Experiment: Chloramphenicol 0.001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS07885 and BWI76_RS07890 overlap by 1 nucleotides BWI76_RS07890 and BWI76_RS07895 overlap by 4 nucleotides BWI76_RS07895 and BWI76_RS07900 overlap by 4 nucleotides
BWI76_RS07885: BWI76_RS07885 - sugar ABC transporter permease, at 1,673,543 to 1,674,544
_RS07885
BWI76_RS07890: BWI76_RS07890 - putative ABC-type sugar transport system permease component, at 1,674,544 to 1,675,530
_RS07890
BWI76_RS07895: BWI76_RS07895 - sugar ABC transporter ATPase, at 1,675,527 to 1,677,080
_RS07895
BWI76_RS07900: BWI76_RS07900 - sugar ABC transporter substrate-binding protein, at 1,677,077 to 1,678,057
_RS07900
Position (kb)
1675
1676
1677
1678 Strain fitness (log2 ratio)
-2
-1
0
1
2
3
4 at 1674.667 kb on + strand, within BWI76_RS07890 at 1674.667 kb on + strand, within BWI76_RS07890 at 1674.667 kb on + strand, within BWI76_RS07890 at 1674.675 kb on - strand, within BWI76_RS07890 at 1674.675 kb on - strand, within BWI76_RS07890 at 1674.897 kb on - strand at 1675.166 kb on - strand, within BWI76_RS07890 at 1675.234 kb on - strand, within BWI76_RS07890 at 1675.280 kb on - strand, within BWI76_RS07890 at 1675.309 kb on + strand, within BWI76_RS07890 at 1675.347 kb on + strand, within BWI76_RS07890 at 1675.355 kb on - strand, within BWI76_RS07890 at 1675.431 kb on + strand, within BWI76_RS07890 at 1676.047 kb on - strand, within BWI76_RS07895 at 1676.302 kb on + strand, within BWI76_RS07895 at 1676.310 kb on - strand, within BWI76_RS07895 at 1676.310 kb on - strand, within BWI76_RS07895 at 1676.320 kb on - strand, within BWI76_RS07895 at 1676.973 kb on - strand at 1677.159 kb on - strand at 1677.341 kb on - strand, within BWI76_RS07900 at 1677.363 kb on - strand, within BWI76_RS07900 at 1677.376 kb on + strand, within BWI76_RS07900 at 1677.384 kb on - strand, within BWI76_RS07900 at 1677.394 kb on - strand, within BWI76_RS07900 at 1677.404 kb on + strand, within BWI76_RS07900 at 1677.407 kb on - strand, within BWI76_RS07900 at 1677.412 kb on - strand, within BWI76_RS07900 at 1677.418 kb on + strand, within BWI76_RS07900 at 1677.419 kb on + strand, within BWI76_RS07900 at 1677.423 kb on + strand, within BWI76_RS07900 at 1677.425 kb on + strand, within BWI76_RS07900 at 1677.431 kb on - strand, within BWI76_RS07900 at 1677.433 kb on + strand, within BWI76_RS07900 at 1677.433 kb on + strand, within BWI76_RS07900 at 1677.433 kb on - strand, within BWI76_RS07900 at 1677.441 kb on - strand, within BWI76_RS07900 at 1677.441 kb on - strand, within BWI76_RS07900 at 1677.449 kb on - strand, within BWI76_RS07900 at 1677.465 kb on - strand, within BWI76_RS07900 at 1677.467 