Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS07515

Experiment: Chloramphenicol 0.001 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS07505 and BWI76_RS07510 are separated by 173 nucleotidesBWI76_RS07510 and BWI76_RS07515 are separated by 52 nucleotidesBWI76_RS07515 and BWI76_RS07520 are separated by 324 nucleotides BWI76_RS07505: BWI76_RS07505 - hydrophobe/amphiphile efflux-1 family RND transporter, at 1,585,689 to 1,588,781 _RS07505 BWI76_RS07510: BWI76_RS07510 - hypothetical protein, at 1,588,955 to 1,589,674 _RS07510 BWI76_RS07515: BWI76_RS07515 - glutamate--cysteine ligase, at 1,589,727 to 1,590,842 _RS07515 BWI76_RS07520: BWI76_RS07520 - ABC transporter substrate-binding protein, at 1,591,167 to 1,592,831 _RS07520 Position (kb) 1589 1590 1591Strain fitness (log2 ratio) -2 -1 0 1 2at 1588.804 kb on - strandat 1588.880 kb on + strandat 1589.081 kb on - strand, within BWI76_RS07510at 1589.166 kb on + strand, within BWI76_RS07510at 1589.166 kb on + strand, within BWI76_RS07510at 1589.233 kb on + strand, within BWI76_RS07510at 1589.691 kb on + strandat 1589.716 kb on - strandat 1589.732 kb on - strandat 1589.846 kb on + strand, within BWI76_RS07515at 1589.991 kb on - strand, within BWI76_RS07515at 1590.009 kb on - strand, within BWI76_RS07515at 1590.213 kb on - strand, within BWI76_RS07515at 1590.588 kb on + strand, within BWI76_RS07515at 1590.715 kb on + strand, within BWI76_RS07515at 1590.723 kb on - strand, within BWI76_RS07515at 1590.742 kb on - strandat 1590.744 kb on + strandat 1590.786 kb on - strandat 1590.793 kb on - strandat 1590.837 kb on + strandat 1590.852 kb on + strandat 1590.860 kb on - strandat 1590.872 kb on + strandat 1590.872 kb on + strandat 1590.872 kb on + strandat 1590.872 kb on + strandat 1590.872 kb on + strandat 1590.872 kb on + strandat 1590.872 kb on + strandat 1590.872 kb on + strandat 1590.872 kb on + strandat 1590.872 kb on + strandat 1590.880 kb on - strandat 1590.880 kb on - strandat 1590.880 kb on - strandat 1590.880 kb on - strandat 1590.880 kb on - strandat 1590.880 kb on - strandat 1590.880 kb on - strandat 1590.880 kb on - strandat 1590.880 kb on - strandat 1590.880 kb on - strandat 1590.880 kb on - strandat 1590.880 kb on - strandat 1590.880 kb on - strandat 1590.880 kb on - strandat 1590.880 kb on - strandat 1590.880 kb on - strandat 1590.880 kb on - strandat 1590.880 kb on - strandat 1590.880 kb on - strandat 1590.880 kb on - strandat 1590.880 kb on - strandat 1590.880 kb on - strandat 1590.880 kb on - strandat 1590.882 kb on - strandat 1590.886 kb on + strandat 1590.946 kb on + strandat 1590.954 kb on - strandat 1590.973 kb on - strandat 1590.979 kb on - strandat 1590.983 kb on - strandat 1591.105 kb on + strandat 1591.123 kb on - strandat 1591.156 kb on + strandat 1591.162 kb on + strandat 1591.162 kb on + strandat 1591.162 kb on + strandat 1591.162 kb on + strandat 1591.165 kb on - strandat 1591.170 kb on - strandat 1591.170 kb on - strandat 1591.205 kb on - strandat 1591.207 kb on + strandat 1591.207 kb on + strandat 1591.215 kb on - strandat 1591.215 kb on - strandat 1591.215 kb on - strandat 1591.215 kb on - strandat 1591.251 kb on + strandat 1591.256 kb on + strandat 1591.256 kb on + strandat 1591.256 kb on + strandat 1591.256 kb on + strandat 1591.259 kb on - strandat 1591.259 kb on - strandat 1591.264 kb on - strandat 1591.264 kb on - strandat 1591.264 kb on - strandat 1591.264 kb on - strandat 1591.264 kb on - strandat 1591.264 kb on - strandat 1591.403 kb on - strand, within BWI76_RS07520at 1591.520 kb on - strand, within BWI76_RS07520at 1591.556 kb on - strand, within BWI76_RS07520at 1591.586 kb on + strand, within BWI76_RS07520at 1591.622 kb on - strand, within BWI76_RS07520at 1591.663 kb on + strand, within BWI76_RS07520at 1591.687 kb on + strand, within BWI76_RS07520at 1591.715 kb on + strand, within BWI76_RS07520

