Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS13165

Experiment: Chloramphenicol 0.001 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS13155 and BWI76_RS13160 are separated by 35 nucleotidesBWI76_RS13160 and BWI76_RS13165 are separated by 204 nucleotidesBWI76_RS13165 and BWI76_RS13170 are separated by 48 nucleotidesBWI76_RS13170 and BWI76_RS13175 are separated by 15 nucleotides BWI76_RS13155: BWI76_RS13155 - hypothetical protein, at 2,743,127 to 2,743,534 _RS13155 BWI76_RS13160: BWI76_RS13160 - azoreductase, at 2,743,570 to 2,744,175 _RS13160 BWI76_RS13165: BWI76_RS13165 - ATP-dependent RNA helicase HrpA, at 2,744,380 to 2,748,282 _RS13165 BWI76_RS13170: BWI76_RS13170 - methyltransferase, at 2,748,331 to 2,748,990 _RS13170 BWI76_RS13175: BWI76_RS13175 - NodT family RND efflux system outer membrane lipoprotein, at 2,749,006 to 2,750,385 _RS13175 Position (kb) 2744 2745 2746 2747 2748 2749Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 2743.707 kb on + strand, within BWI76_RS13160at 2744.165 kb on + strandat 2744.220 kb on - strandat 2744.892 kb on + strand, within BWI76_RS13165at 2745.143 kb on - strand, within BWI76_RS13165at 2745.368 kb on - strand, within BWI76_RS13165at 2745.704 kb on + strand, within BWI76_RS13165at 2745.771 kb on - strand, within BWI76_RS13165at 2745.947 kb on - strand, within BWI76_RS13165at 2746.641 kb on + strand, within BWI76_RS13165at 2746.641 kb on + strand, within BWI76_RS13165at 2746.649 kb on - strand, within BWI76_RS13165at 2747.271 kb on + strand, within BWI76_RS13165at 2747.329 kb on + strand, within BWI76_RS13165at 2747.419 kb on - strand, within BWI76_RS13165at 2748.216 kb on + strandat 2748.513 kb on + strand, within BWI76_RS13170at 2748.726 kb on + strand, within BWI76_RS13170at 2748.768 kb on - strand, within BWI76_RS13170

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Per-strain Table

Position Strand Gene LocusTag Fraction Chloramphenicol 0.001 mg/ml
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2,743,707 + BWI76_RS13160 0.23 +0.2
2,744,165 + +2.2
2,744,220 - -0.1
2,744,892 + BWI76_RS13165 0.13 -1.1
2,745,143 - BWI76_RS13165 0.20 +0.1
2,745,368 - BWI76_RS13165 0.25 -1.5
2,745,704 + BWI76_RS13165 0.34 -1.3
2,745,771 - BWI76_RS13165 0.36 -2.4
2,745,947 - BWI76_RS13165 0.40 -2.0
2,746,641 + BWI76_RS13165 0.58 -3.0
2,746,641 + BWI76_RS13165 0.58 +0.1
2,746,649 - BWI76_RS13165 0.58 -2.7
2,747,271 + BWI76_RS13165 0.74 -2.2
2,747,329 + BWI76_RS13165 0.76 -2.0
2,747,419 - BWI76_RS13165 0.78 +0.3
2,748,216 + -0.7
2,748,513 + BWI76_RS13170 0.28 -0.8
2,748,726 + BWI76_RS13170 0.60 +1.4
2,748,768 - BWI76_RS13170 0.66 +0.8

Or see this region's nucleotide sequence