Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS05530

Experiment: Chloramphenicol 0.001 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS05525 and BWI76_RS05530 are separated by 159 nucleotidesBWI76_RS05530 and BWI76_RS05535 are separated by 2 nucleotidesBWI76_RS05535 and BWI76_RS05540 are separated by 111 nucleotides BWI76_RS05525: BWI76_RS05525 - glycerophosphodiester phosphodiesterase, at 1,157,926 to 1,158,783 _RS05525 BWI76_RS05530: BWI76_RS05530 - DNA polymerase IV, at 1,158,943 to 1,159,998 _RS05530 BWI76_RS05535: BWI76_RS05535 - acyltransferase, at 1,160,001 to 1,160,492 _RS05535 BWI76_RS05540: BWI76_RS05540 - cytosol nonspecific dipeptidase, at 1,160,604 to 1,162,061 _RS05540 Position (kb) 1158 1159 1160Strain fitness (log2 ratio) -2 -1 0 1 2 3at 1158.058 kb on + strand, within BWI76_RS05525at 1158.058 kb on + strand, within BWI76_RS05525at 1158.329 kb on - strand, within BWI76_RS05525at 1158.330 kb on - strand, within BWI76_RS05525at 1158.542 kb on - strand, within BWI76_RS05525at 1158.945 kb on + strandat 1158.964 kb on + strandat 1158.964 kb on + strandat 1159.004 kb on + strandat 1159.004 kb on + strandat 1159.004 kb on + strandat 1159.051 kb on - strand, within BWI76_RS05530at 1159.164 kb on - strand, within BWI76_RS05530at 1159.410 kb on - strand, within BWI76_RS05530at 1159.482 kb on + strand, within BWI76_RS05530at 1159.523 kb on - strand, within BWI76_RS05530at 1159.528 kb on + strand, within BWI76_RS05530at 1159.549 kb on + strand, within BWI76_RS05530at 1159.886 kb on - strand, within BWI76_RS05530at 1159.944 kb on + strandat 1159.969 kb on - strandat 1159.984 kb on + strandat 1159.991 kb on + strandat 1160.492 kb on + strandat 1160.586 kb on + strandat 1160.594 kb on - strandat 1160.644 kb on + strandat 1160.649 kb on + strandat 1160.649 kb on + strandat 1160.652 kb on - strandat 1160.715 kb on + strandat 1160.763 kb on + strand, within BWI76_RS05540at 1160.763 kb on + strand, within BWI76_RS05540at 1160.763 kb on + strand, within BWI76_RS05540at 1160.810 kb on - strand, within BWI76_RS05540

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Per-strain Table

Position Strand Gene LocusTag Fraction Chloramphenicol 0.001 mg/ml
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1,158,058 + BWI76_RS05525 0.15 -0.1
1,158,058 + BWI76_RS05525 0.15 +2.1
1,158,329 - BWI76_RS05525 0.47 -0.6
1,158,330 - BWI76_RS05525 0.47 +0.4
1,158,542 - BWI76_RS05525 0.72 -0.3
1,158,945 + -0.5
1,158,964 + -0.5
1,158,964 + +0.3
1,159,004 + -1.1
1,159,004 + +0.9
1,159,004 + +2.1
1,159,051 - BWI76_RS05530 0.10 -0.6
1,159,164 - BWI76_RS05530 0.21 +0.7
1,159,410 - BWI76_RS05530 0.44 -0.3
1,159,482 + BWI76_RS05530 0.51 +0.4
1,159,523 - BWI76_RS05530 0.55 -1.7
1,159,528 + BWI76_RS05530 0.55 -0.4
1,159,549 + BWI76_RS05530 0.57 +1.8
1,159,886 - BWI76_RS05530 0.89 -0.1
1,159,944 + -0.4
1,159,969 - +0.8
1,159,984 + -1.3
1,159,991 + -0.9
1,160,492 + +0.3
1,160,586 + -0.1
1,160,594 - -0.4
1,160,644 + -0.4
1,160,649 + -1.9
1,160,649 + +0.2
1,160,652 - +0.1
1,160,715 + +1.8
1,160,763 + BWI76_RS05540 0.11 -0.5
1,160,763 + BWI76_RS05540 0.11 +3.5
1,160,763 + BWI76_RS05540 0.11 +0.8
1,160,810 - BWI76_RS05540 0.14 -1.0

Or see this region's nucleotide sequence