Experiment: Chloramphenicol 0.001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS11390 and BWI76_RS11395 overlap by 4 nucleotides BWI76_RS11395 and BWI76_RS11400 are separated by 180 nucleotides BWI76_RS11400 and BWI76_RS11405 are separated by 542 nucleotides
BWI76_RS11390: BWI76_RS11390 - iron dicitrate transport regulator FecR, at 2,401,482 to 2,402,429
_RS11390
BWI76_RS11395: BWI76_RS11395 - RNA polymerase sigma factor FecI, at 2,402,426 to 2,402,947
_RS11395
BWI76_RS11400: BWI76_RS11400 - SAM-dependent methyltransferase, at 2,403,128 to 2,403,280
_RS11400
BWI76_RS11405: BWI76_RS11405 - lipid A biosynthesis acyltransferase, at 2,403,823 to 2,404,737
_RS11405
Position (kb)
2402
2403 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 2401.626 kb on + strand, within BWI76_RS11390 at 2401.944 kb on + strand, within BWI76_RS11390 at 2402.090 kb on - strand, within BWI76_RS11390 at 2402.309 kb on - strand, within BWI76_RS11390 at 2402.412 kb on + strand at 2402.582 kb on - strand, within BWI76_RS11395 at 2402.707 kb on - strand, within BWI76_RS11395 at 2402.819 kb on - strand, within BWI76_RS11395 at 2402.862 kb on - strand, within BWI76_RS11395 at 2402.882 kb on + strand, within BWI76_RS11395 at 2402.890 kb on - strand, within BWI76_RS11395 at 2402.925 kb on - strand at 2403.133 kb on + strand at 2403.155 kb on + strand, within BWI76_RS11400 at 2403.163 kb on - strand, within BWI76_RS11400 at 2403.165 kb on - strand, within BWI76_RS11400 at 2403.165 kb on - strand, within BWI76_RS11400 at 2403.188 kb on + strand, within BWI76_RS11400 at 2403.238 kb on + strand, within BWI76_RS11400 at 2403.238 kb on + strand, within BWI76_RS11400 at 2403.238 kb on + strand, within BWI76_RS11400 at 2403.238 kb on + strand, within BWI76_RS11400 at 2403.248 kb on + strand, within BWI76_RS11400 at 2403.350 kb on + strand at 2403.404 kb on + strand at 2403.412 kb on - strand at 2403.421 kb on + strand at 2403.451 kb on + strand at 2403.451 kb on + strand at 2403.461 kb on + strand at 2403.480 kb on - strand at 2403.487 kb on + strand at 2403.487 kb on + strand at 2403.487 kb on + strand at 2403.487 kb on + strand at 2403.488 kb on + strand at 2403.509 kb on + strand at 2403.521 kb on + strand at 2403.530 kb on + strand at 2403.537 kb on - strand at 2403.539 kb on - strand at 2403.545 kb on + strand at 2403.545 kb on + strand at 2403.545 kb on + strand at 2403.553 kb on - strand at 2403.555 kb on + strand at 2403.555 kb on + strand at 2403.736 kb on + strand at 2403.736 kb on + strand at 2403.738 kb on + strand at 2403.744 kb on + strand at 2403.746 kb on - strand at 2403.751 kb on + strand at 2403.751 kb on + strand at 2403.759 kb on - strand at 2403.759 kb on - strand at 2403.759 kb on - strand at 2403.759 kb on - strand at 2403.761 kb on + strand at 2403.779 kb on - strand at 2403.793 kb on + strand at 2403.795 kb on - strand at 2403.797 kb on + strand at 2403.799 kb on + strand at 2403.799 kb on + strand at 2403.799 kb on + strand at 2403.858 kb on + strand at 2403.875 kb on + strand at 2403.875 kb on + strand at 2403.875 kb on + strand at 2403.875 kb on + strand at 2403.875 kb on + strand at 2403.875 kb on + strand at 2403.875 kb on + strand at 