Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS22745

Experiment: Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS22740 and ABZR87_RS22745 are separated by 16 nucleotidesABZR87_RS22745 and ABZR87_RS22750 are separated by 46 nucleotides ABZR87_RS22740: ABZR87_RS22740 - MFS transporter, at 1,460,657 to 1,462,018 _RS22740 ABZR87_RS22745: ABZR87_RS22745 - MBL fold metallo-hydrolase, at 1,462,035 to 1,462,928 _RS22745 ABZR87_RS22750: ABZR87_RS22750 - response regulator transcription factor, at 1,462,975 to 1,463,961 _RS22750 Position (kb) 1462 1463Strain fitness (log2 ratio) -2 -1 0 1 2 3at 1461.057 kb on + strand, within ABZR87_RS22740at 1461.143 kb on + strand, within ABZR87_RS22740at 1461.143 kb on + strand, within ABZR87_RS22740at 1461.440 kb on + strand, within ABZR87_RS22740at 1461.441 kb on - strand, within ABZR87_RS22740at 1461.465 kb on - strand, within ABZR87_RS22740at 1461.465 kb on - strand, within ABZR87_RS22740at 1461.513 kb on + strand, within ABZR87_RS22740at 1461.514 kb on - strand, within ABZR87_RS22740at 1461.551 kb on + strand, within ABZR87_RS22740at 1461.551 kb on + strand, within ABZR87_RS22740at 1461.552 kb on - strand, within ABZR87_RS22740at 1461.552 kb on - strand, within ABZR87_RS22740at 1461.552 kb on - strand, within ABZR87_RS22740at 1461.552 kb on - strand, within ABZR87_RS22740at 1461.633 kb on + strand, within ABZR87_RS22740at 1461.634 kb on - strand, within ABZR87_RS22740at 1461.725 kb on + strand, within ABZR87_RS22740at 1461.931 kb on - strandat 1461.974 kb on + strandat 1461.975 kb on - strandat 1461.975 kb on - strandat 1461.975 kb on - strandat 1461.975 kb on - strandat 1461.975 kb on - strandat 1462.383 kb on + strand, within ABZR87_RS22745at 1462.383 kb on + strand, within ABZR87_RS22745at 1462.383 kb on + strand, within ABZR87_RS22745at 1462.383 kb on + strand, within ABZR87_RS22745at 1462.384 kb on - strand, within ABZR87_RS22745at 1462.384 kb on - strand, within ABZR87_RS22745at 1462.384 kb on - strand, within ABZR87_RS22745at 1462.384 kb on - strand, within ABZR87_RS22745at 1462.384 kb on - strand, within ABZR87_RS22745at 1462.384 kb on - strand, within ABZR87_RS22745at 1462.384 kb on - strand, within ABZR87_RS22745at 1462.476 kb on + strand, within ABZR87_RS22745at 1462.476 kb on + strand, within ABZR87_RS22745at 1462.476 kb on + strand, within ABZR87_RS22745at 1462.476 kb on + strand, within ABZR87_RS22745at 1462.476 kb on + strand, within ABZR87_RS22745at 1462.476 kb on + strand, within ABZR87_RS22745at 1462.476 kb on + strand, within ABZR87_RS22745at 1462.477 kb on - strand, within ABZR87_RS22745at 1462.477 kb on - strand, within ABZR87_RS22745at 1462.477 kb on - strand, within ABZR87_RS22745at 1462.477 kb on - strand, within ABZR87_RS22745at 1462.662 kb on - strand, within ABZR87_RS22745at 1462.662 kb on - strand, within ABZR87_RS22745at 1462.662 kb on - strand, within ABZR87_RS22745at 1462.737 kb on + strand, within ABZR87_RS22745at 1462.737 kb on + strand, within ABZR87_RS22745at 1462.737 kb on + strand, within ABZR87_RS22745at 1462.908 kb on + strandat 1462.908 kb on + strandat 1462.932 kb on + strandat 1463.351 kb on - strand, within ABZR87_RS22750at 1463.848 kb on - strand, within ABZR87_RS22750

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB
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1,461,057 + ABZR87_RS22740 0.29 -1.0
1,461,143 + ABZR87_RS22740 0.36 +1.5
1,461,143 + ABZR87_RS22740 0.36 -0.9
1,461,440 + ABZR87_RS22740 0.57 -0.1
1,461,441 - ABZR87_RS22740 0.58 +0.6
1,461,465 - ABZR87_RS22740 0.59 +0.5
1,461,465 - ABZR87_RS22740 0.59 +2.0
1,461,513 + ABZR87_RS22740 0.63 -0.1
1,461,514 - ABZR87_RS22740 0.63 -0.9
1,461,551 + ABZR87_RS22740 0.66 +0.7
1,461,551 + ABZR87_RS22740 0.66 +0.3
1,461,552 - ABZR87_RS22740 0.66 +2.5
1,461,552 - ABZR87_RS22740 0.66 -0.5
1,461,552 - ABZR87_RS22740 0.66 -0.2
1,461,552 - ABZR87_RS22740 0.66 +0.7
1,461,633 + ABZR87_RS22740 0.72 -1.4
1,461,634 - ABZR87_RS22740 0.72 -1.0
1,461,725 + ABZR87_RS22740 0.78 -0.1
1,461,931 - +0.5
1,461,974 + -1.5
1,461,975 - +0.9
1,461,975 - -1.3
1,461,975 - +0.2
1,461,975 - +1.0
1,461,975 - -0.1
1,462,383 + ABZR87_RS22745 0.39 +0.3
1,462,383 + ABZR87_RS22745 0.39 -0.3
1,462,383 + ABZR87_RS22745 0.39 -0.2
1,462,383 + ABZR87_RS22745 0.39 -0.5
1,462,384 - ABZR87_RS22745 0.39 -0.6
1,462,384 - ABZR87_RS22745 0.39 -2.3
1,462,384 - ABZR87_RS22745 0.39 +1.6
1,462,384 - ABZR87_RS22745 0.39 +0.1
1,462,384 - ABZR87_RS22745 0.39 +0.1
1,462,384 - ABZR87_RS22745 0.39 -0.2
1,462,384 - ABZR87_RS22745 0.39 -1.0
1,462,476 + ABZR87_RS22745 0.49 +1.3
1,462,476 + ABZR87_RS22745 0.49 -0.1
1,462,476 + ABZR87_RS22745 0.49 -2.2
1,462,476 + ABZR87_RS22745 0.49 +1.5
1,462,476 + ABZR87_RS22745 0.49 -0.5
1,462,476 + ABZR87_RS22745 0.49 +0.5
1,462,476 + ABZR87_RS22745 0.49 +0.7
1,462,477 - ABZR87_RS22745 0.49 +1.0
1,462,477 - ABZR87_RS22745 0.49 +2.9
1,462,477 - ABZR87_RS22745 0.49 +1.0
1,462,477 - ABZR87_RS22745 0.49 +0.9
1,462,662 - ABZR87_RS22745 0.70 -1.3
1,462,662 - ABZR87_RS22745 0.70 -1.6
1,462,662 - ABZR87_RS22745 0.70 +2.5
1,462,737 + ABZR87_RS22745 0.79 -0.9
1,462,737 + ABZR87_RS22745 0.79 +0.1
1,462,737 + ABZR87_RS22745 0.79 +0.6
1,462,908 + +2.0
1,462,908 + -0.3
1,462,932 + +0.0
1,463,351 - ABZR87_RS22750 0.38 +0.5
1,463,848 - ABZR87_RS22750 0.88 +1.2

Or see this region's nucleotide sequence