Experiment: Chloramphenicol 0.001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS16525 and BWI76_RS16530 are separated by 31 nucleotides BWI76_RS16530 and BWI76_RS16535 are separated by 230 nucleotides BWI76_RS16535 and BWI76_RS16540 are separated by 197 nucleotides BWI76_RS16540 and BWI76_RS16545 are separated by 4 nucleotides BWI76_RS16545 and BWI76_RS16550 are separated by 4 nucleotides BWI76_RS16550 and BWI76_RS16555 are separated by 442 nucleotides
BWI76_RS16525: BWI76_RS16525 - cyclopropane-fatty-acyl-phospholipid synthase, at 3,426,052 to 3,427,203
_RS16525
BWI76_RS16530: BWI76_RS16530 - riboflavin synthase subunit alpha, at 3,427,235 to 3,427,876
_RS16530
BWI76_RS16535: BWI76_RS16535 - MATE family efflux transporter, at 3,428,107 to 3,429,480
_RS16535
BWI76_RS16540: BWI76_RS16540 - tRNA-Val, at 3,429,678 to 3,429,754
_RS16540
BWI76_RS16545: BWI76_RS16545 - tRNA-Val, at 3,429,759 to 3,429,835
_RS16545
BWI76_RS16550: BWI76_RS16550 - tRNA-Val, at 3,429,840 to 3,429,916
_RS16550
BWI76_RS16555: BWI76_RS16555 - hypothetical protein, at 3,430,359 to 3,430,544
_RS16555
Position (kb)
3428
3429
3430 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 3427.174 kb on + strand at 3427.186 kb on - strand at 3427.999 kb on + strand at 3428.019 kb on - strand at 3428.091 kb on + strand at 3428.091 kb on + strand at 3428.148 kb on + strand at 3428.176 kb on + strand at 3428.368 kb on - strand, within BWI76_RS16535 at 3428.432 kb on - strand, within BWI76_RS16535 at 3428.508 kb on + strand, within BWI76_RS16535 at 3428.741 kb on - strand, within BWI76_RS16535 at 3428.879 kb on - strand, within BWI76_RS16535 at 3429.214 kb on + strand, within BWI76_RS16535 at 3429.301 kb on - strand, within BWI76_RS16535 at 3429.311 kb on + strand, within BWI76_RS16535 at 3429.364 kb on + strand at 3429.446 kb on - strand at 3429.857 kb on + strand, within BWI76_RS16550 at 3429.857 kb on + strand, within BWI76_RS16550 at 3429.864 kb on + strand, within BWI76_RS16550 at 3429.874 kb on + strand, within BWI76_RS16550 at 3429.878 kb on + strand, within BWI76_RS16550 at 3429.909 kb on + strand at 3430.218 kb on - strand at 3430.272 kb on - strand at 3430.336 kb on + strand at 3430.336 kb on + strand at 3430.368 kb on + strand at 3430.424 kb on + strand, within BWI76_RS16555 at 3430.424 kb on + strand, within BWI76_RS16555 at 3430.424 kb on + strand, within BWI76_RS16555 at 3430.433 kb on - strand, within BWI76_RS16555 at 3430.434 kb on + strand, within BWI76_RS16555 at 3430.434 kb on + strand, within BWI76_RS16555 at 3430.434 kb on + strand, within BWI76_RS16555 at 3430.434 kb on + strand at 3430.439 kb on + strand, within BWI76_RS16555 at 3430.439 kb on + strand, within BWI76_RS16555 at 3430.444 kb on + strand, within BWI76_RS16555 at 3430.444 kb on + strand, within BWI76_RS16555
Per-strain Table
Position Strand Gene LocusTag Fraction Chloramphenicol 0.001 mg/ml remove 3,427,174 + +0.1 3,427,186 - +3.0 3,427,999 + +1.1 3,428,019 - -0.4 3,428,091 + -1.0 3,428,091 + -0.1 3,428,148 + -0.6 3,428,176 + +0.2 3,428,368 - BWI76_RS16535 0.19 +0.3 3,428,432 - BWI76_RS16535 0.24 +1.2 3,428,508 + BWI76_RS16535 0.29 -0.4 3,428,741 - BWI76_RS16535 0.46 +1.2 3,428,879 - BWI76_RS16535 0.56 +0.3 3,429,214 + BWI76_RS16535 0.81 +0.9 3,429,301 - BWI76_RS16535 0.87 -1.1 3,429,311 + BWI76_RS16535 0.88 +0.2 3,429,364 + +0.4 3,429,446 - -2.8 3,429,857 + BWI76_RS16550 0.22 -0.7 3,429,857 + BWI76_RS16550 0.22 +0.5 3,429,864 + BWI76_RS16550 0.31 -0.5 3,429,874 + BWI76_RS16550 0.44 -0.2 3,429,878 + BWI76_RS16550 0.49 +0.4 3,429,909 + -1.2 3,430,218 - +1.2 3,430,272 - +0.5 3,430,336 + -0.8 3,430,336 + +0.8 3,430,368 + +1.2 3,430,424 + BWI76_RS16555 0.35 -1.6 3,430,424 + BWI76_RS16555 0.35 +1.0 3,430,424 + BWI76_RS16555 0.35 +0.7 3,430,433 - BWI76_RS16555 0.40 +0.2 3,430,434 + BWI76_RS16555 0.40 +1.0 3,430,434 + BWI76_RS16555 0.40 +0.0 3,430,434 + BWI76_RS16555 0.40 +0.4 3,430,434 + +1.2 3,430,439 + BWI76_RS16555 0.43 -0.4 3,430,439 + BWI76_RS16555 0.43 -1.8 3,430,444 + BWI76_RS16555 0.46 +0.5 3,430,444 + BWI76_RS16555 0.46 +0.0
Or see this region's nucleotide sequence