Experiment: Chloramphenicol 0.001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS09170 and BWI76_RS09175 are separated by 149 nucleotides BWI76_RS09175 and BWI76_RS09180 are separated by 157 nucleotides BWI76_RS09180 and BWI76_RS09185 are separated by 50 nucleotides
BWI76_RS09170: BWI76_RS09170 - MFS transporter, at 1,937,085 to 1,938,287
_RS09170
BWI76_RS09175: BWI76_RS09175 - DNA-binding transcriptional regulator, at 1,938,437 to 1,938,979
_RS09175
BWI76_RS09180: BWI76_RS09180 - hypothetical protein, at 1,939,137 to 1,939,406
_RS09180
BWI76_RS09185: BWI76_RS09185 - integrase, at 1,939,457 to 1,940,503
_RS09185
Position (kb) 1939
1940 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 1938.411 kb on - strand at 1938.524 kb on + strand, within BWI76_RS09175 at 1938.524 kb on - strand, within BWI76_RS09175 at 1938.599 kb on - strand, within BWI76_RS09175 at 1938.615 kb on + strand, within BWI76_RS09175 at 1938.727 kb on + strand, within BWI76_RS09175 at 1938.735 kb on - strand, within BWI76_RS09175 at 1938.735 kb on - strand, within BWI76_RS09175 at 1938.752 kb on - strand, within BWI76_RS09175 at 1938.837 kb on + strand, within BWI76_RS09175 at 1938.845 kb on - strand, within BWI76_RS09175 at 1938.845 kb on - strand, within BWI76_RS09175 at 1938.953 kb on + strand at 1939.094 kb on - strand at 1939.211 kb on - strand, within BWI76_RS09180 at 1939.350 kb on + strand, within BWI76_RS09180 at 1939.376 kb on + strand, within BWI76_RS09180 at 1939.376 kb on + strand, within BWI76_RS09180 at 1939.376 kb on + strand, within BWI76_RS09180 at 1939.376 kb on + strand, within BWI76_RS09180 at 1939.376 kb on + strand, within BWI76_RS09180 at 1939.384 kb on - strand at 1939.384 kb on - strand at 1939.384 kb on - strand at 1939.384 kb on - strand at 1939.466 kb on + strand at 1939.509 kb on + strand at 1939.517 kb on - strand at 1939.525 kb on - strand at 1939.525 kb on - strand at 1939.535 kb on - strand at 1939.549 kb on + strand at 1939.657 kb on + strand, within BWI76_RS09185 at 1939.695 kb on + strand, within BWI76_RS09185 at 1939.703 kb on - strand, within BWI76_RS09185 at 1939.792 kb on + strand, within BWI76_RS09185 at 1939.849 kb on + strand, within BWI76_RS09185 at 1939.850 kb on - strand, within BWI76_RS09185 at 1939.873 kb on + strand, within BWI76_RS09185 at 1940.055 kb on + strand, within BWI76_RS09185 at 1940.135 kb on - strand, within BWI76_RS09185 at 1940.168 kb on - strand, within BWI76_RS09185 at 1940.278 kb on + strand, within BWI76_RS09185 at 1940.349 kb on + strand, within BWI76_RS09185 at 1940.369 kb on - strand, within BWI76_RS09185 at 1940.384 kb on - strand, within BWI76_RS09185
Per-strain Table
Position Strand Gene LocusTag Fraction Chloramphenicol 0.001 mg/ml remove 1,938,411 - -0.6 1,938,524 + BWI76_RS09175 0.16 -0.2 1,938,524 - BWI76_RS09175 0.16 +0.2 1,938,599 - BWI76_RS09175 0.30 -1.7 1,938,615 + BWI76_RS09175 0.33 -1.9 1,938,727 + BWI76_RS09175 0.53 +1.9 1,938,735 - BWI76_RS09175 0.55 -0.6 1,938,735 - BWI76_RS09175 0.55 +0.3 1,938,752 - BWI76_RS09175 0.58 -1.0 1,938,837 + BWI76_RS09175 0.74 +0.3 1,938,845 - BWI76_RS09175 0.75 +0.6 1,938,845 - BWI76_RS09175 0.75 -1.6 1,938,953 + +2.4 1,939,094 - -0.8 1,939,211 - BWI76_RS09180 0.27 +0.1 1,939,350 + BWI76_RS09180 0.79 +1.8 1,939,376 + BWI76_RS09180 0.89 -0.4 1,939,376 + BWI76_RS09180 0.89 +3.9 1,939,376 + BWI76_RS09180 0.89 +1.8 1,939,376 + BWI76_RS09180 0.89 +2.0 1,939,376 + BWI76_RS09180 0.89 +2.2 1,939,384 - +0.5 1,939,384 - -0.2 1,939,384 - -0.1 1,939,384 - -0.6 1,939,466 + -0.8 1,939,509 + +0.2 1,939,517 - +1.0 1,939,525 - -0.1 1,939,525 - -0.4 1,939,535 - -0.6 1,939,549 + -0.6 1,939,657 + BWI76_RS09185 0.19 +0.8 1,939,695 + BWI76_RS09185 0.23 +0.8 1,939,703 - BWI76_RS09185 0.23 +0.2 1,939,792 + BWI76_RS09185 0.32 -0.2 1,939,849 + BWI76_RS09185 0.37 -0.2 1,939,850 - BWI76_RS09185 0.38 +0.6 1,939,873 + BWI76_RS09185 0.40 -0.5 1,940,055 + BWI76_RS09185 0.57 +1.3 1,940,135 - BWI76_RS09185 0.65 +0.3 1,940,168 - BWI76_RS09185 0.68 -1.2 1,940,278 + BWI76_RS09185 0.78 -0.5 1,940,349 + BWI76_RS09185 0.85 +0.6 1,940,369 - BWI76_RS09185 0.87 -0.7 1,940,384 - BWI76_RS09185 0.89 +0.4
Or see this region's nucleotide sequence