Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS20000

Experiment: Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS19990 and ABZR87_RS19995 are separated by 17 nucleotidesABZR87_RS19995 and ABZR87_RS20000 are separated by 235 nucleotidesABZR87_RS20000 and ABZR87_RS20005 are separated by 37 nucleotidesABZR87_RS20005 and ABZR87_RS20010 are separated by 25 nucleotides ABZR87_RS19990: ABZR87_RS19990 - MBL fold metallo-hydrolase, at 862,660 to 864,024 _RS19990 ABZR87_RS19995: ABZR87_RS19995 - Hsp20/alpha crystallin family protein, at 864,042 to 864,464 _RS19995 ABZR87_RS20000: ABZR87_RS20000 - bifunctional aminoglycoside phosphotransferase/ATP-binding protein, at 864,700 to 866,247 _RS20000 ABZR87_RS20005: ABZR87_RS20005 - hypothetical protein, at 866,285 to 866,926 _RS20005 ABZR87_RS20010: ABZR87_RS20010 - DeoR family transcriptional regulator, at 866,952 to 867,635 _RS20010 Position (kb) 864 865 866 867Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 863.700 kb on - strand, within ABZR87_RS19990at 863.700 kb on - strand, within ABZR87_RS19990at 863.778 kb on - strand, within ABZR87_RS19990at 863.778 kb on - strand, within ABZR87_RS19990at 863.778 kb on - strand, within ABZR87_RS19990at 863.835 kb on + strand, within ABZR87_RS19990at 863.851 kb on + strand, within ABZR87_RS19990at 863.851 kb on + strand, within ABZR87_RS19990at 863.852 kb on - strand, within ABZR87_RS19990at 863.852 kb on - strand, within ABZR87_RS19990at 863.919 kb on - strandat 863.919 kb on - strandat 863.919 kb on - strandat 863.975 kb on + strandat 863.975 kb on + strandat 863.976 kb on - strandat 863.976 kb on - strandat 863.976 kb on - strandat 864.115 kb on + strand, within ABZR87_RS19995at 864.115 kb on + strand, within ABZR87_RS19995at 864.115 kb on + strand, within ABZR87_RS19995at 864.115 kb on + strand, within ABZR87_RS19995at 864.184 kb on + strand, within ABZR87_RS19995at 864.325 kb on + strand, within ABZR87_RS19995at 864.326 kb on - strand, within ABZR87_RS19995at 864.445 kb on + strandat 864.446 kb on - strandat 864.446 kb on - strandat 864.446 kb on - strandat 864.493 kb on - strandat 864.493 kb on - strandat 864.634 kb on + strandat 864.634 kb on + strandat 864.635 kb on - strandat 864.665 kb on + strandat 864.666 kb on - strandat 864.666 kb on - strandat 864.699 kb on + strandat 864.700 kb on - strandat 864.717 kb on + strandat 864.718 kb on - strandat 864.718 kb on - strandat 864.718 kb on - strandat 864.853 kb on + strandat 864.853 kb on + strandat 864.853 kb on + strandat 864.854 kb on - strandat 864.965 kb on + strand, within ABZR87_RS20000at 864.965 kb on + strand, within ABZR87_RS20000at 864.966 kb on - strand, within ABZR87_RS20000at 864.966 kb on - strand, within ABZR87_RS20000at 864.966 kb on - strand, within ABZR87_RS20000at 864.967 kb on + strand, within ABZR87_RS20000at 864.967 kb on + strand, within ABZR87_RS20000at 864.967 kb on + strand, within ABZR87_RS20000at 864.967 kb on + strand, within ABZR87_RS20000at 864.967 kb on + strand, within ABZR87_RS20000at 864.967 kb on + strand, within ABZR87_RS20000at 864.967 kb on + strand, within ABZR87_RS20000at 864.968 kb on - strand, within ABZR87_RS20000at 864.968 kb on - strand, within ABZR87_RS20000at 864.968 kb on - strand, within ABZR87_RS20000at 864.968 kb on - strand, within ABZR87_RS20000at 864.968 kb on - strand, within ABZR87_RS20000at 865.045 kb on + strand, within ABZR87_RS20000at 865.045 kb on + strand, within ABZR87_RS20000at 865.082 kb on + strand, within ABZR87_RS20000at 865.082 kb on + strand, within ABZR87_RS20000at 865.083 kb on - strand, within ABZR87_RS20000at 865.083 kb on - strand, within ABZR87_RS20000at 865.083 kb on - strand, within ABZR87_RS20000at 865.083 kb on - strand, within ABZR87_RS20000at 865.083 kb on - strand, within ABZR87_RS20000at 865.083 kb on - strand, within ABZR87_RS20000at 865.289 kb on + strand, within ABZR87_RS20000at 865.471 kb on + strand, within ABZR87_RS20000at 865.471 kb on + strand, within ABZR87_RS20000at 865.471 kb on + strand, within ABZR87_RS20000at 865.471 kb on + strand, within ABZR87_RS20000at 865.471 kb on + strand, within ABZR87_RS20000at 865.471 kb on + strand, within ABZR87_RS20000at 865.471 kb on + strand, within ABZR87_RS20000at 865.471 kb on + strand, within ABZR87_RS20000at 865.471 kb on + strand, within ABZR87_RS20000at 865.471 kb on + strand, within ABZR87_RS20000at 865.472 kb on - strand, within ABZR87_RS20000at 865.472 kb on - strand, within