Experiment: Chloramphenicol 0.001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS12965 and BWI76_RS12970 are separated by 111 nucleotides BWI76_RS12970 and BWI76_RS12975 are separated by 54 nucleotides
BWI76_RS12965: BWI76_RS12965 - LysR family transcriptional regulator, at 2,702,781 to 2,703,650
_RS12965
BWI76_RS12970: BWI76_RS12970 - MFS transporter, at 2,703,762 to 2,705,198
_RS12970
BWI76_RS12975: BWI76_RS12975 - type I glyceraldehyde-3-phosphate dehydrogenase, at 2,705,253 to 2,706,263
_RS12975
Position (kb)
2703
2704
2705
2706 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2702.779 kb on + strand at 2702.779 kb on + strand at 2703.053 kb on - strand, within BWI76_RS12965 at 2703.123 kb on + strand, within BWI76_RS12965 at 2703.151 kb on + strand, within BWI76_RS12965 at 2703.169 kb on + strand, within BWI76_RS12965 at 2703.194 kb on - strand, within BWI76_RS12965 at 2703.338 kb on - strand, within BWI76_RS12965 at 2703.491 kb on - strand, within BWI76_RS12965 at 2703.757 kb on + strand at 2703.937 kb on + strand, within BWI76_RS12970 at 2704.208 kb on - strand, within BWI76_RS12970 at 2704.340 kb on + strand, within BWI76_RS12970 at 2704.441 kb on + strand, within BWI76_RS12970 at 2704.556 kb on + strand, within BWI76_RS12970 at 2704.587 kb on - strand, within BWI76_RS12970 at 2704.587 kb on - strand, within BWI76_RS12970 at 2704.593 kb on - strand, within BWI76_RS12970 at 2704.597 kb on - strand, within BWI76_RS12970 at 2704.681 kb on - strand, within BWI76_RS12970 at 2704.742 kb on + strand, within BWI76_RS12970 at 2704.757 kb on - strand at 2704.779 kb on - strand, within BWI76_RS12970 at 2704.815 kb on - strand, within BWI76_RS12970 at 2705.019 kb on + strand, within BWI76_RS12970 at 2705.019 kb on + strand, within BWI76_RS12970 at 2705.019 kb on + strand, within BWI76_RS12970 at 2705.506 kb on - strand, within BWI76_RS12975 at 2705.506 kb on - strand, within BWI76_RS12975 at 2705.747 kb on - strand, within BWI76_RS12975 at 2705.932 kb on + strand, within BWI76_RS12975
Per-strain Table
Position Strand Gene LocusTag Fraction Chloramphenicol 0.001 mg/ml remove 2,702,779 + +1.4 2,702,779 + -0.2 2,703,053 - BWI76_RS12965 0.31 +0.2 2,703,123 + BWI76_RS12965 0.39 +0.6 2,703,151 + BWI76_RS12965 0.43 -1.1 2,703,169 + BWI76_RS12965 0.45 -0.3 2,703,194 - BWI76_RS12965 0.47 -1.7 2,703,338 - BWI76_RS12965 0.64 +1.8 2,703,491 - BWI76_RS12965 0.82 -0.4 2,703,757 + -0.4 2,703,937 + BWI76_RS12970 0.12 +2.3 2,704,208 - BWI76_RS12970 0.31 -0.5 2,704,340 + BWI76_RS12970 0.40 -0.7 2,704,441 + BWI76_RS12970 0.47 -0.9 2,704,556 + BWI76_RS12970 0.55 +0.6 2,704,587 - BWI76_RS12970 0.57 -0.3 2,704,587 - BWI76_RS12970 0.57 +0.3 2,704,593 - BWI76_RS12970 0.58 +0.2 2,704,597 - BWI76_RS12970 0.58 -0.3 2,704,681 - BWI76_RS12970 0.64 +0.3 2,704,742 + BWI76_RS12970 0.68 -0.4 2,704,757 - -0.0 2,704,779 - BWI76_RS12970 0.71 -0.5 2,704,815 - BWI76_RS12970 0.73 +1.6 2,705,019 + BWI76_RS12970 0.87 +0.2 2,705,019 + BWI76_RS12970 0.87 -1.9 2,705,019 + BWI76_RS12970 0.87 -0.3 2,705,506 - BWI76_RS12975 0.25 -0.5 2,705,506 - BWI76_RS12975 0.25 -0.1 2,705,747 - BWI76_RS12975 0.49 -0.4 2,705,932 + BWI76_RS12975 0.67 -1.7
Or see this region's nucleotide sequence