Experiment: Chloramphenicol 0.001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS08720 and BWI76_RS08725 overlap by 4 nucleotides BWI76_RS08725 and BWI76_RS08730 are separated by 53 nucleotides BWI76_RS08730 and BWI76_RS08735 are separated by 143 nucleotides
BWI76_RS08720: BWI76_RS08720 - imidazolonepropionase, at 1,836,606 to 1,837,823
_RS08720
BWI76_RS08725: BWI76_RS08725 - Formiminoglutamase (EC 3.5.3.8) (from data) , at 1,837,820 to 1,838,776
_RS08725
BWI76_RS08730: BWI76_RS08730 - histidine utilization repressor, at 1,838,830 to 1,839,555
_RS08730
BWI76_RS08735: BWI76_RS08735 - Urocanate hydratase (EC 4.2.1.49) (from data) , at 1,839,699 to 1,841,387
_RS08735
Position (kb)
1837
1838
1839 Strain fitness (log2 ratio)
-2
-1
0
1 at 1837.299 kb on + strand, within BWI76_RS08720 at 1837.602 kb on + strand, within BWI76_RS08720 at 1837.653 kb on - strand, within BWI76_RS08720 at 1837.885 kb on - strand at 1838.181 kb on + strand, within BWI76_RS08725 at 1838.229 kb on + strand, within BWI76_RS08725 at 1838.484 kb on - strand, within BWI76_RS08725 at 1838.668 kb on + strand, within BWI76_RS08725 at 1838.668 kb on + strand, within BWI76_RS08725 at 1839.414 kb on - strand, within BWI76_RS08730 at 1839.414 kb on - strand, within BWI76_RS08730 at 1839.482 kb on - strand, within BWI76_RS08730 at 1839.640 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Chloramphenicol 0.001 mg/ml remove 1,837,299 + BWI76_RS08720 0.57 -2.4 1,837,602 + BWI76_RS08720 0.82 +0.7 1,837,653 - BWI76_RS08720 0.86 -0.7 1,837,885 - +0.0 1,838,181 + BWI76_RS08725 0.38 -2.0 1,838,229 + BWI76_RS08725 0.43 -0.9 1,838,484 - BWI76_RS08725 0.69 -1.0 1,838,668 + BWI76_RS08725 0.89 -0.7 1,838,668 + BWI76_RS08725 0.89 -0.7 1,839,414 - BWI76_RS08730 0.80 -0.1 1,839,414 - BWI76_RS08730 0.80 +0.6 1,839,482 - BWI76_RS08730 0.90 -0.4 1,839,640 - -0.4
Or see this region's nucleotide sequence