Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS21020

Experiment: Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS21015 and ABZR87_RS21020 are separated by 34 nucleotidesABZR87_RS21020 and ABZR87_RS21025 are separated by 48 nucleotidesABZR87_RS21025 and ABZR87_RS21030 are separated by 339 nucleotides ABZR87_RS21015: ABZR87_RS21015 - TIGR01777 family oxidoreductase, at 1,099,915 to 1,100,847 _RS21015 ABZR87_RS21020: ABZR87_RS21020 - cryptochrome/photolyase family protein, at 1,100,882 to 1,102,423 _RS21020 ABZR87_RS21025: ABZR87_RS21025 - lipocalin family protein, at 1,102,472 to 1,103,083 _RS21025 ABZR87_RS21030: ABZR87_RS21030 - chalcone isomerase family protein, at 1,103,423 to 1,103,902 _RS21030 Position (kb) 1100 1101 1102 1103Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 1099.883 kb on + strandat 1100.087 kb on - strand, within ABZR87_RS21015at 1100.218 kb on + strand, within ABZR87_RS21015at 1100.368 kb on + strand, within ABZR87_RS21015at 1100.499 kb on - strand, within ABZR87_RS21015at 1100.599 kb on + strand, within ABZR87_RS21015at 1100.599 kb on + strand, within ABZR87_RS21015at 1100.599 kb on + strand, within ABZR87_RS21015at 1100.599 kb on + strand, within ABZR87_RS21015at 1100.600 kb on - strand, within ABZR87_RS21015at 1100.600 kb on - strand, within ABZR87_RS21015at 1100.600 kb on - strand, within ABZR87_RS21015at 1100.600 kb on - strand, within ABZR87_RS21015at 1100.600 kb on - strand, within ABZR87_RS21015at 1100.600 kb on - strand, within ABZR87_RS21015at 1100.751 kb on + strand, within ABZR87_RS21015at 1100.752 kb on - strand, within ABZR87_RS21015at 1100.864 kb on + strandat 1100.864 kb on + strandat 1100.865 kb on - strandat 1100.885 kb on + strandat 1100.886 kb on - strandat 1101.033 kb on + strandat 1101.033 kb on + strandat 1101.045 kb on + strand, within ABZR87_RS21020at 1101.045 kb on + strand, within ABZR87_RS21020at 1101.045 kb on + strand, within ABZR87_RS21020at 1101.046 kb on - strand, within ABZR87_RS21020at 1101.046 kb on - strand, within ABZR87_RS21020at 1101.046 kb on - strand, within ABZR87_RS21020at 1101.046 kb on - strand, within ABZR87_RS21020at 1101.102 kb on + strand, within ABZR87_RS21020at 1101.103 kb on - strand, within ABZR87_RS21020at 1101.123 kb on + strand, within ABZR87_RS21020at 1101.141 kb on + strand, within ABZR87_RS21020at 1101.141 kb on + strand, within ABZR87_RS21020at 1101.141 kb on + strand, within ABZR87_RS21020at 1101.141 kb on + strand, within ABZR87_RS21020at 1101.141 kb on + strand, within ABZR87_RS21020at 1101.142 kb on - strand, within ABZR87_RS21020at 1101.142 kb on - strand, within ABZR87_RS21020at 1101.194 kb on - strand, within ABZR87_RS21020at 1101.194 kb on - strand, within ABZR87_RS21020at 1101.459 kb on + strand, within