Experiment: Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS22205 and ABZR87_RS22210 overlap by 4 nucleotides ABZR87_RS22210 and ABZR87_RS22215 are separated by 19 nucleotides ABZR87_RS22215 and ABZR87_RS22220 are separated by 33 nucleotides ABZR87_RS22220 and ABZR87_RS22225 are separated by 85 nucleotides
ABZR87_RS22205: ABZR87_RS22205 - flagellar biosynthetic protein FliO, at 1,345,858 to 1,346,259
_RS22205
ABZR87_RS22210: ABZR87_RS22210 - flagellar type III secretion system pore protein FliP, at 1,346,256 to 1,347,005
_RS22210
ABZR87_RS22215: ABZR87_RS22215 - flagellar biosynthesis protein FliQ, at 1,347,025 to 1,347,294
_RS22215
ABZR87_RS22220: ABZR87_RS22220 - flagellar biosynthetic protein FliR, at 1,347,328 to 1,348,122
_RS22220
ABZR87_RS22225: ABZR87_RS22225 - 3-ketoacyl-ACP reductase FabG2, at 1,348,208 to 1,348,936
_RS22225
Position (kb) 1347
1348 Strain fitness (log2 ratio) -1
0
1
2
3
4
5
6 at 1346.267 kb on + strand at 1346.267 kb on + strand at 1346.267 kb on + strand at 1346.267 kb on + strand at 1346.267 kb on + strand at 1346.267 kb on + strand at 1346.268 kb on - strand at 1346.268 kb on - strand at 1346.268 kb on - strand at 1346.268 kb on - strand at 1346.379 kb on + strand, within ABZR87_RS22210 at 1346.379 kb on + strand, within ABZR87_RS22210 at 1346.379 kb on + strand, within ABZR87_RS22210 at 1346.380 kb on - strand, within ABZR87_RS22210 at 1346.380 kb on - strand, within ABZR87_RS22210 at 1346.592 kb on + strand, within ABZR87_RS22210 at 1346.592 kb on + strand, within ABZR87_RS22210 at 1346.592 kb on + strand, within ABZR87_RS22210 at 1346.593 kb on - strand, within ABZR87_RS22210 at 1346.604 kb on + strand, within ABZR87_RS22210 at 1346.604 kb on + strand, within ABZR87_RS22210 at 1346.604 kb on + strand, within ABZR87_RS22210 at 1346.605 kb on - strand, within ABZR87_RS22210 at 1347.037 kb on + strand at 1347.038 kb on - strand at 1347.283 kb on + strand at 1347.283 kb on + strand at 1347.284 kb on - strand at 1347.284 kb on - strand at 1347.284 kb on - strand at 1347.373 kb on + strand at 1347.373 kb on + strand at 1347.373 kb on + strand at 1347.373 kb on + strand at 1347.373 kb on + strand at 1347.373 kb on + strand at 1347.374 kb on - strand at 1347.374 kb on - strand at 1347.453 kb on + strand, within ABZR87_RS22220 at 1347.453 kb on + strand, within ABZR87_RS22220 at 1347.453 kb on + strand, within ABZR87_RS22220 at 1347.453 kb on + strand, within ABZR87_RS22220 at 1347.454 kb on - strand, within ABZR87_RS22220 at 1347.532 kb on + strand, within ABZR87_RS22220 at 1347.532 kb on + strand, within ABZR87_RS22220 at 1347.532 kb on + strand, within ABZR87_RS22220 at 1347.532 kb on + strand, within ABZR87_RS22220 at 1347.532 kb on + strand, within ABZR87_RS22220 at 1347.532 kb on + strand, within ABZR87_RS22220 at 1347.533 kb on - strand, within ABZR87_RS22220 at 1347.533 kb on - strand, within ABZR87_RS22220 at 1347.533 kb on - strand, within ABZR87_RS22220 at 1347.533 kb on - strand, within ABZR87_RS22220 at 1348.172 kb on + strand at 1348.173 kb on - strand at 1348.265 kb on + strand at 1348.265 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB remove 1,346,267 + +2.0 1,346,267 + -1.0 1,346,267 + +1.0 1,346,267 + +2.6 1,346,267 + +1.1 1,346,267 + +1.4 1,346,268 - +3.8 1,346,268 - +2.5 1,346,268 - -0.0 1,346,268 - +2.5 1,346,379 + ABZR87_RS22210 0.16 +2.6 1,346,379 + ABZR87_RS22210 0.16 +1.5 1,346,379 + ABZR87_RS22210 0.16 +2.8 1,346,380 - ABZR87_RS22210 0.17 +3.0 1,346,380 - ABZR87_RS22210 0.17 +2.7 1,346,592 + ABZR87_RS22210 0.45 +2.8 1,346,592 + ABZR87_RS22210 0.45 +1.0 1,346,592 + ABZR87_RS22210 0.45 +2.3 1,346,593 - ABZR87_RS22210 0.45 +5.6 1,346,604 + ABZR87_RS22210 0.46 +1.6 1,346,604 + ABZR87_RS22210 0.46 +1.7 1,346,604 + ABZR87_RS22210 0.46 +1.8 1,346,605 - ABZR87_RS22210 0.47 -0.3 1,347,037 + +2.4 1,347,038 - +1.5 1,347,283 + -0.2 1,347,283 + +3.1 1,347,284 - +2.1 1,347,284 - +1.7 1,347,284 - +1.2 1,347,373 + +2.2 1,347,373 + +2.4 1,347,373 + +5.8 1,347,373 + +1.1 1,347,373 + +2.4 1,347,373 + +3.6 1,347,374 - +3.6 1,347,374 - +0.7 1,347,453 + ABZR87_RS22220 0.16 +4.1 1,347,453 + ABZR87_RS22220 0.16 +2.3 1,347,453 + ABZR87_RS22220 0.16 +2.3 1,347,453 + ABZR87_RS22220 0.16 +1.3 1,347,454 - ABZR87_RS22220 0.16 +1.0 1,347,532 + ABZR87_RS22220 0.26 +3.7 1,347,532 + ABZR87_RS22220 0.26 +1.3 1,347,532 + ABZR87_RS22220 0.26 +2.9 1,347,532 + ABZR87_RS22220 0.26 +2.8 1,347,532 + ABZR87_RS22220 0.26 +1.0 1,347,532 + ABZR87_RS22220 0.26 +1.5 1,347,533 - ABZR87_RS22220 0.26 +1.7 1,347,533 - ABZR87_RS22220 0.26 +2.7 1,347,533 - ABZR87_RS22220 0.26 +4.4 1,347,533 - ABZR87_RS22220 0.26 +2.5 1,348,172 + +0.9 1,348,173 - +1.4 1,348,265 + -1.0 1,348,265 + +0.7
Or see this region's nucleotide sequence