Experiment: Chloramphenicol 0.001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS13155 and BWI76_RS13160 are separated by 35 nucleotides BWI76_RS13160 and BWI76_RS13165 are separated by 204 nucleotides BWI76_RS13165 and BWI76_RS13170 are separated by 48 nucleotides BWI76_RS13170 and BWI76_RS13175 are separated by 15 nucleotides
BWI76_RS13155: BWI76_RS13155 - hypothetical protein, at 2,743,127 to 2,743,534
_RS13155
BWI76_RS13160: BWI76_RS13160 - azoreductase, at 2,743,570 to 2,744,175
_RS13160
BWI76_RS13165: BWI76_RS13165 - ATP-dependent RNA helicase HrpA, at 2,744,380 to 2,748,282
_RS13165
BWI76_RS13170: BWI76_RS13170 - methyltransferase, at 2,748,331 to 2,748,990
_RS13170
BWI76_RS13175: BWI76_RS13175 - NodT family RND efflux system outer membrane lipoprotein, at 2,749,006 to 2,750,385
_RS13175
Position (kb)
2744
2745
2746
2747
2748
2749 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 2743.707 kb on + strand, within BWI76_RS13160 at 2744.165 kb on + strand at 2744.220 kb on - strand at 2744.892 kb on + strand, within BWI76_RS13165 at 2745.143 kb on - strand, within BWI76_RS13165 at 2745.368 kb on - strand, within BWI76_RS13165 at 2745.704 kb on + strand, within BWI76_RS13165 at 2745.771 kb on - strand, within BWI76_RS13165 at 2745.947 kb on - strand, within BWI76_RS13165 at 2746.641 kb on + strand, within BWI76_RS13165 at 2746.641 kb on + strand, within BWI76_RS13165 at 2746.649 kb on - strand, within BWI76_RS13165 at 2747.271 kb on + strand, within BWI76_RS13165 at 2747.329 kb on + strand, within BWI76_RS13165 at 2747.419 kb on - strand, within BWI76_RS13165 at 2748.216 kb on + strand at 2748.513 kb on + strand, within BWI76_RS13170 at 2748.726 kb on + strand, within BWI76_RS13170 at 2748.768 kb on - strand, within BWI76_RS13170
Per-strain Table
Position Strand Gene LocusTag Fraction Chloramphenicol 0.001 mg/ml remove 2,743,707 + BWI76_RS13160 0.23 +0.2 2,744,165 + +2.2 2,744,220 - -0.1 2,744,892 + BWI76_RS13165 0.13 -1.1 2,745,143 - BWI76_RS13165 0.20 +0.1 2,745,368 - BWI76_RS13165 0.25 -1.5 2,745,704 + BWI76_RS13165 0.34 -1.3 2,745,771 - BWI76_RS13165 0.36 -2.4 2,745,947 - BWI76_RS13165 0.40 -2.0 2,746,641 + BWI76_RS13165 0.58 -3.0 2,746,641 + BWI76_RS13165 0.58 +0.1 2,746,649 - BWI76_RS13165 0.58 -2.7 2,747,271 + BWI76_RS13165 0.74 -2.2 2,747,329 + BWI76_RS13165 0.76 -2.0 2,747,419 - BWI76_RS13165 0.78 +0.3 2,748,216 + -0.7 2,748,513 + BWI76_RS13170 0.28 -0.8 2,748,726 + BWI76_RS13170 0.60 +1.4 2,748,768 - BWI76_RS13170 0.66 +0.8
Or see this region's nucleotide sequence