Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS22220

Experiment: Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS22210 and ABZR87_RS22215 are separated by 19 nucleotidesABZR87_RS22215 and ABZR87_RS22220 are separated by 33 nucleotidesABZR87_RS22220 and ABZR87_RS22225 are separated by 85 nucleotidesABZR87_RS22225 and ABZR87_RS22230 overlap by 1 nucleotides ABZR87_RS22210: ABZR87_RS22210 - flagellar type III secretion system pore protein FliP, at 1,346,256 to 1,347,005 _RS22210 ABZR87_RS22215: ABZR87_RS22215 - flagellar biosynthesis protein FliQ, at 1,347,025 to 1,347,294 _RS22215 ABZR87_RS22220: ABZR87_RS22220 - flagellar biosynthetic protein FliR, at 1,347,328 to 1,348,122 _RS22220 ABZR87_RS22225: ABZR87_RS22225 - 3-ketoacyl-ACP reductase FabG2, at 1,348,208 to 1,348,936 _RS22225 ABZR87_RS22230: ABZR87_RS22230 - hypothetical protein, at 1,348,936 to 1,349,598 _RS22230 Position (kb) 1347 1348 1349Strain fitness (log2 ratio) -1 0 1 2 3 4 5 6 7at 1346.379 kb on + strand, within ABZR87_RS22210at 1346.379 kb on + strand, within ABZR87_RS22210at 1346.379 kb on + strand, within ABZR87_RS22210at 1346.380 kb on - strand, within ABZR87_RS22210at 1346.380 kb on - strand, within ABZR87_RS22210at 1346.592 kb on + strand, within ABZR87_RS22210at 1346.592 kb on + strand, within ABZR87_RS22210at 1346.592 kb on + strand, within ABZR87_RS22210at 1346.593 kb on - strand, within ABZR87_RS22210at 1346.604 kb on + strand, within ABZR87_RS22210at 1346.604 kb on + strand, within ABZR87_RS22210at 1346.604 kb on + strand, within ABZR87_RS22210at 1346.605 kb on - strand, within ABZR87_RS22210at 1347.037 kb on + strandat 1347.038 kb on - strandat 1347.283 kb on + strandat 1347.283 kb on + strandat 1347.284 kb on - strandat 1347.284 kb on - strandat 1347.284 kb on - strandat 1347.373 kb on + strandat 1347.373 kb on + strandat 1347.373 kb on + strandat 1347.373 kb on + strandat 1347.373 kb on + strandat 1347.373 kb on + strandat 1347.374 kb on - strandat 1347.374 kb on - strandat 1347.453 kb on + strand, within ABZR87_RS22220at 1347.453 kb on + strand, within ABZR87_RS22220at 1347.453 kb on + strand, within ABZR87_RS22220at 1347.453 kb on + strand, within ABZR87_RS22220at 1347.454 kb on - strand, within ABZR87_RS22220at 1347.532 kb on + strand, within ABZR87_RS22220at 1347.532 kb on + strand, within ABZR87_RS22220at 1347.532 kb on + strand, within ABZR87_RS22220at 1347.532 kb on + strand, within ABZR87_RS22220at 1347.532 kb on + strand, within ABZR87_RS22220at 1347.532 kb on + strand, within ABZR87_RS22220at 1347.533 kb on - strand, within ABZR87_RS22220at 1347.533 kb on - strand, within ABZR87_RS22220at 1347.533 kb on - strand, within ABZR87_RS22220at 1347.533 kb on - strand, within ABZR87_RS22220at 1348.172 kb on + strandat 1348.173 kb on - strandat 1348.265 kb on + strandat 1348.265 kb on + strandat 1348.451 kb on + strand, within ABZR87_RS22225at 1348.451 kb on + strand, within ABZR87_RS22225at 1348.452 kb on - strand, within ABZR87_RS22225at 1348.553 kb on + strand, within ABZR87_RS22225at 1348.554 kb on + strand, within ABZR87_RS22225at 1348.664 kb on + strand, within ABZR87_RS22225at 1348.664 kb on + strand, within ABZR87_RS22225at 1348.665 kb on - strand, within ABZR87_RS22225at 1348.665 kb on - strand, within ABZR87_RS22225at 1348.665 kb on - strand, within ABZR87_RS22225at 1348.665 kb on - strand, within ABZR87_RS22225at 1348.797 kb on + strand, within ABZR87_RS22225at 1348.797 kb on + strand, within ABZR87_RS22225at 1348.797 kb on + strand, within ABZR87_RS22225at 1348.797 kb on + strand, within ABZR87_RS22225at 1348.798 kb on - strand, within ABZR87_RS22225at 1348.892 kb on + strandat 1348.892 kb on + strandat 1348.892 kb on + strandat 1348.892 kb on + strandat 1348.892 kb on + strandat 1349.117 kb on - strand, within ABZR87_RS22230