ABZR87_RS21020at 1101.460 kb on - strand, within ABZR87_RS21020at 1101.470 kb on + strand, within ABZR87_RS21020at 1101.471 kb on - strand, within ABZR87_RS21020at 1101.471 kb on - strand, within ABZR87_RS21020at 1101.471 kb on - strand, within ABZR87_RS21020at 1101.474 kb on + strand, within ABZR87_RS21020at 1101.474 kb on + strand, within ABZR87_RS21020at 1101.474 kb on + strand, within ABZR87_RS21020at 1101.475 kb on - strand, within ABZR87_RS21020at 1101.544 kb on - strand, within ABZR87_RS21020at 1101.952 kb on - strand, within ABZR87_RS21020at 1102.135 kb on - strand, within ABZR87_RS21020at 1102.203 kb on + strand, within ABZR87_RS21020at 1102.203 kb on + strand, within ABZR87_RS21020at 1102.204 kb on - strand, within ABZR87_RS21020at 1102.204 kb on - strand, within ABZR87_RS21020at 1102.204 kb on - strand, within ABZR87_RS21020at 1102.204 kb on - strand, within ABZR87_RS21020at 1102.297 kb on - strandat 1102.297 kb on - strandat 1102.297 kb on - strandat 1102.297 kb on - strandat 1102.297 kb on - strandat 1102.297 kb on - strandat 1102.460 kb on + strandat 1102.460 kb on + strandat 1102.460 kb on + strandat 1102.460 kb on + strandat 1102.461 kb on - strandat 1102.461 kb on - strandat 1102.473 kb on + strandat 1102.473 kb on + strandat 1102.608 kb on + strand, within ABZR87_RS21025at 1102.609 kb on - strand, within ABZR87_RS21025at 1102.681 kb on - strand, within ABZR87_RS21025at 1102.767 kb on - strand, within ABZR87_RS21025at 1102.827 kb on + strand, within ABZR87_RS21025at 1102.828 kb on - strand, within ABZR87_RS21025at 1102.839 kb on - strand, within ABZR87_RS21025at 1102.887 kb on + strand, within ABZR87_RS21025at 1102.887 kb on + strand, within ABZR87_RS21025at 1102.888 kb on - strand, within ABZR87_RS21025at 1102.903 kb on - strand, within ABZR87_RS21025at 1102.903 kb on - strand, within ABZR87_RS21025at 1102.924 kb on + strand, within ABZR87_RS21025at 1102.925 kb on - strand, within ABZR87_RS21025at 1103.096 kb on + strandat 1103.096 kb on + strandat 1103.096 kb on + strandat 1103.096 kb on + strandat 1103.214 kb on + strandat 1103.215 kb on - strandat 1103.245 kb on + strandat 1103.314 kb on - strandat 1103.314 kb on - strandat 1103.365 kb on + strandat 1103.365 kb on + strandat 1103.365 kb on + strandat 1103.366 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB
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1,099,883 + -3.1
1,100,087 - ABZR87_RS21015 0.18 -0.7
1,100,218 + ABZR87_RS21015 0.32 -2.7
1,100,368 + ABZR87_RS21015 0.49 +0.4
1,100,499 - ABZR87_RS21015 0.63 +0.4
1,100,599 + ABZR87_RS21015 0.73 -0.5
1,100,599 + ABZR87_RS21015 0.73 +0.1
1,100,599 + ABZR87_RS21015 0.73 -0.2
1,100,599 + ABZR87_RS21015 0.73 -0.5
1,100,600 - ABZR87_RS21015 0.73 -2.1
1,100,600 - ABZR87_RS21015 0.73 -2.0
