Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS07965

Experiment: Chloramphenicol 0.001 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS07960 and BWI76_RS07965 are separated by 92 nucleotidesBWI76_RS07965 and BWI76_RS07970 are separated by 71 nucleotidesBWI76_RS07970 and BWI76_RS07975 are separated by 43 nucleotides BWI76_RS07960: BWI76_RS07960 - ribonuclease I, at 1,690,817 to 1,691,611 _RS07960 BWI76_RS07965: BWI76_RS07965 - anaerobic C4-dicarboxylate transporter DcuC, at 1,691,704 to 1,693,077 _RS07965 BWI76_RS07970: BWI76_RS07970 - hypothetical protein, at 1,693,149 to 1,693,329 _RS07970 BWI76_RS07975: BWI76_RS07975 - phospholipid:lipid A palmitoyltransferase, at 1,693,373 to 1,693,942 _RS07975 Position (kb) 1691 1692 1693 1694Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1691.003 kb on - strand, within BWI76_RS07960at 1691.024 kb on - strand, within BWI76_RS07960at 1691.291 kb on + strand, within BWI76_RS07960at 1691.296 kb on + strand, within BWI76_RS07960at 1691.438 kb on - strand, within BWI76_RS07960at 1691.558 kb on + strandat 1691.625 kb on + strandat 1691.703 kb on - strandat 1691.772 kb on - strandat 1691.839 kb on - strandat 1691.957 kb on + strand, within BWI76_RS07965at 1692.092 kb on - strand, within BWI76_RS07965at 1692.105 kb on + strand, within BWI76_RS07965at 1692.351 kb on + strand, within BWI76_RS07965at 1692.662 kb on - strand, within BWI76_RS07965at 1692.913 kb on - strand, within BWI76_RS07965at 1692.961 kb on + strandat 1692.961 kb on + strandat 1692.969 kb on - strandat 1693.102 kb on + strandat 1693.217 kb on + strand, within BWI76_RS07970at 1693.225 kb on - strand, within BWI76_RS07970at 1693.278 kb on + strand, within BWI76_RS07970at 1693.278 kb on + strand, within BWI76_RS07970at 1693.428 kb on - strandat 1693.554 kb on - strand, within BWI76_RS07975at 1693.554 kb on - strand, within BWI76_RS07975at 1693.668 kb on - strand, within BWI76_RS07975at 1693.703 kb on - strand, within BWI76_RS07975at 1693.729 kb on + strand, within BWI76_RS07975at 1693.729 kb on + strand, within BWI76_RS07975at 1693.886 kb on - strandat 1693.917 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Chloramphenicol 0.001 mg/ml
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1,691,003 - BWI76_RS07960 0.23 -0.4
1,691,024 - BWI76_RS07960 0.26 -1.6
1,691,291 + BWI76_RS07960 0.60 -0.9
1,691,296 + BWI76_RS07960 0.60 -0.1
1,691,438 - BWI76_RS07960 0.78 -0.3
1,691,558 + +0.3
1,691,625 + +2.3
1,691,703 - +0.2
1,691,772 - -3.0
1,691,839 - +0.5
1,691,957 + BWI76_RS07965 0.18 -0.5
1,692,092 - BWI76_RS07965 0.28 -0.7
1,692,105 + BWI76_RS07965 0.29 +0.8
1,692,351 + BWI76_RS07965 0.47 -0.9
1,692,662 - BWI76_RS07965 0.70 -1.1
1,692,913 - BWI76_RS07965 0.88 -0.8
1,692,961 + -0.5
1,692,961 + +0.4
1,692,969 - -0.2
1,693,102 + +0.0
1,693,217 + BWI76_RS07970 0.38 -0.3
1,693,225 - BWI76_RS07970 0.42 -0.1
1,693,278 + BWI76_RS07970 0.71 +1.2
1,693,278 + BWI76_RS07970 0.71 -0.4
1,693,428 - -0.9
1,693,554 - BWI76_RS07975 0.32 -2.8
1,693,554 - BWI76_RS07975 0.32 +0.5
1,693,668 - BWI76_RS07975 0.52 +0.5
1,693,703 - BWI76_RS07975 0.58 +0.8
1,693,729 + BWI76_RS07975 0.62 -0.1
1,693,729 + BWI76_RS07975 0.62 -0.4
1,693,886 - -0.9
1,693,917 - -1.6

Or see this region's nucleotide sequence