Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS12520

Experiment: Chloramphenicol 0.001 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS12510 and BWI76_RS12515 are separated by 92 nucleotidesBWI76_RS12515 and BWI76_RS12520 are separated by 257 nucleotidesBWI76_RS12520 and BWI76_RS12525 are separated by 176 nucleotides BWI76_RS12510: BWI76_RS12510 - peptide ABC transporter substrate-binding protein, at 2,612,587 to 2,614,203 _RS12510 BWI76_RS12515: BWI76_RS12515 - protease, at 2,614,296 to 2,614,859 _RS12515 BWI76_RS12520: BWI76_RS12520 - hypothetical protein, at 2,615,117 to 2,615,320 _RS12520 BWI76_RS12525: BWI76_RS12525 - beta-1,4-xylosidase, at 2,615,497 to 2,617,176 _RS12525 Position (kb) 2615 2616Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 2614.168 kb on + strandat 2614.625 kb on - strand, within BWI76_RS12515at 2614.653 kb on + strand, within BWI76_RS12515at 2614.889 kb on + strandat 2614.901 kb on - strandat 2614.901 kb on - strandat 2614.963 kb on + strandat 2615.139 kb on + strand, within BWI76_RS12520at 2615.227 kb on + strand, within BWI76_RS12520at 2615.232 kb on + strand, within BWI76_RS12520at 2615.232 kb on - strand, within BWI76_RS12520at 2615.304 kb on + strandat 2615.312 kb on - strandat 2615.412 kb on - strandat 2615.485 kb on + strandat 2615.493 kb on - strandat 2615.604 kb on - strandat 2615.619 kb on - strandat 2615.630 kb on - strandat 2615.680 kb on - strand, within BWI76_RS12525at 2615.753 kb on - strand, within BWI76_RS12525at 2615.773 kb on - strand, within BWI76_RS12525at 2615.811 kb on - strand, within BWI76_RS12525at 2615.862 kb on + strand, within BWI76_RS12525at 2615.865 kb on - strand, within BWI76_RS12525at 2615.963 kb on + strand, within BWI76_RS12525at 2615.972 kb on - strand, within BWI76_RS12525at 2616.039 kb on + strand, within BWI76_RS12525at 2616.090 kb on + strand, within BWI76_RS12525at 2616.130 kb on + strand, within BWI76_RS12525at 2616.166 kb on - strand, within BWI76_RS12525at 2616.177 kb on + strand, within BWI76_RS12525at 2616.177 kb on + strand, within BWI76_RS12525at 2616.259 kb on - strand, within BWI76_RS12525

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Per-strain Table

Position Strand Gene LocusTag Fraction Chloramphenicol 0.001 mg/ml
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2,614,168 + +0.5
2,614,625 - BWI76_RS12515 0.58 +0.2
2,614,653 + BWI76_RS12515 0.63 +1.0
2,614,889 + -0.0
2,614,901 - +1.1
2,614,901 - +0.8
2,614,963 + +1.2
2,615,139 + BWI76_RS12520 0.11 +0.2
2,615,227 + BWI76_RS12520 0.54 -0.0
2,615,232 + BWI76_RS12520 0.56 +0.0
2,615,232 - BWI76_RS12520 0.56 +3.9
2,615,304 + -0.2
2,615,312 - +0.3
2,615,412 - -0.2
2,615,485 + +0.9
2,615,493 - +0.1
2,615,604 - -0.9
2,615,619 - +0.7
2,615,630 - +0.1
2,615,680 - BWI76_RS12525 0.11 +0.0
2,615,753 - BWI76_RS12525 0.15 +0.9
2,615,773 - BWI76_RS12525 0.16 -0.6
2,615,811 - BWI76_RS12525 0.19 -0.7
2,615,862 + BWI76_RS12525 0.22 +2.6
2,615,865 - BWI76_RS12525 0.22 +0.2
2,615,963 + BWI76_RS12525 0.28 -0.4
2,615,972 - BWI76_RS12525 0.28 -0.0
2,616,039 + BWI76_RS12525 0.32 -1.3
2,616,090 + BWI76_RS12525 0.35 -0.8
2,616,130 + BWI76_RS12525 0.38 +0.9
2,616,166 - BWI76_RS12525 0.40 +0.9
2,616,177 + BWI76_RS12525 0.40 -0.3
2,616,177 + BWI76_RS12525 0.40 -2.4
2,616,259 - BWI76_RS12525 0.45 -0.8

Or see this region's nucleotide sequence