1,100,600 - ABZR87_RS21015 0.73 -1.6
1,100,600 - ABZR87_RS21015 0.73 -0.1
1,100,600 - ABZR87_RS21015 0.73 -0.6
1,100,600 - ABZR87_RS21015 0.73 -0.1
1,100,751 + ABZR87_RS21015 0.90 +0.1
1,100,752 - ABZR87_RS21015 0.90 -0.2
1,100,864 + +0.2
1,100,864 + +1.6
1,100,865 - -1.6
1,100,885 + +2.0
1,100,886 - +1.5
1,101,033 + +3.2
1,101,033 + -0.8
1,101,045 + ABZR87_RS21020 0.11 +2.6
1,101,045 + ABZR87_RS21020 0.11 -0.2
1,101,045 + ABZR87_RS21020 0.11 +0.5
1,101,046 - ABZR87_RS21020 0.11 +0.9
1,101,046 - ABZR87_RS21020 0.11 +0.7
1,101,046 - ABZR87_RS21020 0.11 -0.2
1,101,046 - ABZR87_RS21020 0.11 +3.2
1,101,102 + ABZR87_RS21020 0.14 +1.0
1,101,103 - ABZR87_RS21020 0.14 +0.1
1,101,123 + ABZR87_RS21020 0.16 -0.3
1,101,141 + ABZR87_RS21020 0.17 -0.9
1,101,141 + ABZR87_RS21020 0.17 +1.8
1,101,141 + ABZR87_RS21020 0.17 +0.8
1,101,141 + ABZR87_RS21020 0.17 +1.1
1,101,141 + ABZR87_RS21020 0.17 -0.4
1,101,142 - ABZR87_RS21020 0.17 +0.1
1,101,142 - ABZR87_RS21020 0.17 +0.7
1,101,194 - ABZR87_RS21020 0.20 -1.2
1,101,194 - ABZR87_RS21020 0.20 +1.5
1,101,459 + ABZR87_RS21020 0.37 -0.2
1,101,460 - ABZR87_RS21020 0.37 +0.2
1,101,470 + ABZR87_RS21020 0.38 -2.0
1,101,471 - ABZR87_RS21020 0.38 +1.2
1,101,471 - ABZR87_RS21020 0.38 -1.1
1,101,471 - ABZR87_RS21020 0.38 -0.2
1,101,474 + ABZR87_RS21020 0.38 +0.7
1,101,474 + ABZR87_RS21020 0.38 +0.5
1,101,474 + ABZR87_RS21020 0.38 +0.1
1,101,475 - ABZR87_RS21020 0.38 -1.1
1,101,544 - ABZR87_RS21020 0.43 +0.8
1,101,952 - ABZR87_RS21020 0.69 +0.4
1,102,135 - ABZR87_RS21020 0.81 +0.8
1,102,203 + ABZR87_RS21020 0.86 -1.6
1,102,203 + ABZR87_RS21020 0.86 +0.1
1,102,204 - ABZR87_RS21020 0.86 -0.4
1,102,204 - ABZR87_RS21020 0.86 -0.2
1,102,204 - ABZR87_RS21020 0.86 +0.2
1,102,204 - ABZR87_RS21020 0.86 -2.2
1,102,297 - +0.8
1,102,297 - -0.0
1,102,297 - +0.3
1,102,297 - -0.5
1,102,297 - -0.0
1,102,297 - +0.4
1,102,460 + +2.4
1,102,460 + -0.3
1,102,460 + -0.5
1,102,460 + -0.4
1,102,461 - +1.6
1,102,461 - +0.6
1,102,473 + +0.5
1,102,473 + -1.3
1,102,608 + ABZR87_RS21025 0.22 +3.2
1,102,609 - ABZR87_RS21025 0.22 +1.2
1,102,681 - ABZR87_RS21025 0.34 +1.4
1,102,767 - ABZR87_RS21025 0.48 +0.1
1,102,827 + ABZR87_RS21025 0.58 -2.0
1,102,828 - ABZR87_RS21025 0.58 -0.1
1,102,839 - ABZR87_RS21025 0.60 +1.6
1,102,887 + ABZR87_RS21025 0.68 +0.4
1,102,887 + ABZR87_RS21025 0.68 -0.3
1,102,888 - ABZR87_RS21025 0.68 +0.1
1,102,903 - ABZR87_RS21025 0.70 +0.8
1,102,903 - ABZR87_RS21025 0.70 -1.3
1,102,924 + ABZR87_RS21025 0.74 +0.9
1,102,925 - ABZR87_RS21025 0.74 +0.1
1,103,096 + +1.2
1,103,096 + -0.5
1,103,096 + -1.8
1,103,096 + -1.0
1,103,214 + +0.0
1,103,215 - +0.5
1,103,245 + +0.2
1,103,314 - +1.4
1,103,314 - +0.8
1,103,365 + +1.6
1,103,365 + -0.0
1,103,365 + +0.5
1,103,366 - -0.5

Or see this region's nucleotide sequence