Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS10900

Experiment: Chloramphenicol 0.001 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS10890 and BWI76_RS10895 are separated by 84 nucleotidesBWI76_RS10895 and BWI76_RS10900 are separated by 22 nucleotidesBWI76_RS10900 and BWI76_RS10905 are separated by 91 nucleotidesBWI76_RS10905 and BWI76_RS10910 are separated by 301 nucleotides BWI76_RS10890: BWI76_RS10890 - glyoxylate/hydroxypyruvate reductase A, at 2,301,340 to 2,302,278 _RS10890 BWI76_RS10895: BWI76_RS10895 - phosphatase, at 2,302,363 to 2,303,100 _RS10895 BWI76_RS10900: BWI76_RS10900 - putative oxidoreductase, at 2,303,123 to 2,303,677 _RS10900 BWI76_RS10905: BWI76_RS10905 - hypothetical protein, at 2,303,769 to 2,304,263 _RS10905 BWI76_RS10910: BWI76_RS10910 - hypothetical protein, at 2,304,565 to 2,304,870 _RS10910 Position (kb) 2303 2304Strain fitness (log2 ratio) -2 -1 0 1 2 3at 2302.254 kb on + strandat 2302.370 kb on + strandat 2302.378 kb on - strandat 2302.393 kb on - strandat 2302.487 kb on - strand, within BWI76_RS10895at 2302.686 kb on + strand, within BWI76_RS10895at 2302.718 kb on + strand, within BWI76_RS10895at 2302.897 kb on + strand, within BWI76_RS10895at 2302.924 kb on + strand, within BWI76_RS10895at 2303.027 kb on - strandat 2303.148 kb on - strandat 2303.172 kb on - strandat 2303.210 kb on - strand, within BWI76_RS10900at 2303.288 kb on + strand, within BWI76_RS10900at 2303.339 kb on - strand, within BWI76_RS10900at 2303.596 kb on + strand, within BWI76_RS10900at 2303.642 kb on + strandat 2303.654 kb on - strandat 2303.867 kb on - strand, within BWI76_RS10905at 2304.027 kb on + strand, within BWI76_RS10905at 2304.056 kb on - strand, within BWI76_RS10905at 2304.163 kb on - strand, within BWI76_RS10905at 2304.209 kb on + strand, within BWI76_RS10905at 2304.289 kb on + strandat 2304.303 kb on + strandat 2304.312 kb on - strandat 2304.342 kb on - strandat 2304.517 kb on - strandat 2304.547 kb on + strandat 2304.557 kb on + strandat 2304.565 kb on - strandat 2304.609 kb on + strand, within BWI76_RS10910at 2304.617 kb on - strand, within BWI76_RS10910at 2304.623 kb on + strand, within BWI76_RS10910

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Per-strain Table

Position Strand Gene LocusTag Fraction Chloramphenicol 0.001 mg/ml
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2,302,254 + +0.1
2,302,370 + -0.7
2,302,378 - +0.3
2,302,393 - +2.4
2,302,487 - BWI76_RS10895 0.17 +1.2
2,302,686 + BWI76_RS10895 0.44 -0.3
2,302,718 + BWI76_RS10895 0.48 -1.0
2,302,897 + BWI76_RS10895 0.72 -0.5
2,302,924 + BWI76_RS10895 0.76 +0.3
2,303,027 - +0.6
2,303,148 - -1.6
2,303,172 - -0.7
2,303,210 - BWI76_RS10900 0.16 +2.2
2,303,288 + BWI76_RS10900 0.30 +2.2
2,303,339 - BWI76_RS10900 0.39 -0.2
2,303,596 + BWI76_RS10900 0.85 +0.6
2,303,642 + -0.0
2,303,654 - -1.5
2,303,867 - BWI76_RS10905 0.20 +0.0
2,304,027 + BWI76_RS10905 0.52 -0.3
2,304,056 - BWI76_RS10905 0.58 -1.1
2,304,163 - BWI76_RS10905 0.80 +3.3
2,304,209 + BWI76_RS10905 0.89 +0.0
2,304,289 + +0.6
2,304,303 + +0.0
2,304,312 - -1.8
2,304,342 - +0.8
2,304,517 - -1.2
2,304,547 + -0.8
2,304,557 + -1.4
2,304,565 - -1.2
2,304,609 + BWI76_RS10910 0.14 -0.3
2,304,617 - BWI76_RS10910 0.17 +0.5
2,304,623 + BWI76_RS10910 0.19 -1.8

Or see this region's nucleotide sequence