Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS22860

Experiment: Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS22855 and ABZR87_RS22860 are separated by 93 nucleotidesABZR87_RS22860 and ABZR87_RS22865 are separated by 227 nucleotidesABZR87_RS22865 and ABZR87_RS22870 are separated by 70 nucleotides ABZR87_RS22855: ABZR87_RS22855 - GGDEF domain-containing protein, at 1,488,174 to 1,489,346 _RS22855 ABZR87_RS22860: ABZR87_RS22860 - hypothetical protein, at 1,489,440 to 1,489,703 _RS22860 ABZR87_RS22865: ABZR87_RS22865 - hypothetical protein, at 1,489,931 to 1,490,257 _RS22865 ABZR87_RS22870: ABZR87_RS22870 - hypothetical protein, at 1,490,328 to 1,490,678 _RS22870 Position (kb) 1489 1490Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 1488.470 kb on + strand, within ABZR87_RS22855at 1488.841 kb on + strand, within ABZR87_RS22855at 1488.842 kb on - strand, within ABZR87_RS22855at 1488.907 kb on + strand, within ABZR87_RS22855at 1488.907 kb on + strand, within ABZR87_RS22855at 1488.908 kb on - strand, within ABZR87_RS22855at 1488.908 kb on - strand, within ABZR87_RS22855at 1489.021 kb on + strand, within ABZR87_RS22855at 1489.021 kb on + strand, within ABZR87_RS22855at 1489.021 kb on + strand, within ABZR87_RS22855at 1489.030 kb on + strand, within ABZR87_RS22855at 1489.030 kb on + strand, within ABZR87_RS22855at 1489.031 kb on - strand, within ABZR87_RS22855at 1489.031 kb on - strand, within ABZR87_RS22855at 1489.031 kb on - strand, within ABZR87_RS22855at 1489.031 kb on - strand, within ABZR87_RS22855at 1489.031 kb on - strand, within ABZR87_RS22855at 1489.031 kb on - strand, within ABZR87_RS22855at 1489.117 kb on + strand, within ABZR87_RS22855at 1489.117 kb on + strand, within ABZR87_RS22855at 1489.117 kb on + strand, within ABZR87_RS22855at 1489.117 kb on + strand, within ABZR87_RS22855at 1489.117 kb on + strand, within ABZR87_RS22855at 1489.120 kb on + strand, within ABZR87_RS22855at 1489.120 kb on + strand, within ABZR87_RS22855at 1489.120 kb on + strand, within ABZR87_RS22855at 1489.121 kb on - strand, within ABZR87_RS22855at 1489.296 kb on + strandat 1489.297 kb on - strandat 1489.297 kb on - strandat 1489.365 kb on + strandat 1489.380 kb on + strandat 1489.380 kb on + strandat 1489.381 kb on - strandat 1489.381 kb on - strandat 1489.381 kb on - strandat 1489.381 kb on - strandat 1489.403 kb on + strandat 1489.403 kb on + strandat 1489.403 kb on + strandat 1489.403 kb on + strandat 1489.565 kb on + strand, within ABZR87_RS22860at 1489.565 kb on + strand, within ABZR87_RS22860at 1489.674 kb on + strand, within ABZR87_RS22860at 1489.674 kb on + strand, within ABZR87_RS22860at 1489.675 kb on - strand, within ABZR87_RS22860at 1489.782 kb on + strandat 1489.782 kb on + strandat 1489.782 kb on + strandat 1489.782 kb on + strandat 1489.783 kb on - strandat 1489.783 kb on - strandat 1489.783 kb on - strandat 1489.783 kb on - strandat 1489.956 kb on - strandat 1490.073 kb on + strand, within ABZR87_RS22865at 1490.073 kb on + strand, within ABZR87_RS22865at 1490.073 kb on + strand, within ABZR87_RS22865at 1490.074 kb on - strand, within ABZR87_RS22865at 1490.074 kb on - strand, within ABZR87_RS22865at 1490.074 kb on - strand, within ABZR87_RS22865at 1490.074 kb on - strand, within ABZR87_RS22865at 1490.103 kb on + strand, within ABZR87_RS22865at 1490.104 kb on - strand, within ABZR87_RS22865at 1490.187 kb on + strand, within ABZR87_RS22865at 1490.195 kb on + strand, within ABZR87_RS22865at 1490.196 kb on + strand, within ABZR87_RS22865at 1490.196 kb on - strand, within ABZR87_RS22865at 1490.196 kb on - strand, within ABZR87_RS22865at 1490.317 kb on - strandat 1490.507 kb on - strand, within ABZR87_RS22870at 1490.509 kb on + strand, within ABZR87_RS22870at 1490.509 kb on + strand, within ABZR87_RS22870at 1490.509 kb on + strand, within ABZR87_RS22870at 1490.509 kb on + strand, within ABZR87_RS22870at 1490.509 kb on + strand, within ABZR87_RS22870at 1490.510 kb on - strand, within ABZR87_RS22870at 1490.510 kb on - strand, within ABZR87_RS22870at 1490.510 kb on - strand, within ABZR87_RS22870at 1490.510 kb on - strand, within ABZR87_RS22870at 1490.684 kb on + strandat 1490.684 kb on + strandat 1490.684 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB
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1,488,470 + ABZR87_RS22855 0.25 +0.2
1,488,841 + ABZR87_RS22855 0.57 +0.8
1,488,842 - ABZR87_RS22855 0.57 -3.2
1,488,907 + ABZR87_RS22855 0.62 -1.3
1,488,907 + ABZR87_RS22855 0.62 -0.8
1,488,908 - ABZR87_RS22855 0.63 -1.8
1,488,908 - ABZR87_RS22855 0.63 +3.5
1,489,021 + ABZR87_RS22855 0.72 +0.5
1,489,021 + ABZR87_RS22855 0.72 +0.1
1,489,021 + ABZR87_RS22855 0.72 +0.5
1,489,030 + ABZR87_RS22855 0.73 +1.3
1,489,030 + ABZR87_RS22855 0.73 -0.1
1,489,031 - ABZR87_RS22855 0.73 -0.8
1,489,031 - ABZR87_RS22855 0.73 -1.8
1,489,031 - ABZR87_RS22855 0.73 -2.3
1,489,031 - ABZR87_RS22855 0.73 +0.4
1,489,031 - ABZR87_RS22855 0.73 +0.4
1,489,031 - ABZR87_RS22855 0.73 -0.0
1,489,117 + ABZR87_RS22855 0.80 -0.9
1,489,117 + ABZR87_RS22855 0.80 +2.5
1,489,117 + ABZR87_RS22855 0.80 -1.5
1,489,117 + ABZR87_RS22855 0.80 +0.8
1,489,117 + ABZR87_RS22855 0.80 -0.4
1,489,120 + ABZR87_RS22855 0.81 +0.4
1,489,120 + ABZR87_RS22855 0.81 -2.4
1,489,120 + ABZR87_RS22855 0.81 +1.1
1,489,121 - ABZR87_RS22855 0.81 -0.1
1,489,296 + +0.6
1,489,297 - -1.4
1,489,297 - -0.2
1,489,365 + -0.2
1,489,380 + +0.1
1,489,380 + +0.8
1,489,381 - -0.2
1,489,381 - +3.0
1,489,381 - -0.1
1,489,381 - -1.8
1,489,403 + +0.3
1,489,403 + +1.3
1,489,403 + +0.2
1,489,403 + +1.1
1,489,565 + ABZR87_RS22860 0.47 -0.2
1,489,565 + ABZR87_RS22860 0.47 +0.5
1,489,674 + ABZR87_RS22860 0.89 +1.5
1,489,674 + ABZR87_RS22860 0.89 +0.4
1,489,675 - ABZR87_RS22860 0.89 +0.8
1,489,782 + -1.2
1,489,782 + +0.1
1,489,782 + -1.6
1,489,782 + +1.1
1,489,783 - -0.6
1,489,783 - +0.4
1,489,783 - -1.0
1,489,783 - +2.3
1,489,956 - +0.4
1,490,073 + ABZR87_RS22865 0.43 +0.6
1,490,073 + ABZR87_RS22865 0.43 -1.9
1,490,073 + ABZR87_RS22865 0.43 -0.2
1,490,074 - ABZR87_RS22865 0.44 -0.1
1,490,074 - ABZR87_RS22865 0.44 +2.3
1,490,074 - ABZR87_RS22865 0.44 +1.1
1,490,074 - ABZR87_RS22865 0.44 -1.8
1,490,103 + ABZR87_RS22865 0.53 -1.3
1,490,104 - ABZR87_RS22865 0.53 +1.2
1,490,187 + ABZR87_RS22865 0.78 +1.0
1,490,195 + ABZR87_RS22865 0.81 -0.5
1,490,196 + ABZR87_RS22865 0.81 -1.6
1,490,196 - ABZR87_RS22865 0.81 +1.2
1,490,196 - ABZR87_RS22865 0.81 +1.0
1,490,317 - +1.5
1,490,507 - ABZR87_RS22870 0.51 -1.0
1,490,509 + ABZR87_RS22870 0.52 -3.0
1,490,509 + ABZR87_RS22870 0.52 -1.7
1,490,509 + ABZR87_RS22870 0.52 -0.6
1,490,509 + ABZR87_RS22870 0.52 -0.4
1,490,509 + ABZR87_RS22870 0.52 -0.2
1,490,510 - ABZR87_RS22870 0.52 +2.1
1,490,510 - ABZR87_RS22870 0.52 +0.4
1,490,510 - ABZR87_RS22870 0.52 -0.2
1,490,510 - ABZR87_RS22870 0.52 -2.0
1,490,684 + -1.8
1,490,684 + +1.3
1,490,684 + -2.1

Or see this region's nucleotide sequence