kb on - strand, within BWI76_RS07900 at 1677.476 kb on + strand, within BWI76_RS07900 at 1677.478 kb on + strand, within BWI76_RS07900 at 1677.484 kb on - strand, within BWI76_RS07900 at 1677.485 kb on - strand, within BWI76_RS07900 at 1677.495 kb on - strand, within BWI76_RS07900 at 1677.531 kb on + strand, within BWI76_RS07900 at 1677.549 kb on - strand, within BWI76_RS07900 at 1677.590 kb on - strand, within BWI76_RS07900 at 1677.614 kb on + strand, within BWI76_RS07900 at 1677.632 kb on - strand, within BWI76_RS07900 at 1677.632 kb on - strand, within BWI76_RS07900 at 1677.643 kb on - strand, within BWI76_RS07900 at 1677.646 kb on + strand, within BWI76_RS07900 at 1677.646 kb on + strand, within BWI76_RS07900 at 1677.654 kb on + strand, within BWI76_RS07900 at 1677.654 kb on - strand, within BWI76_RS07900 at 1677.654 kb on - strand, within BWI76_RS07900 at 1677.654 kb on - strand, within BWI76_RS07900 at 1677.655 kb on - strand, within BWI76_RS07900 at 1677.662 kb on - strand, within BWI76_RS07900 at 1677.662 kb on - strand, within BWI76_RS07900 at 1677.669 kb on - strand, within BWI76_RS07900 at 1677.674 kb on - strand, within BWI76_RS07900 at 1677.792 kb on + strand, within BWI76_RS07900 at 1677.800 kb on - strand, within BWI76_RS07900 at 1677.801 kb on - strand at 1677.830 kb on + strand, within BWI76_RS07900 at 1677.830 kb on + strand, within BWI76_RS07900 at 1677.858 kb on - strand, within BWI76_RS07900 at 1677.858 kb on - strand, within BWI76_RS07900 at 1677.893 kb on + strand, within BWI76_RS07900 at 1677.894 kb on + strand, within BWI76_RS07900 at 1677.894 kb on + strand, within BWI76_RS07900 at 1677.900 kb on + strand, within BWI76_RS07900 at 1677.900 kb on + strand, within BWI76_RS07900 at 1677.900 kb on + strand, within BWI76_RS07900 at 1677.902 kb on + strand, within BWI76_RS07900 at 1677.902 kb on + strand, within BWI76_RS07900 at 1677.902 kb on + strand, within BWI76_RS07900 at 1677.902 kb on + strand, within BWI76_RS07900 at 1677.902 kb on + strand, within BWI76_RS07900 at 1677.902 kb on + strand, within BWI76_RS07900 at 1677.902 kb on + strand, within BWI76_RS07900 at 1677.902 kb on + strand, within BWI76_RS07900 at 1677.902 kb on - strand, within BWI76_RS07900 at 1677.908 kb on + strand, within BWI76_RS07900 at 1677.908 kb on + strand, within BWI76_RS07900 at 1677.908 kb on - strand, within BWI76_RS07900 at 1677.908 kb on - strand, within BWI76_RS07900 at 1677.910 kb on - strand, within BWI76_RS07900 at 1677.910 kb on - strand, within BWI76_RS07900 at 1677.910 kb on - strand, within BWI76_RS07900 at 1677.910 kb on - strand at 1677.910 kb on - strand, within BWI76_RS07900 at 1677.910 kb on - strand, within