Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS09710

Experiment: Chloramphenicol 0.001 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS09700 and BWI76_RS09705 are separated by 42 nucleotidesBWI76_RS09705 and BWI76_RS09710 overlap by 1 nucleotidesBWI76_RS09710 and BWI76_RS09715 are separated by 12 nucleotides BWI76_RS09700: BWI76_RS09700 - PTS IIA-like nitrogen-regulatory protein PtsN, at 2,034,090 to 2,034,527 _RS09700 BWI76_RS09705: BWI76_RS09705 - transketolase, at 2,034,570 to 2,035,481 _RS09705 BWI76_RS09710: BWI76_RS09710 - transketolase, at 2,035,481 to 2,036,278 _RS09710 BWI76_RS09715: BWI76_RS09715 - hypothetical protein, at 2,036,291 to 2,037,556 _RS09715 Position (kb) 2035 2036 2037Strain fitness (log2 ratio) -2 -1 0 1at 2034.588 kb on - strandat 2034.588 kb on - strandat 2034.774 kb on + strand, within BWI76_RS09705at 2035.011 kb on + strand, within BWI76_RS09705at 2035.019 kb on - strand, within BWI76_RS09705at 2035.019 kb on - strand, within BWI76_RS09705at 2035.080 kb on + strand, within BWI76_RS09705at 2035.382 kb on + strand, within BWI76_RS09705at 2035.448 kb on + strandat 2035.605 kb on + strand, within BWI76_RS09710at 2035.965 kb on + strand, within BWI76_RS09710at 2036.065 kb on + strand, within BWI76_RS09710at 2036.263 kb on - strandat 2036.407 kb on + strandat 2036.608 kb on - strand, within BWI76_RS09715at 2036.608 kb on - strand, within BWI76_RS09715at 2036.663 kb on - strand, within BWI76_RS09715at 2036.895 kb on + strand, within BWI76_RS09715at 2036.998 kb on - strand, within BWI76_RS09715at 2037.174 kb on + strand, within BWI76_RS09715at 2037.228 kb on - strand, within BWI76_RS09715

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Per-strain Table

Position Strand Gene LocusTag Fraction Chloramphenicol 0.001 mg/ml
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2,034,588 - +0.7
2,034,588 - -1.1
2,034,774 + BWI76_RS09705 0.22 -0.1
2,035,011 + BWI76_RS09705 0.48 -0.4
2,035,019 - BWI76_RS09705 0.49 -2.1
2,035,019 - BWI76_RS09705 0.49 +0.3
2,035,080 + BWI76_RS09705 0.56 +0.3
2,035,382 + BWI76_RS09705 0.89 +0.8
2,035,448 + -0.5
2,035,605 + BWI76_RS09710 0.16 -1.6
2,035,965 + BWI76_RS09710 0.61 -0.8
2,036,065 + BWI76_RS09710 0.73 -2.5
2,036,263 - -0.3
2,036,407 + -0.6
2,036,608 - BWI76_RS09715 0.25 -0.6
2,036,608 - BWI76_RS09715 0.25 -0.3
2,036,663 - BWI76_RS09715 0.29 +0.3
2,036,895 + BWI76_RS09715 0.48 -0.5
2,036,998 - BWI76_RS09715 0.56 +1.5
2,037,174 + BWI76_RS09715 0.70 +0.0
2,037,228 - BWI76_RS09715 0.74 +0.1

Or see this region's nucleotide sequence