Experiment: Minimal media pH7
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_00335 and AO356_00340 are separated by 222 nucleotides AO356_00340 and AO356_00345 are separated by 63 nucleotides AO356_00345 and AO356_00350 are separated by 32 nucleotides
AO356_00335: AO356_00335 - integrase, at 65,556 to 67,397
_00335
AO356_00340: AO356_00340 - tRNA-Gly, at 67,620 to 67,695
_00340
AO356_00345: AO356_00345 - CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase, at 67,759 to 68,319
_00345
AO356_00350: AO356_00350 - excinuclease ABC subunit C, at 68,352 to 70,175
_00350
Position (kb) 65
66
67
68 Strain fitness (log2 ratio) -2
-1
0
1
2 at 64.589 kb on + strand at 64.590 kb on - strand at 64.590 kb on - strand at 64.597 kb on - strand at 64.711 kb on + strand at 64.711 kb on + strand at 64.712 kb on - strand at 64.712 kb on - strand at 64.712 kb on - strand at 64.740 kb on + strand at 64.741 kb on - strand at 64.755 kb on + strand at 64.755 kb on + strand at 64.756 kb on - strand at 64.756 kb on - strand at 64.816 kb on - strand at 64.816 kb on - strand at 64.830 kb on + strand at 64.830 kb on + strand at 64.830 kb on + strand at 64.830 kb on + strand at 64.830 kb on + strand at 64.830 kb on + strand at 64.830 kb on + strand at 64.830 kb on + strand at 64.831 kb on - strand at 64.831 kb on - strand at 64.831 kb on - strand at 64.831 kb on - strand at 64.836 kb on + strand at 64.837 kb on - strand at 64.837 kb on - strand at 64.837 kb on - strand at 64.843 kb on + strand at 64.844 kb on - strand at 64.844 kb on - strand at 64.949 kb on - strand at 64.989 kb on + strand at 64.989 kb on + strand at 64.989 kb on + strand at 65.008 kb on + strand at 65.009 kb on - strand at 65.023 kb on - strand at 65.048 kb on + strand at 65.048 kb on + strand at 65.048 kb on + strand at 65.049 kb on - strand at 65.049 kb on - strand at 65.137 kb on + strand at 65.150 kb on - strand at 65.243 kb on - strand at 65.266 kb on + strand at 65.384 kb on + strand at 65.405 kb on + strand at 65.433 kb on + strand at 65.434 kb on - strand at 65.478 kb on + strand at 65.479 kb on - strand at 65.503 kb on + strand at 65.503 kb on + strand at 65.504 kb on - strand at 65.568 kb on + strand at 65.569 kb on - strand at 65.569 kb on - strand at 65.596 kb on - strand at 65.613 kb on - strand at 65.615 kb on + strand at 65.615 kb on + strand at 65.615 kb on + strand at 65.616 kb on - strand at 65.616 kb on - strand at 65.644 kb on - strand at 65.660 kb on + strand at 65.661 kb on - strand at 65.721 kb on + strand at 65.721 kb on + strand at 65.722 kb on - strand at 65.722 kb on - strand at 65.890 kb on + strand, within AO356_00335 at 65.890 kb on + strand, within AO356_00335 at 65.890 kb on + strand, within AO356_00335 at 65.891 kb on - strand, within AO356_00335 at 65.891 kb on - strand, within AO356_00335 at 65.922 kb on + strand, within AO356_00335 at 65.922 kb on + strand, within AO356_00335 at 65.922 kb on + strand, within AO356_00335 at 65.922 kb on + strand, within AO356_00335 at 65.922 kb on + strand, within AO356_00335 at 65.922 kb on + strand, within AO356_00335 at 65.922 kb on + strand, within AO356_00335 at 65.923 kb on - strand, within AO356_00335 at 65.923 kb on - strand, within AO356_00335 at 65.923 kb on - strand, within AO356_00335 at 65.923 kb on - strand, within AO356_00335 at 65.923 kb on - strand, within AO356_00335 at 65.923 kb on - strand, within