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Per-strain Table

Position Strand Gene LocusTag Fraction Chloramphenicol 0.001 mg/ml
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1,588,804 - -0.1
1,588,880 + +0.0
1,589,081 - BWI76_RS07510 0.17 +1.2
1,589,166 + BWI76_RS07510 0.29 +1.0
1,589,166 + BWI76_RS07510 0.29 +1.4
1,589,233 + BWI76_RS07510 0.39 -0.9
1,589,691 + -0.2
1,589,716 - -0.2
1,589,732 - -0.2
1,589,846 + BWI76_RS07515 0.11 -0.6
1,589,991 - BWI76_RS07515 0.24 -0.7
1,590,009 - BWI76_RS07515 0.25 +0.4
1,590,213 - BWI76_RS07515 0.44 -0.4
1,590,588 + BWI76_RS07515 0.77 -0.2
1,590,715 + BWI76_RS07515 0.89 -1.3
1,590,723 - BWI76_RS07515 0.89 -0.2
1,590,742 - -0.4
1,590,744 + +0.8
1,590,786 - -0.8
1,590,793 - +1.2
1,590,837 + +1.3
1,590,852 + -1.7
1,590,860 - +0.4
1,590,872 + +0.4
1,590,872 + +0.4
1,590,872 + +0.8
1,590,872 + +0.3
1,590,872 + +1.3
1,590,872 + +0.0
1,590,872 + -0.7
1,590,872 + +0.5
1,590,872 + +0.7
1,590,872 + -0.0
1,590,880 - +0.3
1,590,880 - +0.4
1,590,880 - -0.1
1,590,880 - +0.7
1,590,880 - -2.4
1,590,880 - -0.3
1,590,880 - -0.3
1,590,880 - +0.1
1,590,880 - +0.1
1,590,880 - +0.5
1,590,880 - +0.2
1,590,880 - -0.5
1,590,880 - -0.4
1,590,880 - +2.7
1,590,880 - +1.3
1,590,880 - +0.8
1,590,880 - +0.5
1,590,880 - +0.4
1,590,880 - +0.8
1,590,880 - -0.9
1,590,880 - -0.2
1,590,880 - -0.0
1,590,880 - -0.5
1,590,882 - +0.2
1,590,886 + -0.0
1,590,946 + -0.3
1,590,954 - +0.6
1,590,973 - +0.5
1,590,979 - -1.7
1,590,983 - +0.3
1,591,105 + -0.5
1,591,123 - -0.3
1,591,156 + +0.3
1,591,162 + +1.0
1,591,162 + +0.1
1,591,162 + +1.3
1,591,162 + -0.9
1,591,165 - +0.3
1,591,170 - -0.9
1,591,170 - -0.7
1,591,205 - +1.2
1,591,207 + -0.3
1,591,207 + -0.5
1,591,215 - -1.2
1,591,215 - -1.3
1,591,215 - +0.9
1,591,215 - +0.4
1,591,251 + -0.4
1,591,256 + -0.1
1,591,256 + -0.5
1,591,256 + +0.1
1,591,256 + -0.5
1,591,259 - +0.4
1,591,259 - +0.2
1,591,264 - +0.0
1,591,264 - +0.3
1,591,264 - +0.1
1,591,264 - -0.5
1,591,264 - +0.1
1,591,264 - +0.6
1,591,403 - BWI76_RS07520 0.14 -0.5
1,591,520 - BWI76_RS07520 0.21 -0.3
1,591,556 - BWI76_RS07520 0.23 +0.2
1,591,586 + BWI76_RS07520 0.25 +2.4
1,591,622 - BWI76_RS07520 0.27 -1.0
1,591,663 + BWI76_RS07520 0.30 -1.0
1,591,687 + BWI76_RS07520 0.31 -0.8
1,591,715 + BWI76_RS07520 0.33 -0.3

Or see this region's nucleotide sequence