Experiment: Chloramphenicol 0.001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS10890 and BWI76_RS10895 are separated by 84 nucleotides BWI76_RS10895 and BWI76_RS10900 are separated by 22 nucleotides BWI76_RS10900 and BWI76_RS10905 are separated by 91 nucleotides BWI76_RS10905 and BWI76_RS10910 are separated by 301 nucleotides
BWI76_RS10890: BWI76_RS10890 - glyoxylate/hydroxypyruvate reductase A, at 2,301,340 to 2,302,278
_RS10890
BWI76_RS10895: BWI76_RS10895 - phosphatase, at 2,302,363 to 2,303,100
_RS10895
BWI76_RS10900: BWI76_RS10900 - putative oxidoreductase, at 2,303,123 to 2,303,677
_RS10900
BWI76_RS10905: BWI76_RS10905 - hypothetical protein, at 2,303,769 to 2,304,263
_RS10905
BWI76_RS10910: BWI76_RS10910 - hypothetical protein, at 2,304,565 to 2,304,870
_RS10910
Position (kb)
2303
2304 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 2302.254 kb on + strand at 2302.370 kb on + strand at 2302.378 kb on - strand at 2302.393 kb on - strand at 2302.487 kb on - strand, within BWI76_RS10895 at 2302.686 kb on + strand, within BWI76_RS10895 at 2302.718 kb on + strand, within BWI76_RS10895 at 2302.897 kb on + strand, within BWI76_RS10895 at 2302.924 kb on + strand, within BWI76_RS10895 at 2303.027 kb on - strand at 2303.148 kb on - strand at 2303.172 kb on - strand at 2303.210 kb on - strand, within BWI76_RS10900 at 2303.288 kb on + strand, within BWI76_RS10900 at 2303.339 kb on - strand, within BWI76_RS10900 at 2303.596 kb on + strand, within BWI76_RS10900 at 2303.642 kb on + strand at 2303.654 kb on - strand at 2303.867 kb on - strand, within BWI76_RS10905 at 2304.027 kb on + strand, within BWI76_RS10905 at 2304.056 kb on - strand, within BWI76_RS10905 at 2304.163 kb on - strand, within BWI76_RS10905 at 2304.209 kb on + strand, within BWI76_RS10905 at 2304.289 kb on + strand at 2304.303 kb on + strand at 2304.312 kb on - strand at 2304.342 kb on - strand at 2304.517 kb on - strand at 2304.547 kb on + strand at 2304.557 kb on + strand at 2304.565 kb on - strand at 2304.609 kb on + strand, within BWI76_RS10910 at 2304.617 kb on - strand, within BWI76_RS10910 at 2304.623 kb on + strand, within BWI76_RS10910
Per-strain Table
Position Strand Gene LocusTag Fraction Chloramphenicol 0.001 mg/ml remove 2,302,254 + +0.1 2,302,370 + -0.7 2,302,378 - +0.3 2,302,393 - +2.4 2,302,487 - BWI76_RS10895 0.17 +1.2 2,302,686 + BWI76_RS10895 0.44 -0.3 2,302,718 + BWI76_RS10895 0.48 -1.0 2,302,897 + BWI76_RS10895 0.72 -0.5 2,302,924 + BWI76_RS10895 0.76 +0.3 2,303,027 - +0.6 2,303,148 - -1.6 2,303,172 - -0.7 2,303,210 - BWI76_RS10900 0.16 +2.2 2,303,288 + BWI76_RS10900 0.30 +2.2 2,303,339 - BWI76_RS10900 0.39 -0.2 2,303,596 + BWI76_RS10900 0.85 +0.6 2,303,642 + -0.0 2,303,654 - -1.5 2,303,867 - BWI76_RS10905 0.20 +0.0 2,304,027 + BWI76_RS10905 0.52 -0.3 2,304,056 - BWI76_RS10905 0.58 -1.1 2,304,163 - BWI76_RS10905 0.80 +3.3 2,304,209 + BWI76_RS10905 0.89 +0.0 2,304,289 + +0.6 2,304,303 + +0.0 2,304,312 - -1.8 2,304,342 - +0.8 2,304,517 - -1.2 2,304,547 + -0.8 2,304,557 + -1.4 2,304,565 - -1.2 2,304,609 + BWI76_RS10910 0.14 -0.3 2,304,617 - BWI76_RS10910 0.17 +0.5 2,304,623 + BWI76_RS10910 0.19 -1.8
Or see this region's nucleotide sequence