Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS11395

Experiment: Chloramphenicol 0.001 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS11390 and BWI76_RS11395 overlap by 4 nucleotidesBWI76_RS11395 and BWI76_RS11400 are separated by 180 nucleotidesBWI76_RS11400 and BWI76_RS11405 are separated by 542 nucleotides BWI76_RS11390: BWI76_RS11390 - iron dicitrate transport regulator FecR, at 2,401,482 to 2,402,429 _RS11390 BWI76_RS11395: BWI76_RS11395 - RNA polymerase sigma factor FecI, at 2,402,426 to 2,402,947 _RS11395 BWI76_RS11400: BWI76_RS11400 - SAM-dependent methyltransferase, at 2,403,128 to 2,403,280 _RS11400 BWI76_RS11405: BWI76_RS11405 - lipid A biosynthesis acyltransferase, at 2,403,823 to 2,404,737 _RS11405 Position (kb) 2402 2403Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 2401.626 kb on + strand, within BWI76_RS11390at 2401.944 kb on + strand, within BWI76_RS11390at 2402.090 kb on - strand, within BWI76_RS11390at 2402.309 kb on - strand, within BWI76_RS11390at 2402.412 kb on + strandat 2402.582 kb on - strand, within BWI76_RS11395at 2402.707 kb on - strand, within BWI76_RS11395at 2402.819 kb on - strand, within BWI76_RS11395at 2402.862 kb on - strand, within BWI76_RS11395at 2402.882 kb on + strand, within BWI76_RS11395at 2402.890 kb on - strand, within BWI76_RS11395at 2402.925 kb on - strandat 2403.133 kb on + strandat 2403.155 kb on + strand, within BWI76_RS11400at 2403.163 kb on - strand, within BWI76_RS11400at 2403.165 kb on - strand, within BWI76_RS11400at 2403.165 kb on - strand, within BWI76_RS11400at 2403.188 kb on + strand, within BWI76_RS11400at 2403.238 kb on + strand, within BWI76_RS11400at 2403.238 kb on + strand, within BWI76_RS11400at 2403.238 kb on + strand, within BWI76_RS11400at 2403.238 kb on + strand, within BWI76_RS11400at 2403.248 kb on + strand, within BWI76_RS11400at 2403.350 kb on + strandat 2403.404 kb on + strandat 2403.412 kb on - strandat 2403.421 kb on + strandat 2403.451 kb on + strandat 2403.451 kb on + strandat 2403.461 kb on + strandat 2403.480 kb on - strandat 2403.487 kb on + strandat 2403.487 kb on + strandat 2403.487 kb on + strandat 2403.487 kb on + strandat 2403.488 kb on + strandat 2403.509 kb on + strandat 2403.521 kb on + strandat 2403.530 kb on + strandat 2403.537 kb on - strandat 2403.539 kb on - strandat 2403.545 kb on + strandat 2403.545 kb on + strandat 2403.545 kb on + strandat 2403.553 kb on - strandat 2403.555 kb on + strandat 2403.555 kb on + strandat 2403.736 kb on + strandat 2403.736 kb on + strandat 2403.738 kb on + strandat 2403.744 kb on + strandat 2403.746 kb on - strandat 2403.751 kb on + strandat 2403.751 kb on + strandat 2403.759 kb on - strandat 2403.759 kb on - strandat 2403.759 kb on - strandat 2403.759 kb on - strandat 2403.761 kb on + strandat 2403.779 kb on - strandat 2403.793 kb on + strandat 2403.795 kb on - strandat 2403.797 kb on + strandat 2403.799 kb on + strandat 2403.799 kb on + strandat 2403.799 kb on + strandat 2403.858 kb on + strandat 2403.875 kb on + strandat 2403.875 kb on + strandat 2403.875 kb on + strandat 2403.875 kb on + strandat 2403.875 kb on + strandat 2403.875 kb on + strandat 2403.875 kb on + strandat 2403.875 kb on + strandat 2403.880 kb on + strandat 2403.881 kb on + strandat 2403.883 kb on - strandat 2403.883 kb on - strandat 2403.883 kb on - strandat 2403.883 kb on - strandat 2403.883 kb on - strandat 2403.885 kb on + strandat 2403.886 kb on + strandat 2403.886 kb on + strandat 2403.886 kb on + strandat 2403.886 kb on + strandat 2403.886 kb on + strandat 2403.886 kb on + strandat 2403.886 kb on + strandat 2403.886 kb on + strandat 2403.886 kb on + strandat 2403.886 kb on + strandat 2403.886 kb on + strandat 2403.891 kb on + strandat 2403.893 kb on - strandat 2403.894 kb on - strandat 2403.896 kb on + strandat 2403.907 kb on + strandat 2403.912 kb on + strandat 2403.920 kb on - strand, within BWI76_RS11405at 2403.920 kb on - strand, within BWI76_RS11405at 2403.920 kb on - strand, within BWI76_RS11405at 2403.942 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Chloramphenicol 0.001 mg/ml
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2,401,626 + BWI76_RS11390 0.15 +0.5
2,401,944 + BWI76_RS11390 0.49 +0.2
2,402,090 - BWI76_RS11390 0.64 +0.6
2,402,309 - BWI76_RS11390 0.87 -0.6
2,402,412 + -1.2
2,402,582 - BWI76_RS11395 0.30 -1.7
2,402,707 - BWI76_RS11395 0.54 -1.0
2,402,819 - BWI76_RS11395 0.75 -1.8
2,402,862 - BWI76_RS11395 0.84 -1.1
2,402,882 + BWI76_RS11395 0.87 -0.4
2,402,890 - BWI76_RS11395 0.89 -0.7
2,402,925 - -1.7
2,403,133 + +0.0
2,403,155 + BWI76_RS11400 0.18 +0.5
2,403,163 - BWI76_RS11400 0.23 -0.4
2,403,165 - BWI76_RS11400 0.24 -0.8
2,403,165 - BWI76_RS11400 0.24 +0.7
2,403,188 + BWI76_RS11400 0.39 +2.2
2,403,238 + BWI76_RS11400 0.72 -0.5
2,403,238 + BWI76_RS11400 0.72 +0.0
2,403,238 + BWI76_RS11400 0.72 +1.5
2,403,238 + BWI76_RS11400 0.72 -0.3
2,403,248 + BWI76_RS11400 0.78 -0.8
2,403,350 + +0.1
2,403,404 + +1.2
2,403,412 - +0.9
2,403,421 + -1.2
2,403,451 + +0.5
2,403,451 + -0.6
2,403,461 + -1.0
2,403,480 - -0.9
2,403,487 + -1.0
2,403,487 + +0.6
2,403,487 + +0.3
2,403,487 + -2.0
2,403,488 + +0.5
2,403,509 + +1.2
2,403,521 + +0.5
2,403,530 + +0.4
2,403,537 - +1.2
2,403,539 - -0.4
2,403,545 + +1.2
2,403,545 + +0.2
2,403,545 + +0.6
2,403,553 - -0.5
2,403,555 + +1.2
2,403,555 + -0.0
2,403,736 + +2.8
2,403,736 + +0.5
2,403,738 + +0.3
2,403,744 + -0.2
2,403,746 - +0.3
2,403,751 + +0.9
2,403,751 + -0.2
2,403,759 - -0.0
2,403,759 - +1.2
2,403,759 - -1.5
2,403,759 - +1.6
2,403,761 + +1.8
2,403,779 - -0.2
2,403,793 + -0.8
2,403,795 - +2.4
2,403,797 + +0.1
2,403,799 + -0.1
2,403,799 + +1.1
2,403,799 + +0.1
2,403,858 + +0.5
2,403,875 + +0.0
2,403,875 + -0.1
2,403,875 + -0.8
2,403,875 + +1.6
2,403,875 + +0.6
2,403,875 + +0.7
2,403,875 + +0.1
2,403,875 + +2.1
2,403,880 + -0.2
2,403,881 + -3.1
2,403,883 - +2.2
2,403,883 - -1.1
2,403,883 - +0.8
2,403,883 - -1.5
2,403,883 - +1.7
2,403,885 + +1.2
2,403,886 + +0.2
2,403,886 + -1.1
2,403,886 + -1.4
2,403,886 + +0.1
2,403,886 + +1.1
2,403,886 + +0.7
2,403,886 + -0.6
2,403,886 + -1.0
2,403,886 + -1.6
2,403,886 + +0.2
2,403,886 + +0.3
2,403,891 + +0.3
2,403,893 - +0.8
2,403,894 - +1.4
2,403,896 + -1.0
2,403,907 + +0.7
2,403,912 + -0.4
2,403,920 - BWI76_RS11405 0.11 +0.6
2,403,920 - BWI76_RS11405 0.11 -0.9
2,403,920 - BWI76_RS11405 0.11 +0.9
2,403,942 - -0.0

Or see this region's nucleotide sequence