AO356_00335 at 65.923 kb on - strand, within AO356_00335 at 65.923 kb on - strand, within AO356_00335 at 65.923 kb on - strand, within AO356_00335 at 65.974 kb on - strand, within AO356_00335 at 65.974 kb on - strand, within AO356_00335 at 66.067 kb on + strand, within AO356_00335 at 66.067 kb on + strand, within AO356_00335 at 66.068 kb on - strand, within AO356_00335 at 66.068 kb on - strand, within AO356_00335 at 66.068 kb on - strand, within AO356_00335 at 66.106 kb on - strand, within AO356_00335 at 66.157 kb on - strand, within AO356_00335 at 66.174 kb on + strand, within AO356_00335 at 66.174 kb on + strand, within AO356_00335 at 66.175 kb on - strand, within AO356_00335 at 66.227 kb on - strand, within AO356_00335 at 66.227 kb on - strand, within AO356_00335 at 66.241 kb on + strand, within AO356_00335 at 66.241 kb on + strand, within AO356_00335 at 66.384 kb on + strand, within AO356_00335 at 66.448 kb on + strand, within AO356_00335 at 66.448 kb on + strand, within AO356_00335 at 66.448 kb on + strand, within AO356_00335 at 66.448 kb on + strand, within AO356_00335 at 66.449 kb on - strand, within AO356_00335 at 66.449 kb on - strand, within AO356_00335 at 66.449 kb on - strand, within AO356_00335 at 66.523 kb on + strand, within AO356_00335 at 66.523 kb on + strand, within AO356_00335 at 66.523 kb on + strand, within AO356_00335 at 66.523 kb on + strand, within AO356_00335 at 66.523 kb on + strand, within AO356_00335 at 66.524 kb on - strand, within AO356_00335 at 66.524 kb on - strand, within AO356_00335 at 66.524 kb on - strand, within AO356_00335 at 66.568 kb on - strand, within AO356_00335 at 66.568 kb on - strand, within AO356_00335 at 66.719 kb on - strand, within AO356_00335 at 66.936 kb on + strand, within AO356_00335 at 66.936 kb on + strand, within AO356_00335 at 66.942 kb on + strand, within AO356_00335 at 66.943 kb on - strand, within AO356_00335 at 66.967 kb on + strand, within AO356_00335 at 66.967 kb on + strand, within AO356_00335 at 66.967 kb on + strand, within AO356_00335 at 66.967 kb on + strand, within AO356_00335 at 66.968 kb on - strand, within AO356_00335 at 66.971 kb on + strand, within AO356_00335 at 66.971 kb on + strand, within AO356_00335 at 66.971 kb on + strand, within AO356_00335 at 66.972 kb on - strand, within AO356_00335 at 66.972 kb on - strand, within AO356_00335 at 67.153 kb on + strand, within AO356_00335 at 67.153 kb on + strand, within AO356_00335 at 67.153 kb on + strand, within AO356_00335 at 67.181 kb on + strand, within AO356_00335 at 67.182 kb on - strand, within AO356_00335 at 67.231 kb on + strand at 67.231 kb on + strand at 67.274 kb on - strand at 67.345 kb on + strand at 67.345 kb on + strand at 67.346 kb on - strand at 67.506 kb on + strand at 67.507 kb on - strand at 67.519 kb on + strand at 67.564 kb on - strand at 67.717 kb on + strand at 67.718 kb on - strand at 68.354 kb on - strand at 68.375 kb on - strand at 68.375 kb on - strand at 68.375 kb on - strand at 68.397 kb on - strand at 68.397 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Minimal media pH7 remove 64,589 + +1.0 64,590 - -0.3 64,590 - -0.4 64,597 - -0.0 64,711 + +0.8 64,711 + +0.3 64,712 - +0.4 64,712 - +0.4 64,712 - +0.2 64,740 + +0.5 64,741 - -0.3 64,755 + +1.0 64,755 + -0.9 64,756 - +0.2 64,756 - +0.3 64,816 - -0.3 64,816 - -0.2 64,830 + -0.3 64,830 + -0.9 64,830 + -1.1 64,830 + +0.4 64,830 + +0.5 