Experiment: Chloramphenicol 0.001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS10300 and BWI76_RS10305 are separated by 167 nucleotides BWI76_RS10305 and BWI76_RS10310 are separated by 100 nucleotides BWI76_RS10310 and BWI76_RS10315 are separated by 201 nucleotides
BWI76_RS10300: BWI76_RS10300 - MFS transporter, at 2,180,727 to 2,182,163
_RS10300
BWI76_RS10305: BWI76_RS10305 - transposase, at 2,182,331 to 2,182,927
_RS10305
BWI76_RS10310: BWI76_RS10310 - DNA-binding transcriptional regulator RamA, at 2,183,028 to 2,183,372
_RS10310
BWI76_RS10315: BWI76_RS10315 - MFS transporter, at 2,183,574 to 2,184,866
_RS10315
Position (kb)
2182
2183 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3
4
5 at 2181.390 kb on + strand, within BWI76_RS10300 at 2181.390 kb on + strand, within BWI76_RS10300 at 2181.508 kb on - strand, within BWI76_RS10300 at 2181.516 kb on + strand, within BWI76_RS10300 at 2181.586 kb on - strand, within BWI76_RS10300 at 2181.598 kb on - strand, within BWI76_RS10300 at 2181.844 kb on + strand, within BWI76_RS10300 at 2181.950 kb on - strand, within BWI76_RS10300 at 2182.024 kb on - strand at 2182.246 kb on - strand at 2182.410 kb on + strand, within BWI76_RS10305 at 2182.495 kb on + strand, within BWI76_RS10305 at 2182.622 kb on + strand, within BWI76_RS10305 at 2182.622 kb on + strand, within BWI76_RS10305 at 2182.640 kb on + strand, within BWI76_RS10305 at 2182.651 kb on + strand, within BWI76_RS10305 at 2182.681 kb on + strand, within BWI76_RS10305 at 2182.681 kb on + strand, within BWI76_RS10305 at 2182.681 kb on + strand, within BWI76_RS10305 at 2182.705 kb on + strand, within BWI76_RS10305 at 2182.705 kb on + strand, within BWI76_RS10305 at 2182.711 kb on + strand, within BWI76_RS10305 at 2182.751 kb on + strand, within BWI76_RS10305 at 2182.751 kb on + strand, within BWI76_RS10305 at 2182.772 kb on + strand, within BWI76_RS10305 at 2182.930 kb on - strand at 2182.930 kb on - strand at 2182.943 kb on + strand at 2183.093 kb on + strand, within BWI76_RS10310 at 2183.098 kb on + strand, within BWI76_RS10310 at 2183.098 kb on + strand, within BWI76_RS10310 at 2183.098 kb on + strand, within BWI76_RS10310 at 2183.166 kb on + strand, within BWI76_RS10310 at 2183.170 kb on - strand, within BWI76_RS10310 at 2183.183 kb on + strand, within BWI76_RS10310 at 2183.183 kb on - strand, within BWI76_RS10310 at 2183.262 kb on - strand, within BWI76_RS10310 at 2183.272 kb on + strand, within BWI76_RS10310 at 2183.272 kb on + strand, within BWI76_RS10310 at 2183.280 kb on - strand, within BWI76_RS10310 at 2183.280 kb on - strand, within BWI76_RS10310 at 2183.280 kb on - strand, within BWI76_RS10310 at 2183.291 kb on - strand, within BWI76_RS10310 at 2183.291 kb on - strand, within BWI76_RS10310 at 2183.384 kb on - strand at 2183.390 kb on + strand at 2183.397 kb on + strand at 2183.398 kb on - strand at 2183.405 kb on - strand at 2183.405 kb on - strand at 2183.405 kb on - strand at 2183.405 kb on - strand at 2183.406 kb on + strand at 2183.444 kb on + strand at 2183.452 kb on - strand at 2183.465 kb on + strand at 2183.473 kb on - strand at 2183.473 kb on - strand at 2183.473 kb on - strand at 2183.473 kb on - strand at 2183.473 kb on - strand at 2183.473 kb on - strand