Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS09885

Experiment: Chloramphenicol 0.001 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS09880 and BWI76_RS09885 are separated by 308 nucleotidesBWI76_RS09885 and BWI76_RS09890 are separated by 328 nucleotides BWI76_RS09880: BWI76_RS09880 - asparagine--tRNA ligase, at 2,075,865 to 2,077,265 _RS09880 BWI76_RS09885: BWI76_RS09885 - nicotinate phosphoribosyltransferase, at 2,077,574 to 2,078,776 _RS09885 BWI76_RS09890: BWI76_RS09890 - aminopeptidase N, at 2,079,105 to 2,081,720 _RS09890 Position (kb) 2077 2078 2079Strain fitness (log2 ratio) -2 -1 0 1 2 3at 2077.468 kb on - strandat 2077.506 kb on - strandat 2077.608 kb on + strandat 2077.609 kb on - strandat 2077.616 kb on - strandat 2077.633 kb on - strandat 2077.664 kb on + strandat 2077.664 kb on + strandat 2077.683 kb on + strandat 2077.697 kb on - strand, within BWI76_RS09885at 2077.748 kb on + strand, within BWI76_RS09885at 2077.756 kb on - strand, within BWI76_RS09885at 2077.757 kb on - strand, within BWI76_RS09885at 2077.890 kb on + strand, within BWI76_RS09885at 2078.016 kb on + strand, within BWI76_RS09885at 2078.147 kb on - strand, within BWI76_RS09885at 2078.212 kb on - strand, within BWI76_RS09885at 2078.229 kb on - strand, within BWI76_RS09885at 2078.325 kb on - strand, within BWI76_RS09885at 2078.325 kb on - strand, within BWI76_RS09885at 2078.471 kb on + strand, within BWI76_RS09885at 2078.551 kb on - strand, within BWI76_RS09885at 2078.581 kb on + strand, within BWI76_RS09885at 2078.606 kb on - strand, within BWI76_RS09885at 2078.606 kb on - strand, within BWI76_RS09885at 2078.632 kb on - strand, within BWI76_RS09885at 2078.681 kb on - strandat 2078.693 kb on + strandat 2078.701 kb on - strandat 2078.701 kb on - strandat 2078.719 kb on + strandat 2078.792 kb on + strandat 2078.795 kb on - strandat 2078.849 kb on - strandat 2078.880 kb on + strandat 2078.957 kb on - strandat 2078.957 kb on - strandat 2078.959 kb on + strandat 2079.059 kb on + strandat 2079.070 kb on + strandat 2079.189 kb on - strandat 2079.255 kb on - strandat 2079.302 kb on + strandat 2079.315 kb on + strandat 2079.373 kb on + strand, within BWI76_RS09890at 2079.442 kb on - strand, within BWI76_RS09890at 2079.594 kb on + strand, within BWI76_RS09890at 2079.594 kb on + strand, within BWI76_RS09890

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Per-strain Table

Position Strand Gene LocusTag Fraction Chloramphenicol 0.001 mg/ml
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2,077,468 - +0.4
2,077,506 - +0.8
2,077,608 + -0.9
2,077,609 - -0.2
2,077,616 - +0.4
2,077,633 - +0.8
2,077,664 + +1.5
2,077,664 + +2.8
2,077,683 + -0.8
2,077,697 - BWI76_RS09885 0.10 -0.3
2,077,748 + BWI76_RS09885 0.14 -0.0
2,077,756 - BWI76_RS09885 0.15 +1.9
2,077,757 - BWI76_RS09885 0.15 +0.3
2,077,890 + BWI76_RS09885 0.26 +1.2
2,078,016 + BWI76_RS09885 0.37 -0.6
2,078,147 - BWI76_RS09885 0.48 -0.8
2,078,212 - BWI76_RS09885 0.53 -0.9
2,078,229 - BWI76_RS09885 0.54 +1.4
2,078,325 - BWI76_RS09885 0.62 +1.8
2,078,325 - BWI76_RS09885 0.62 -0.2
2,078,471 + BWI76_RS09885 0.75 -0.1
2,078,551 - BWI76_RS09885 0.81 +0.1
2,078,581 + BWI76_RS09885 0.84 -0.2
2,078,606 - BWI76_RS09885 0.86 -0.6
2,078,606 - BWI76_RS09885 0.86 -0.8
2,078,632 - BWI76_RS09885 0.88 +0.2
2,078,681 - -2.3
2,078,693 + +0.0
2,078,701 - -0.2
2,078,701 - -0.2
2,078,719 + +0.2
2,078,792 + -1.1
2,078,795 - +0.4
2,078,849 - -1.5
2,078,880 + -0.0
2,078,957 - -0.8
2,078,957 - +0.1
2,078,959 + -0.8
2,079,059 + -0.8
2,079,070 + +0.9
2,079,189 - +1.3
2,079,255 - -1.9
2,079,302 + -0.2
2,079,315 + +1.3
2,079,373 + BWI76_RS09890 0.10 -1.2
2,079,442 - BWI76_RS09890 0.13 +2.5
2,079,594 + BWI76_RS09890 0.19 +1.3
2,079,594 + BWI76_RS09890 0.19 -0.0

Or see this region's nucleotide sequence