64,830 + -0.5 64,830 + -0.8 64,830 + +0.3 64,831 - -0.7 64,831 - +0.1 64,831 - +1.3 64,831 - +0.1 64,836 + +0.3 64,837 - -1.1 64,837 - +0.8 64,837 - +2.1 64,843 + +0.4 64,844 - -0.2 64,844 - -0.6 64,949 - +0.3 64,989 + +0.3 64,989 + +0.1 64,989 + +0.0 65,008 + +0.6 65,009 - -0.4 65,023 - +0.3 65,048 + +1.0 65,048 + +1.0 65,048 + +0.6 65,049 - +0.7 65,049 - +0.6 65,137 + +1.1 65,150 - +0.9 65,243 - -0.5 65,266 + +0.4 65,384 + -0.4 65,405 + +0.1 65,433 + -0.3 65,434 - +0.6 65,478 + -1.3 65,479 - +0.4 65,503 + +0.3 65,503 + +0.3 65,504 - -0.2 65,568 + +0.3 65,569 - +0.4 65,569 - -0.7 65,596 - -0.8 65,613 - -0.3 65,615 + +0.8 65,615 + +0.3 65,615 + +0.1 65,616 - +0.7 65,616 - +0.7 65,644 - -1.0 65,660 + -0.8 65,661 - -0.5 65,721 + -1.2 65,721 + -0.2 65,722 - +0.7 65,722 - -1.1 65,890 + AO356_00335 0.18 -0.2 65,890 + AO356_00335 0.18 +0.2 65,890 + AO356_00335 0.18 +0.4 65,891 - AO356_00335 0.18 +0.2 65,891 - AO356_00335 0.18 +0.9 65,922 + AO356_00335 0.20 -0.3 65,922 + AO356_00335 0.20 +0.5 65,922 + AO356_00335 0.20 -0.7 65,922 + AO356_00335 0.20 -0.3 65,922 + AO356_00335 0.20 -0.1 65,922 + AO356_00335 0.20 +0.3 65,922 + AO356_00335 0.20 -0.1 65,923 - AO356_00335 0.20 -1.4 65,923 - AO356_00335 0.20 +0.9 65,923 - AO356_00335 0.20 -0.1 65,923 - AO356_00335 0.20 +0.6 65,923 - AO356_00335 0.20 +1.1 65,923 - AO356_00335 0.20 +0.1 65,923 - AO356_00335 0.20 +0.4 65,923 - AO356_00335 0.20 -0.8 65,923 - AO356_00335 0.20 -0.3 65,974 - AO356_00335 0.23 +0.0 65,974 - AO356_00335 0.23 +1.2 66,067 + AO356_00335 0.28 -2.2 66,067 + AO356_00335 0.28 -0.1 66,068 - AO356_00335 0.28 +0.6 66,068 - AO356_00335 0.28 -0.6 66,068 - AO356_00335 0.28 +0.3 66,106 - AO356_00335 0.30 -0.2 66,157 - AO356_00335 0.33 +1.0 66,174 + AO356_00335 0.34 +0.2 66,174 + AO356_00335 0.34 +0.2 66,175 - AO356_00335 0.34 -0.9 66,227 - AO356_00335 0.36 +0.5 66,227 - AO356_00335 0.36 +0.9 66,241 + AO356_00335 0.37 +0.1 66,241 + AO356_00335 0.37 +0.3 66,384 + AO356_00335 0.45 +0.1 66,448 + AO356_00335 0.48 +0.2 66,448 + AO356_00335 0.48 +0.4 66,448 + AO356_00335 0.48 +0.7 66,448 + AO356_00335 0.48 -1.4 66,449 - AO356_00335 0.48 +0.6 66,449 - AO356_00335 0.48 +0.0 66,449 - AO356_00335 0.48 +0.6 66,523 + AO356_00335 0.52 +0.7 66,523 + AO356_00335 0.52 +0.6 66,523 + AO356_00335 0.52 -0.3 66,523 + AO356_00335 0.52 +0.3 66,523 + AO356_00335 0.52 +1.5 66,524 - AO356_00335 0.53 +1.0 66,524 - AO356_00335 0.53 +0.4 66,524 - AO356_00335 0.53 -0.1 66,568 - AO356_00335 0.55 -0.3 66,568 - AO356_00335 0.55 -0.7 66,719 - AO356_00335 0.63 +0.3 66,936 + AO356_00335 0.75 +0.0 66,936 + AO356_00335 0.75 -1.1 66,942 + AO356_00335 0.75 +0.6 66,943 - AO356_00335 0.75 -0.7 66,967 + AO356_00335 0.77 -0.3 66,967 + AO356_00335 0.77 +1.3 66,967 + AO356_00335 0.77 -0.5 66,967 + AO356_00335 0.77 +0.3 66,968 - AO356_00335 0.77 +0.2 66,971 + AO356_00335 0.77 -0.2 66,971 + AO356_00335 0.77 +0.9 66,971 + AO356_00335 0.77 -1.1 66,972 - AO356_00335 0.77 +0.6 66,972 - AO356_00335 0.77 +0.1 67,153 + AO356_00335 0.87 +0.8 67,153 + AO356_00335 0.87 -0.3 67,153 + AO356_00335 0.87 +0.2 67,181 + AO356_00335 0.88 -0.4 67,182 - AO356_00335 0.88 +0.5 67,231 + -0.0 67,231 + -2.7 67,274 - -0.1 67,345 + +0.8 67,345 + +0.3 67,346 - +1.0 67,506 + -0.2 67,507 - +0.5 67,519 + +0.3 67,564 - +0.6 67,717 + +0.2 67,718 - +0.8 68,354 - +0.5 68,375 - +0.3 68,375 - +0.9 68,375 - +0.0 68,397 - -0.4 68,397 - +0.1
Or see this region's nucleotide sequence