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB
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1,346,379 + ABZR87_RS22210 0.16 +2.6
1,346,379 + ABZR87_RS22210 0.16 +1.5
1,346,379 + ABZR87_RS22210 0.16 +2.8
1,346,380 - ABZR87_RS22210 0.17 +3.0
1,346,380 - ABZR87_RS22210 0.17 +2.7
1,346,592 + ABZR87_RS22210 0.45 +2.8
1,346,592 + ABZR87_RS22210 0.45 +1.0
1,346,592 + ABZR87_RS22210 0.45 +2.3
1,346,593 - ABZR87_RS22210 0.45 +5.6
1,346,604 + ABZR87_RS22210 0.46 +1.6
1,346,604 + ABZR87_RS22210 0.46 +1.7
1,346,604 + ABZR87_RS22210 0.46 +1.8
1,346,605 - ABZR87_RS22210 0.47 -0.3
1,347,037 + +2.4
1,347,038 - +1.5
1,347,283 + -0.2
1,347,283 + +3.1
1,347,284 - +2.1
1,347,284 - +1.7
1,347,284 - +1.2
1,347,373 + +2.2
1,347,373 + +2.4
1,347,373 + +5.8
1,347,373 + +1.1
1,347,373 + +2.4
1,347,373 + +3.6
1,347,374 - +3.6
1,347,374 - +0.7
1,347,453 + ABZR87_RS22220 0.16 +4.1
1,347,453 + ABZR87_RS22220 0.16 +2.3
1,347,453 + ABZR87_RS22220 0.16 +2.3
1,347,453 + ABZR87_RS22220 0.16 +1.3
1,347,454 - ABZR87_RS22220 0.16 +1.0
1,347,532 + ABZR87_RS22220 0.26 +3.7
1,347,532 + ABZR87_RS22220 0.26 +1.3
1,347,532 + ABZR87_RS22220 0.26 +2.9
1,347,532 + ABZR87_RS22220 0.26 +2.8
1,347,532 + ABZR87_RS22220 0.26 +1.0
1,347,532 + ABZR87_RS22220 0.26 +1.5
1,347,533 - ABZR87_RS22220 0.26 +1.7
1,347,533 - ABZR87_RS22220 0.26 +2.7
1,347,533 - ABZR87_RS22220 0.26 +4.4
1,347,533 - ABZR87_RS22220 0.26 +2.5
1,348,172 + +0.9
1,348,173 - +1.4
1,348,265 + -1.0
1,348,265 + +0.7
1,348,451 + ABZR87_RS22225 0.33 -0.9
1,348,451 + ABZR87_RS22225 0.33 +0.1
1,348,452 - ABZR87_RS22225 0.33 -0.4
1,348,553 + ABZR87_RS22225 0.47 +0.6
1,348,554 + ABZR87_RS22225 0.47 -0.1
1,348,664 + ABZR87_RS22225 0.63 +1.3
1,348,664 + ABZR87_RS22225 0.63 +0.7
1,348,665 - ABZR87_RS22225 0.63 -0.9
1,348,665 - ABZR87_RS22225 0.63 -0.1
1,348,665 - ABZR87_RS22225 0.63 +0.9
1,348,665 - ABZR87_RS22225 0.63 +0.0
1,348,797 + ABZR87_RS22225 0.81 -0.6
1,348,797 + ABZR87_RS22225 0.81 -1.6
1,348,797 + ABZR87_RS22225 0.81 +0.3
1,348,797 + ABZR87_RS22225 0.81 +7.5
1,348,798 - ABZR87_RS22225 0.81 +0.0
1,348,892 + +1.1
1,348,892 + +0.0
1,348,892 + +0.5
1,348,892 + -0.7
1,348,892 + -0.6
1,349,117 - ABZR87_RS22230 0.27 -0.8

Or see this region's nucleotide sequence