Experiment: Chloramphenicol 0.001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS14620 and BWI76_RS14625 are separated by 171 nucleotides BWI76_RS14625 and BWI76_RS14630 are separated by 51 nucleotides BWI76_RS14630 and BWI76_RS14635 are separated by 40 nucleotides
BWI76_RS14620: BWI76_RS14620 - acetylornithine deacetylase or succinyl-diaminopimelate desuccinylase, at 3,068,313 to 3,069,425
_RS14620
BWI76_RS14625: BWI76_RS14625 - protein TolA, at 3,069,597 to 3,070,025
_RS14625
BWI76_RS14630: BWI76_RS14630 - TonB-dependent receptor, at 3,070,077 to 3,072,041
_RS14630
BWI76_RS14635: BWI76_RS14635 - receptor, at 3,072,082 to 3,073,140
_RS14635
Position (kb)
3070
3071
3072
3073 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 3069.389 kb on + strand at 3069.850 kb on - strand, within BWI76_RS14625 at 3070.008 kb on - strand at 3070.193 kb on + strand at 3070.506 kb on - strand, within BWI76_RS14630 at 3070.637 kb on + strand, within BWI76_RS14630 at 3070.851 kb on - strand, within BWI76_RS14630 at 3070.858 kb on - strand, within BWI76_RS14630 at 3071.081 kb on + strand, within BWI76_RS14630 at 3071.081 kb on + strand, within BWI76_RS14630 at 3071.081 kb on + strand, within BWI76_RS14630 at 3071.081 kb on + strand, within BWI76_RS14630 at 3071.089 kb on - strand, within BWI76_RS14630 at 3071.204 kb on + strand, within BWI76_RS14630 at 3071.212 kb on - strand, within BWI76_RS14630 at 3071.262 kb on + strand, within BWI76_RS14630 at 3071.403 kb on + strand, within BWI76_RS14630 at 3071.574 kb on - strand, within BWI76_RS14630 at 3071.756 kb on + strand, within BWI76_RS14630 at 3071.785 kb on - strand, within BWI76_RS14630 at 3071.817 kb on + strand, within BWI76_RS14630 at 3071.876 kb on + strand at 3072.299 kb on + strand, within BWI76_RS14635 at 3072.307 kb on - strand, within BWI76_RS14635 at 3072.312 kb on - strand, within BWI76_RS14635 at 3072.422 kb on - strand, within BWI76_RS14635 at 3072.427 kb on - strand, within BWI76_RS14635 at 3072.432 kb on - strand, within BWI76_RS14635 at 3072.547 kb on + strand, within BWI76_RS14635 at 3072.547 kb on - strand, within BWI76_RS14635 at 3072.640 kb on - strand, within BWI76_RS14635 at 3072.643 kb on + strand, within BWI76_RS14635 at 3072.743 kb on + strand, within BWI76_RS14635 at 3072.770 kb on + strand, within BWI76_RS14635
Per-strain Table
Position Strand Gene LocusTag Fraction Chloramphenicol 0.001 mg/ml remove 3,069,389 + +0.5 3,069,850 - BWI76_RS14625 0.59 -0.5 3,070,008 - -0.1 3,070,193 + -1.0 3,070,506 - BWI76_RS14630 0.22 -1.2 3,070,637 + BWI76_RS14630 0.28 -2.3 3,070,851 - BWI76_RS14630 0.39 +1.7 3,070,858 - BWI76_RS14630 0.40 +0.1 3,071,081 + BWI76_RS14630 0.51 +0.0 3,071,081 + BWI76_RS14630 0.51 +0.8 3,071,081 + BWI76_RS14630 0.51 +2.0 3,071,081 + BWI76_RS14630 0.51 -1.4 3,071,089 - BWI76_RS14630 0.52 +1.7 3,071,204 + BWI76_RS14630 0.57 -0.7 3,071,212 - BWI76_RS14630 0.58 +0.4 3,071,262 + BWI76_RS14630 0.60 -0.2 3,071,403 + BWI76_RS14630 0.67 +0.4 3,071,574 - BWI76_RS14630 0.76 +2.7 3,071,756 + BWI76_RS14630 0.85 -0.7 3,071,785 - BWI76_RS14630 0.87 +1.6 3,071,817 + BWI76_RS14630 0.89 -0.6 3,071,876 + -1.1 3,072,299 + BWI76_RS14635 0.20 -0.3 3,072,307 - BWI76_RS14635 0.21 -0.1 3,072,312 - BWI76_RS14635 0.22 +0.1 3,072,422 - BWI76_RS14635 0.32 -0.8 3,072,427 - BWI76_RS14635 0.33 +0.4 3,072,432 - BWI76_RS14635 0.33 +0.4 3,072,547 + BWI76_RS14635 0.44 -1.1 3,072,547 - BWI76_RS14635 0.44 +1.9 3,072,640 - BWI76_RS14635 0.53 -1.4 3,072,643 + BWI76_RS14635 0.53 -0.1 3,072,743 + BWI76_RS14635 0.62 +0.3 3,072,770 + BWI76_RS14635 0.65 +0.8
Or see this region's nucleotide sequence