2403.875 kb on + strand at 2403.880 kb on + strand at 2403.881 kb on + strand at 2403.883 kb on - strand at 2403.883 kb on - strand at 2403.883 kb on - strand at 2403.883 kb on - strand at 2403.883 kb on - strand at 2403.885 kb on + strand at 2403.886 kb on + strand at 2403.886 kb on + strand at 2403.886 kb on + strand at 2403.886 kb on + strand at 2403.886 kb on + strand at 2403.886 kb on + strand at 2403.886 kb on + strand at 2403.886 kb on + strand at 2403.886 kb on + strand at 2403.886 kb on + strand at 2403.886 kb on + strand at 2403.891 kb on + strand at 2403.893 kb on - strand at 2403.894 kb on - strand at 2403.896 kb on + strand at 2403.907 kb on + strand at 2403.912 kb on + strand at 2403.920 kb on - strand, within BWI76_RS11405 at 2403.920 kb on - strand, within BWI76_RS11405 at 2403.920 kb on - strand, within BWI76_RS11405 at 2403.942 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Chloramphenicol 0.001 mg/ml remove 2,401,626 + BWI76_RS11390 0.15 +0.5 2,401,944 + BWI76_RS11390 0.49 +0.2 2,402,090 - BWI76_RS11390 0.64 +0.6 2,402,309 - BWI76_RS11390 0.87 -0.6 2,402,412 + -1.2 2,402,582 - BWI76_RS11395 0.30 -1.7 2,402,707 - BWI76_RS11395 0.54 -1.0 2,402,819 - BWI76_RS11395 0.75 -1.8 2,402,862 - BWI76_RS11395 0.84 -1.1 2,402,882 + BWI76_RS11395 0.87 -0.4 2,402,890 - BWI76_RS11395 0.89 -0.7 2,402,925 - -1.7 2,403,133 + +0.0 2,403,155 + BWI76_RS11400 0.18 +0.5 2,403,163 - BWI76_RS11400 0.23 -0.4 2,403,165 - BWI76_RS11400 0.24 -0.8 2,403,165 - BWI76_RS11400 0.24 +0.7 2,403,188 + BWI76_RS11400 0.39 +2.2 2,403,238 + BWI76_RS11400 0.72 -0.5 2,403,238 + BWI76_RS11400 0.72 +0.0 2,403,238 + BWI76_RS11400 0.72 +1.5 2,403,238 + BWI76_RS11400 0.72 -0.3 2,403,248 + BWI76_RS11400 0.78 -0.8 2,403,350 + +0.1 2,403,404 + +1.2 2,403,412 - +0.9 2,403,421 + -1.2 2,403,451 + +0.5 2,403,451 + -0.6 2,403,461 + -1.0 2,403,480 - -0.9 2,403,487 + -1.0 2,403,487 + +0.6 2,403,487 + +0.3 2,403,487 + -2.0 2,403,488 + +0.5 2,403,509 + +1.2 2,403,521 + +0.5 2,403,530 + +0.4 2,403,537 - +1.2 2,403,539 - -0.4 2,403,545 + +1.2 2,403,545 + +0.2 2,403,545 + +0.6 2,403,553 - -0.5 2,403,555 + +1.2 2,403,555 + -0.0 2,403,736 + +2.8 2,403,736 + +0.5 2,403,738 + +0.3 2,403,744 + -0.2 2,403,746 - +0.3 2,403,751 + +0.9 2,403,751 + -0.2 2,403,759 - -0.0 2,403,759 - +1.2 2,403,759 - -1.5 2,403,759 - +1.6 2,403,761 + +1.8 2,403,779 - -0.2 2,403,793 + -0.8 2,403,795 - +2.4 2,403,797 + +0.1 2,403,799 + -0.1 2,403,799 + +1.1 2,403,799 + +0.1 2,403,858 + +0.5 2,403,875 + +0.0 2,403,875 + -0.1 2,403,875 + -0.8 2,403,875 + +1.6 2,403,875 + +0.6 2,403,875 + +0.7 2,403,875 + +0.1 2,403,875 + +2.1 2,403,880 + -0.2 2,403,881 + -3.1 2,403,883 - +2.2 2,403,883 - -1.1 2,403,883 - +0.8 2,403,883 - -1.5 2,403,883 - +1.7 2,403,885 + +1.2 2,403,886 + +0.2 2,403,886 + -1.1 2,403,886 + -1.4 2,403,886 + +0.1 2,403,886 + +1.1 2,403,886 + +0.7 2,403,886 + -0.6 2,403,886 + -1.0 2,403,886 + -1.6 2,403,886 + +0.2 2,403,886 + +0.3 2,403,891 + +0.3 2,403,893 - +0.8 2,403,894 - +1.4 2,403,896 + -1.0 2,403,907 + +0.7 2,403,912 + -0.4 2,403,920 - BWI76_RS11405 0.11 +0.6 2,403,920 - BWI76_RS11405 0.11 -0.9 2,403,920 - BWI76_RS11405 0.11 +0.9 2,403,942 - -0.0
Or see this region's nucleotide sequence