Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS12960

Experiment: Chloramphenicol 0.001 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS12955 and BWI76_RS12960 are separated by 65 nucleotidesBWI76_RS12960 and BWI76_RS12965 are separated by 239 nucleotides BWI76_RS12955: BWI76_RS12955 - multidrug efflux RND transporter permease subunit OqxB, at 2,698,844 to 2,701,996 _RS12955 BWI76_RS12960: BWI76_RS12960 - transcriptional regulator, at 2,702,062 to 2,702,541 _RS12960 BWI76_RS12965: BWI76_RS12965 - LysR family transcriptional regulator, at 2,702,781 to 2,703,650 _RS12965 Position (kb) 2702 2703Strain fitness (log2 ratio) -1 0 1 2 3 4 5 6 7 8 9 10 11at 2701.122 kb on + strand, within BWI76_RS12955at 2701.268 kb on - strand, within BWI76_RS12955at 2701.638 kb on - strand, within BWI76_RS12955at 2701.645 kb on + strand, within BWI76_RS12955at 2701.853 kb on - strandat 2701.935 kb on + strandat 2702.072 kb on + strandat 2702.080 kb on - strandat 2702.497 kb on + strandat 2702.575 kb on + strandat 2702.583 kb on + strandat 2702.583 kb on + strandat 2702.590 kb on + strandat 2702.591 kb on - strandat 2702.779 kb on + strandat 2702.779 kb on + strandat 2703.053 kb on - strand, within BWI76_RS12965at 2703.123 kb on + strand, within BWI76_RS12965at 2703.151 kb on + strand, within BWI76_RS12965at 2703.169 kb on + strand, within BWI76_RS12965at 2703.194 kb on - strand, within BWI76_RS12965at 2703.338 kb on - strand, within BWI76_RS12965at 2703.491 kb on - strand, within BWI76_RS12965

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Per-strain Table

Position Strand Gene LocusTag Fraction Chloramphenicol 0.001 mg/ml
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2,701,122 + BWI76_RS12955 0.72 +0.0
2,701,268 - BWI76_RS12955 0.77 +0.7
2,701,638 - BWI76_RS12955 0.89 -0.2
2,701,645 + BWI76_RS12955 0.89 -1.0
2,701,853 - +0.1
2,701,935 + -0.3
2,702,072 + +9.5
2,702,080 - +11.7
2,702,497 + +9.7
2,702,575 + +9.6
2,702,583 + +7.8
2,702,583 + +9.4
2,702,590 + +9.5
2,702,591 - +4.4
2,702,779 + +1.4
2,702,779 + -0.2
2,703,053 - BWI76_RS12965 0.31 +0.2
2,703,123 + BWI76_RS12965 0.39 +0.6
2,703,151 + BWI76_RS12965 0.43 -1.1
2,703,169 + BWI76_RS12965 0.45 -0.3
2,703,194 - BWI76_RS12965 0.47 -1.7
2,703,338 - BWI76_RS12965 0.64 +1.8
2,703,491 - BWI76_RS12965 0.82 -0.4

Or see this region's nucleotide sequence