strand, within BWI76_RS16620 at 3441.782 kb on - strand, within BWI76_RS16620 at 3441.801 kb on + strand, within BWI76_RS16620 at 3441.833 kb on + strand, within BWI76_RS16620 at 3441.865 kb on + strand, within BWI76_RS16620 at 3441.888 kb on + strand, within BWI76_RS16620 at 3441.890 kb on + strand, within BWI76_RS16620 at 3441.890 kb on + strand, within BWI76_RS16620 at 3441.890 kb on + strand, within BWI76_RS16620 at 3441.890 kb on + strand, within BWI76_RS16620 at 3441.890 kb on + strand, within BWI76_RS16620 at 3441.890 kb on + strand, within BWI76_RS16620 at 3441.890 kb on + strand, within BWI76_RS16620 at 3441.890 kb on + strand, within BWI76_RS16620 at 3441.890 kb on + strand, within BWI76_RS16620 at 3441.890 kb on + strand, within BWI76_RS16620 at 3441.890 kb on + strand, within BWI76_RS16620 at 3441.896 kb on - strand, within BWI76_RS16620 at 3441.898 kb on - strand, within BWI76_RS16620 at 3441.898 kb on - strand, within BWI76_RS16620 at 3441.898 kb on - strand, within BWI76_RS16620 at 3441.898 kb on - strand, within BWI76_RS16620 at 3441.973 kb on + strand, within BWI76_RS16620 at 3441.978 kb on + strand at 3442.049 kb on + strand at 3442.052 kb on - strand at 3442.052 kb on - strand at 3442.057 kb on - strand at 3442.058 kb on + strand at 3442.066 kb on - strand at 3442.215 kb on - strand at 3442.262 kb on - strand at 3442.385 kb on + strand at 3442.385 kb on + strand at 3442.408 kb on + strand at 3442.416 kb on - strand at 3442.416 kb on - strand at 3442.457 kb on - strand at 3442.526 kb on + strand, within BWI76_RS16625 at 3442.526 kb on + strand, within BWI76_RS16625 at 3442.592 kb on + strand, within BWI76_RS16625 at 3442.729 kb on + strand, within BWI76_RS16625 at 3442.776 kb on - strand, within BWI76_RS16625 at 3443.007 kb on + strand, within BWI76_RS16625
Per-strain Table
Position Strand Gene LocusTag Fraction Chloramphenicol 0.001 mg/ml remove 3,440,669 + BWI76_RS16615 0.51 -0.2 3,440,757 - BWI76_RS16615 0.57 -1.8 3,440,907 + BWI76_RS16615 0.66 -0.2 3,440,907 + BWI76_RS16615 0.66 +1.0 3,440,907 + BWI76_RS16615 0.66 +0.1 3,441,281 + BWI76_RS16615 0.89 +0.3 3,441,281 + BWI76_RS16615 0.89 -0.3 3,441,281 + BWI76_RS16615 0.89 +0.7 3,441,289 - BWI76_RS16615 0.90 -0.8 3,441,289 - BWI76_RS16615 0.90 +0.6 3,441,393 + -0.6 3,441,401 - -0.2 3,441,401 - -0.3 3,441,590 - +0.1 3,441,633 + -0.0 3,441,721 + BWI76_RS16620 0.18 +0.8 3,441,731 + BWI76_RS16620 0.21 -0.7 3,441,764 + BWI76_RS16620 0.29 -1.6 3,441,772 - BWI76_RS16620 0.31 +0.2 3,441,774 + BWI76_RS16620 0.32 +1.3 3,441,781 + BWI76_RS16620 0.34 +0.1 3,441,782 - BWI76_RS16620 0.34 -0.9 3,441,801 + BWI76_RS16620 0.39 -0.2 3,441,833 + BWI76_RS16620 0.47 -0.9 3,441,865 + BWI76_RS16620 0.55 +0.2 3,441,888 + BWI76_RS16620 0.61 -0.0 3,441,890 + BWI76_RS16620 0.61 -0.8 3,441,890 + BWI76_RS16620 0.61 -0.3 3,441,890 + BWI76_RS16620 0.61 +1.2 3,441,890 + BWI76_RS16620 0.61 +1.2 3,441,890 + BWI76_RS16620 0.61 +0.1 3,441,890 + BWI76_RS16620 0.61 +0.4 3,441,890 + BWI76_RS16620 0.61 -0.0 3,441,890 + BWI76_RS16620 0.61 +0.5 3,441,890 + BWI76_RS16620 0.61 -0.2 3,441,890 + BWI76_RS16620 0.61 -0.9 3,441,890 + BWI76_RS16620 0.61 -1.4 3,441,896 - BWI76_RS16620 0.63 -0.2 3,441,898 - BWI76_RS16620 0.63 +0.1 3,441,898 - BWI76_RS16620 0.63 -0.2 3,441,898 - BWI76_RS16620 0.63 +2.0 3,441,898 - BWI76_RS16620 0.63 +1.8 3,441,973 + BWI76_RS16620 0.82 -0.2 3,441,978 + +0.8 3,442,049 + -0.5 3,442,052 - +0.2 3,442,052 - +0.3 3,442,057 - +0.2 3,442,058 + -0.6 3,442,066 - +1.8 3,442,215 - -0.3 3,442,262 - -1.5 3,442,385 + +2.2 3,442,385 + -0.4 3,442,408 + +1.2 3,442,416 - -0.3 3,442,416 - +2.8 3,442,457 - +0.3 3,442,526 + BWI76_RS16625 0.13 +0.6 3,442,526 + BWI76_RS16625 0.13 +0.0 3,442,592 + BWI76_RS16625 0.20 +0.3 3,442,729 + BWI76_RS16625 0.35 -0.7 3,442,776 - BWI76_RS16625 0.41 -0.1 3,443,007 + BWI76_RS16625 0.67 +2.5
Or see this region's nucleotide sequence