Experiment: Chloramphenicol 0.001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS15755 and BWI76_RS15760 overlap by 4 nucleotides BWI76_RS15760 and BWI76_RS15765 overlap by 17 nucleotides BWI76_RS15765 and BWI76_RS15770 overlap by 4 nucleotides BWI76_RS15770 and BWI76_RS15775 overlap by 4 nucleotides BWI76_RS15775 and BWI76_RS15780 are separated by 48 nucleotides
BWI76_RS15755: BWI76_RS15755 - hypothetical protein, at 3,282,451 to 3,282,711
_RS15755
BWI76_RS15760: BWI76_RS15760 - hypothetical protein, at 3,282,708 to 3,282,899
_RS15760
BWI76_RS15765: BWI76_RS15765 - hypothetical protein, at 3,282,883 to 3,283,599
_RS15765
BWI76_RS15770: BWI76_RS15770 - hypothetical protein, at 3,283,596 to 3,283,901
_RS15770
BWI76_RS15775: BWI76_RS15775 - replication protein, at 3,283,898 to 3,284,224
_RS15775
BWI76_RS15780: BWI76_RS15780 - hypothetical protein, at 3,284,273 to 3,285,513
_RS15780
Position (kb)
3283
3284 Strain fitness (log2 ratio)
-1
0
1
2 at 3282.604 kb on - strand, within BWI76_RS15755 at 3282.604 kb on - strand, within BWI76_RS15755 at 3282.604 kb on - strand, within BWI76_RS15755 at 3282.604 kb on - strand, within BWI76_RS15755 at 3282.606 kb on - strand, within BWI76_RS15755 at 3282.654 kb on + strand, within BWI76_RS15755 at 3282.687 kb on + strand at 3282.729 kb on - strand, within BWI76_RS15760 at 3282.890 kb on + strand at 3282.928 kb on - strand at 3283.036 kb on - strand, within BWI76_RS15765 at 3283.144 kb on + strand, within BWI76_RS15765 at 3283.201 kb on - strand, within BWI76_RS15765 at 3283.292 kb on + strand, within BWI76_RS15765 at 3283.733 kb on - strand, within BWI76_RS15770 at 3283.740 kb on - strand, within BWI76_RS15770 at 3283.773 kb on - strand, within BWI76_RS15770 at 3283.804 kb on - strand, within BWI76_RS15770 at 3283.965 kb on - strand, within BWI76_RS15775
Per-strain Table
Position Strand Gene LocusTag Fraction Chloramphenicol 0.001 mg/ml remove 3,282,604 - BWI76_RS15755 0.59 +1.2 3,282,604 - BWI76_RS15755 0.59 -0.4 3,282,604 - BWI76_RS15755 0.59 +0.2 3,282,604 - BWI76_RS15755 0.59 +0.8 3,282,606 - BWI76_RS15755 0.59 -0.2 3,282,654 + BWI76_RS15755 0.78 -1.5 3,282,687 + +0.6 3,282,729 - BWI76_RS15760 0.11 +0.4 3,282,890 + -0.8 3,282,928 - +2.5 3,283,036 - BWI76_RS15765 0.21 +0.5 3,283,144 + BWI76_RS15765 0.36 +0.2 3,283,201 - BWI76_RS15765 0.44 -0.1 3,283,292 + BWI76_RS15765 0.57 -1.7 3,283,733 - BWI76_RS15770 0.45 -0.8 3,283,740 - BWI76_RS15770 0.47 -0.4 3,283,773 - BWI76_RS15770 0.58 -0.8 3,283,804 - BWI76_RS15770 0.68 -1.6 3,283,965 - BWI76_RS15775 0.20 +0.8
Or see this region's nucleotide sequence