Experiment: Chloramphenicol 0.001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS04640 and BWI76_RS04645 are separated by 37 nucleotides BWI76_RS04645 and BWI76_RS04650 are separated by 33 nucleotides BWI76_RS04650 and BWI76_RS04655 are separated by 11 nucleotides BWI76_RS04655 and BWI76_RS04660 are separated by 10 nucleotides
BWI76_RS04640: BWI76_RS04640 - LysR family transcriptional regulator, at 966,808 to 967,704
_RS04640
BWI76_RS04645: BWI76_RS04645 - 3-dehydroquinase, at 967,742 to 968,497
_RS04645
BWI76_RS04650: BWI76_RS04650 - MFS transporter, at 968,531 to 969,745
_RS04650
BWI76_RS04655: BWI76_RS04655 - shikimate dehydrogenase, at 969,757 to 970,620
_RS04655
BWI76_RS04660: BWI76_RS04660 - 2,4-dienoyl-CoA reductase, at 970,631 to 972,664
_RS04660
Position (kb) 968
969
970 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 967.571 kb on + strand, within BWI76_RS04640 at 967.610 kb on + strand, within BWI76_RS04640 at 967.633 kb on - strand at 967.644 kb on + strand at 967.716 kb on + strand at 967.719 kb on - strand at 967.719 kb on - strand at 967.719 kb on - strand at 967.725 kb on - strand at 967.802 kb on + strand at 967.817 kb on + strand at 967.954 kb on - strand, within BWI76_RS04645 at 967.954 kb on - strand, within BWI76_RS04645 at 967.993 kb on + strand, within BWI76_RS04645 at 968.047 kb on - strand, within BWI76_RS04645 at 968.083 kb on - strand, within BWI76_RS04645 at 968.114 kb on - strand, within BWI76_RS04645 at 968.154 kb on - strand, within BWI76_RS04645 at 968.174 kb on + strand, within BWI76_RS04645 at 968.333 kb on - strand, within BWI76_RS04645 at 968.426 kb on + strand at 968.481 kb on - strand at 968.738 kb on + strand, within BWI76_RS04650 at 968.770 kb on - strand, within BWI76_RS04650 at 968.794 kb on - strand, within BWI76_RS04650 at 968.818 kb on - strand, within BWI76_RS04650 at 968.990 kb on - strand, within BWI76_RS04650 at 969.100 kb on + strand, within BWI76_RS04650 at 969.100 kb on + strand, within BWI76_RS04650 at 969.108 kb on - strand, within BWI76_RS04650 at 969.137 kb on - strand, within BWI76_RS04650 at 969.272 kb on + strand, within BWI76_RS04650 at 969.347 kb on - strand, within BWI76_RS04650 at 969.347 kb on - strand, within BWI76_RS04650 at 969.347 kb on - strand, within BWI76_RS04650 at 969.352 kb on + strand, within BWI76_RS04650 at 969.662 kb on - strand at 969.778 kb on - strand at 969.825 kb on + strand at 969.825 kb on + strand at 969.921 kb on + strand, within BWI76_RS04655 at 970.025 kb on - strand at 970.287 kb on - strand, within BWI76_RS04655 at 970.356 kb on + strand, within BWI76_RS04655 at 970.458 kb on - strand, within BWI76_RS04655 at 970.545 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Chloramphenicol 0.001 mg/ml remove 967,571 + BWI76_RS04640 0.85 -0.2 967,610 + BWI76_RS04640 0.89 -0.1 967,633 - +1.2 967,644 + -0.5 967,716 + -0.7 967,719 - -0.4 967,719 - +0.2 967,719 - -0.4 967,725 - +0.4 967,802 + -0.0 967,817 + +1.2 967,954 - BWI76_RS04645 0.28 -0.4 967,954 - BWI76_RS04645 0.28 -1.1 967,993 + BWI76_RS04645 0.33 -0.1 968,047 - BWI76_RS04645 0.40 -1.2 968,083 - BWI76_RS04645 0.45 -0.7 968,114 - BWI76_RS04645 0.49 +0.7 968,154 - BWI76_RS04645 0.54 -1.1 968,174 + BWI76_RS04645 0.57 -0.3 968,333 - BWI76_RS04645 0.78 +0.3 968,426 + -1.4 968,481 - +0.2 968,738 + BWI76_RS04650 0.17 -0.2 968,770 - BWI76_RS04650 0.20 +0.1 968,794 - BWI76_RS04650 0.22 -1.7 968,818 - BWI76_RS04650 0.24 +0.9 968,990 - BWI76_RS04650 0.38 +1.2 969,100 + BWI76_RS04650 0.47 +1.8 969,100 + BWI76_RS04650 0.47 -0.1 969,108 - BWI76_RS04650 0.47 -0.3 969,137 - BWI76_RS04650 0.50 +0.7 969,272 + BWI76_RS04650 0.61 +0.8 969,347 - BWI76_RS04650 0.67 +0.3 969,347 - BWI76_RS04650 0.67 +1.2 969,347 - BWI76_RS04650 0.67 +0.5 969,352 + BWI76_RS04650 0.68 +2.6 969,662 - -0.2 969,778 - +1.6 969,825 + -0.6 969,825 + -0.1 969,921 + BWI76_RS04655 0.19 -0.2 970,025 - +1.2 970,287 - BWI76_RS04655 0.61 +1.2 970,356 + BWI76_RS04655 0.69 +0.1 970,458 - BWI76_RS04655 0.81 +0.5 970,545 - -3.2
Or see this region's nucleotide sequence