BWI76_RS07900 at 1677.910 kb on - strand, within BWI76_RS07900 at 1677.918 kb on + strand, within BWI76_RS07900 at 1677.918 kb on + strand, within BWI76_RS07900 at 1677.921 kb on + strand, within BWI76_RS07900 at 1677.921 kb on + strand, within BWI76_RS07900 at 1677.926 kb on - strand, within BWI76_RS07900 at 1677.926 kb on - strand, within BWI76_RS07900 at 1677.926 kb on - strand, within BWI76_RS07900 at 1677.926 kb on - strand, within BWI76_RS07900 at 1677.936 kb on - strand, within BWI76_RS07900 at 1677.936 kb on - strand, within BWI76_RS07900 at 1677.938 kb on + strand, within BWI76_RS07900 at 1677.951 kb on - strand, within BWI76_RS07900 at 1677.971 kb on + strand at 1677.980 kb on - strand at 1677.986 kb on + strand at 1677.993 kb on + strand at 1677.994 kb on + strand at 1678.001 kb on - strand at 1678.001 kb on - strand at 1678.002 kb on - strand at 1678.004 kb on + strand at 1678.008 kb on + strand at 1678.016 kb on - strand at 1678.018 kb on + strand at 1678.018 kb on + strand at 1678.018 kb on + strand at 1678.018 kb on + strand at 1678.026 kb on - strand at 1678.067 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Chloramphenicol 0.001 mg/ml remove 1,674,667 + BWI76_RS07890 0.12 +0.2 1,674,667 + BWI76_RS07890 0.12 -0.1 1,674,667 + BWI76_RS07890 0.12 +0.1 1,674,675 - BWI76_RS07890 0.13 -0.3 1,674,675 - BWI76_RS07890 0.13 +1.1 1,674,897 - +1.3 1,675,166 - BWI76_RS07890 0.63 -0.0 1,675,234 - BWI76_RS07890 0.70 -0.2 1,675,280 - BWI76_RS07890 0.75 +0.2 1,675,309 + BWI76_RS07890 0.78 +0.1 1,675,347 + BWI76_RS07890 0.81 +1.0 1,675,355 - BWI76_RS07890 0.82 -0.7 1,675,431 + BWI76_RS07890 0.90 -0.5 1,676,047 - BWI76_RS07895 0.33 +0.3 1,676,302 + BWI76_RS07895 0.50 +0.1 1,676,310 - BWI76_RS07895 0.50 +0.3 1,676,310 - BWI76_RS07895 0.50 +4.4 1,676,320 - BWI76_RS07895 0.51 +2.1 1,676,973 - +0.5 1,677,159 - +0.2 1,677,341 - BWI76_RS07900 0.27 -0.2 1,677,363 - BWI76_RS07900 0.29 -0.6 1,677,376 + BWI76_RS07900 0.30 -0.0 1,677,384 - BWI76_RS07900 0.31 -0.4 1,677,394 - BWI76_RS07900 0.32 -0.3 1,677,404 + BWI76_RS07900 0.33 +1.1 1,677,407 - BWI76_RS07900 0.34 -0.7 1,677,412 - BWI76_RS07900 0.34 +0.5 1,677,418 + BWI76_RS07900 0.35 +3.4 1,677,419 + BWI76_RS07900 0.35 +1.0 1,677,423 + BWI76_RS07900 0.35 -0.6 1,677,425 + BWI76_RS07900 0.35 -0.6 1,677,431 - BWI76_RS07900 0.36 -0.6 1,677,433 + BWI76_RS07900 0.36 -0.5 1,677,433 + BWI76_RS07900 0.36 +0.1 1,677,433 - BWI76_RS07900 0.36 +1.5 1,677,441 - BWI76_RS07900 0.37 +0.2 1,677,441 - BWI76_RS07900 0.37 +0.5 1,677,449 - BWI76_RS07900 0.38 -0.6 1,677,465 - BWI76_RS07900 0.40 -0.3 1,677,467 - BWI76_RS07900 0.40 -0.0 1,677,476 + BWI76_RS07900 0.41 +1.4 1,677,478 + BWI76_RS07900 0.41 -1.8 1,677,484 - BWI76_RS07900 0.41 -0.4 1,677,485 - BWI76_RS07900 0.42 -1.7 1,677,495 - BWI76_RS07900 0.43 -0.7 1,677,531 + BWI76_RS07900 0.46 +0.5 1,677,549 - BWI76_RS07900 0.48 -0.8 1,677,590 - BWI76_RS07900 0.52 -0.4 1,677,614 + BWI76_RS07900 0.55 -0.4 1,677,632 - BWI76_RS07900 0.57 -0.5 1,677,632 - BWI76_RS07900 0.57 -1.9 1,677,643 - BWI76_RS07900 0.58 +0.1 1,677,646 + BWI76_RS07900 0.58 +1.1 1,677,646 + BWI76_RS07900 0.58 +1.6 1,677,654 + BWI76_RS07900 0.59 -0.0 1,677,654 - BWI76_RS07900 0.59 +0.7 1,677,654 - BWI76_RS07900 0.59 -2.0 1,677,654 - BWI76_RS07900 0.59 -0.9 1,677,655 - BWI76_RS07900 0.59 -1.3 1,677,662 - BWI76_RS07900 0.60 -0.5 1,677,662 - BWI76_RS07900 0.60 -0.0 1,677,669 - BWI76_RS07900 0.60 +0.3 1,677,674 - BWI76_RS07900 0.61 +0.6 1,677,792 + BWI76_RS07900 0.73 -0.8 1,677,800 - BWI76_RS07900 0.74 -0.2 1,677,801 - +1.9 1,677,830 + BWI76_RS07900 0.77 +1.5 1,677,830 + BWI76_RS07900 0.77 -0.2 1,677,858 - BWI76_RS07900 0.80 +0.1 1,677,858 - BWI76_RS07900 0.80 -1.0 1,677,893 + BWI76_RS07900 0.83 +0.2 1,677,894 + BWI76_RS07900 0.83 +0.7 1,677,894 + BWI76_RS07900 0.83 -0.0 1,677,900 + BWI76_RS07900 0.84 +2.0 1,677,900 + BWI76_RS07900 0.84 +0.2 1,677,900 + BWI76_RS07900 0.84 -0.4 1,677,902 + BWI76_RS07900 0.84 -0.3 1,677,902 + BWI76_RS07900 0.84 +0.9 1,677,902 + BWI76_RS07900 0.84 -1.2 1,677,902 + BWI76_RS07900 0.84 -0.1 1,677,902 + BWI76_RS07900 0.84 -0.7 1,677,902 + BWI76_RS07900 0.84 +0.1 1,677,902 + BWI76_RS07900 0.84 -0.4 1,677,902 + BWI76_RS07900 0.84 +3.7 1,677,902 - BWI76_RS07900 0.84 +4.4 1,677,908 + BWI76_RS07900 0.85 +0.7 1,677,908 + BWI76_RS07900 0.85 -1.0 1,677,908 - BWI76_RS07900 0.85 +1.0 1,677,908 - BWI76_RS07900 0.85 +4.2 1,677,910 - BWI76_RS07900 0.85 -1.0 1,677,910 - BWI76_RS07900 0.85 +0.1 1,677,910 - BWI76_RS07900 0.85 -1.0 1,677,910 - +0.3 1,677,910 - BWI76_RS07900 0.85 -1.9 1,677,910 - BWI76_RS07900 0.85 +1.5 1,677,910 - BWI76_RS07900 0.85 +0.5 1,677,918 + BWI76_RS07900 0.86 -0.8 1,677,918 + BWI76_RS07900 0.86 +1.3 1,677,921 + BWI76_RS07900 0.86 +0.9 1,677,921 + BWI76_RS07900 0.86 +0.5 1,677,926 - BWI76_RS07900 0.87 -0.5 1,677,926 - BWI76_RS07900 0.87 -0.5 1,677,926 - BWI76_RS07900 0.87 -1.1 1,677,926 - BWI76_RS07900 0.87 +1.6 1,677,936 - BWI76_RS07900 0.88 +2.9 1,677,936 - BWI76_RS07900 0.88 +0.2 1,677,938 + BWI76_RS07900 0.88 +0.6 1,677,951 - BWI76_RS07900 0.89 +0.9 1,677,971 + -0.5 1,677,980 - -1.0 1,677,986 + -0.5 1,677,993 + -0.4 1,677,994 + -0.6 1,678,001 - -1.1 1,678,001 - +0.5 1,678,002 - -0.9 1,678,004 + +1.1 1,678,008 + +0.0 1,678,016 - -0.2 1,678,018 + -0.9 1,678,018 + -0.3 1,678,018 + -0.3 1,678,018 + -0.8 1,678,026 - +1.1 1,678,067 - -0.5
Or see this region's nucleotide sequence