at 2183.473 kb on - strand at 2183.572 kb on + strand at 2183.580 kb on - strand at 2183.659 kb on + strand at 2183.702 kb on - strand at 2183.702 kb on - strand at 2183.720 kb on + strand, within BWI76_RS10315 at 2183.728 kb on - strand, within BWI76_RS10315 at 2183.759 kb on - strand, within BWI76_RS10315 at 2183.770 kb on - strand, within BWI76_RS10315 at 2183.777 kb on - strand, within BWI76_RS10315 at 2183.777 kb on - strand, within BWI76_RS10315 at 2183.777 kb on - strand, within BWI76_RS10315 at 2183.777 kb on - strand, within BWI76_RS10315 at 2183.782 kb on + strand, within BWI76_RS10315 at 2183.790 kb on - strand, within BWI76_RS10315 at 2183.839 kb on + strand, within BWI76_RS10315 at 2183.839 kb on + strand, within BWI76_RS10315 at 2183.847 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Chloramphenicol 0.001 mg/ml remove 2,181,390 + BWI76_RS10300 0.46 -1.5 2,181,390 + BWI76_RS10300 0.46 -0.2 2,181,508 - BWI76_RS10300 0.54 -0.6 2,181,516 + BWI76_RS10300 0.55 -0.2 2,181,586 - BWI76_RS10300 0.60 +0.5 2,181,598 - BWI76_RS10300 0.61 +2.8 2,181,844 + BWI76_RS10300 0.78 -1.8 2,181,950 - BWI76_RS10300 0.85 +0.6 2,182,024 - -0.0 2,182,246 - +0.1 2,182,410 + BWI76_RS10305 0.13 +0.9 2,182,495 + BWI76_RS10305 0.27 +2.2 2,182,622 + BWI76_RS10305 0.49 +5.3 2,182,622 + BWI76_RS10305 0.49 +4.7 2,182,640 + BWI76_RS10305 0.52 +4.9 2,182,651 + BWI76_RS10305 0.54 +3.3 2,182,681 + BWI76_RS10305 0.59 +2.9 2,182,681 + BWI76_RS10305 0.59 +2.4 2,182,681 + BWI76_RS10305 0.59 +1.8 2,182,705 + BWI76_RS10305 0.63 +2.9 2,182,705 + BWI76_RS10305 0.63 +3.0 2,182,711 + BWI76_RS10305 0.64 +3.6 2,182,751 + BWI76_RS10305 0.70 +5.0 2,182,751 + BWI76_RS10305 0.70 +5.2 2,182,772 + BWI76_RS10305 0.74 +4.7 2,182,930 - +0.3 2,182,930 - +0.6 2,182,943 + -1.9 2,183,093 + BWI76_RS10310 0.19 +0.1 2,183,098 + BWI76_RS10310 0.20 -0.0 2,183,098 + BWI76_RS10310 0.20 -0.1 2,183,098 + BWI76_RS10310 0.20 -0.7 2,183,166 + BWI76_RS10310 0.40 -1.2 2,183,170 - BWI76_RS10310 0.41 -0.2 2,183,183 + BWI76_RS10310 0.45 -1.0 2,183,183 - BWI76_RS10310 0.45 -0.5 2,183,262 - BWI76_RS10310 0.68 +3.4 2,183,272 + BWI76_RS10310 0.71 -1.3 2,183,272 + BWI76_RS10310 0.71 -0.2 2,183,280 - BWI76_RS10310 0.73 -0.0 2,183,280 - BWI76_RS10310 0.73 +1.2 2,183,280 - BWI76_RS10310 0.73 +2.5 2,183,291 - BWI76_RS10310 0.76 -2.0 2,183,291 - BWI76_RS10310 0.76 +0.2 2,183,384 - -1.5 2,183,390 + -0.3 2,183,397 + +0.0 2,183,398 - -0.9 2,183,405 - -0.8 2,183,405 - -0.0 2,183,405 - -1.5 2,183,405 - -1.4 2,183,406 + -0.7 2,183,444 + +1.6 2,183,452 - +0.3 2,183,465 + +1.3 2,183,473 - +0.1 2,183,473 - +0.3 2,183,473 - +1.6 2,183,473 - -0.6 2,183,473 - +1.5 2,183,473 - -2.8 2,183,473 - +0.6 2,183,572 + -1.5 2,183,580 - +0.2 2,183,659 + -1.0 2,183,702 - +0.9 2,183,702 - -0.7 2,183,720 + BWI76_RS10315 0.11 -1.3 2,183,728 - BWI76_RS10315 0.12 -1.8 2,183,759 - BWI76_RS10315 0.14 -1.8 2,183,770 - BWI76_RS10315 0.15 -0.0 2,183,777 - BWI76_RS10315 0.16 -0.8 2,183,777 - BWI76_RS10315 0.16 -1.4 2,183,777 - BWI76_RS10315 0.16 -1.0 2,183,777 - BWI76_RS10315 0.16 -0.5 2,183,782 + BWI76_RS10315 0.16 -2.1 2,183,790 - BWI76_RS10315 0.17 +0.3 2,183,839 + BWI76_RS10315 0.20 -2.0 2,183,839 + BWI76_RS10315 0.20 +0.5 2,183,847 - +0.2
Or see this region's nucleotide sequence