ABZR87_RS20000at 865.472 kb on - strand, within ABZR87_RS20000at 865.472 kb on - strand, within ABZR87_RS20000at 865.496 kb on - strand, within ABZR87_RS20000at 865.529 kb on - strand, within ABZR87_RS20000at 865.546 kb on + strand, within ABZR87_RS20000at 865.546 kb on + strand, within ABZR87_RS20000at 865.547 kb on - strand, within ABZR87_RS20000at 865.594 kb on + strand, within ABZR87_RS20000at 865.595 kb on - strand, within ABZR87_RS20000at 865.595 kb on - strand, within ABZR87_RS20000at 865.595 kb on - strand, within ABZR87_RS20000at 865.883 kb on - strand, within ABZR87_RS20000at 865.905 kb on + strand, within ABZR87_RS20000at 865.905 kb on + strand, within ABZR87_RS20000at 865.905 kb on + strand, within ABZR87_RS20000at 865.905 kb on + strand, within ABZR87_RS20000at 865.905 kb on + strand, within ABZR87_RS20000at 865.906 kb on - strand, within ABZR87_RS20000at 865.906 kb on - strand, within ABZR87_RS20000at 865.906 kb on - strand, within ABZR87_RS20000at 865.909 kb on + strand, within ABZR87_RS20000at 865.909 kb on + strand, within ABZR87_RS20000at 865.910 kb on - strand, within ABZR87_RS20000at 865.910 kb on - strand, within ABZR87_RS20000at 866.040 kb on - strand, within ABZR87_RS20000at 866.146 kb on - strandat 866.245 kb on + strandat 866.245 kb on + strandat 866.277 kb on + strandat 866.277 kb on + strandat 866.277 kb on + strandat 866.277 kb on + strandat 866.277 kb on + strandat 866.277 kb on + strandat 866.277 kb on + strandat 866.277 kb on + strandat 866.277 kb on + strandat 866.278 kb on - strandat 866.278 kb on - strandat 866.278 kb on - strandat 866.278 kb on - strandat 866.278 kb on - strandat 866.341 kb on + strandat 866.341 kb on + strandat 866.341 kb on + strandat 866.342 kb on - strandat 866.342 kb on - strandat 866.342 kb on - strandat 866.342 kb on - strandat 866.351 kb on + strand, within ABZR87_RS20005at 866.351 kb on + strand, within ABZR87_RS20005at 866.352 kb on - strand, within ABZR87_RS20005at 866.352 kb on - strand, within ABZR87_RS20005at 866.352 kb on - strand, within ABZR87_RS20005at 866.368 kb on + strand, within ABZR87_RS20005at 866.368 kb on + strand, within ABZR87_RS20005at 866.368 kb on + strand, within ABZR87_RS20005at 866.369 kb on - strand, within ABZR87_RS20005at 866.455 kb on + strand, within ABZR87_RS20005at 866.455 kb on + strand, within ABZR87_RS20005at 866.456 kb on - strand, within ABZR87_RS20005at 866.456 kb on - strand, within ABZR87_RS20005at 866.456 kb on - strand, within ABZR87_RS20005at 866.628 kb on + strand, within ABZR87_RS20005at 866.629 kb on - strand, within ABZR87_RS20005at 866.705 kb on - strand, within ABZR87_RS20005at 866.726 kb on + strand, within ABZR87_RS20005at 866.727 kb on - strand, within ABZR87_RS20005at 866.727 kb on - strand, within ABZR87_RS20005at 866.727 kb on - strand, within ABZR87_RS20005at 866.727 kb on - strand, within ABZR87_RS20005at 866.727 kb on - strand, within ABZR87_RS20005at 866.938 kb on - strandat 866.938 kb on - strandat 867.099 kb on + strand, within ABZR87_RS20010at 867.100 kb on - strand, within ABZR87_RS20010at 867.100 kb on - strand, within ABZR87_RS20010at 867.221 kb on + strand, within ABZR87_RS20010at 867.222 kb on - strand, within ABZR87_RS20010at 867.222 kb on - strand, within ABZR87_RS20010at 867.222 kb on - strand, within ABZR87_RS20010at 867.222 kb on - strand, within ABZR87_RS20010

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB
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863,700 - ABZR87_RS19990 0.76 -0.9
863,700 - ABZR87_RS19990 0.76 -0.3
863,778 - ABZR87_RS19990 0.82 -0.1
863,778 - ABZR87_RS19990 0.82 -1.2
863,778 - ABZR87_RS19990 0.82 +1.2
863,835 + ABZR87_RS19990 0.86 -1.3
863,851 + ABZR87_RS19990 0.87 +0.6
863,851 + ABZR87_RS19990 0.87 +1.7
863,852 - ABZR87_RS19990 0.87 -0.1
863,852 - ABZR87_RS19990 0.87 -0.7
863,919 - -0.6
863,919 - -1.4
863,919 - -2.2
863,975 + -1.0
863,975 + +1.4
863,976 - -1.0
863,976 - +2.1
863,976 - -0.8
864,115 + ABZR87_RS19995 0.17 -2.1
864,115 + ABZR87_RS19995 0.17 -1.0
864,115 + ABZR87_RS19995 0.17 -1.7
864,115 + ABZR87_RS19995 0.17 +1.6
864,184 + ABZR87_RS19995 0.34 -2.7
864,325 + ABZR87_RS19995 0.67 +1.5
864,326 - ABZR87_RS19995 0.67 +4.3
864,445 + -0.4
864,446 - -0.6
864,446 - -2.7
864,446 - -0.5
864,493 - +2.9
864,493 - -1.2
864,634 + +0.7
864,634 + +0.2
864,635 - +1.6
864,665 + +0.8
864,666 - +0.8
864,666 - -1.1
864,699 + +3.5
864,700 - -0.3
864,717 + -0.2
864,718 - +0.9
864,718 - +0.9
864,718 - +1.1
864,853 + +0.3
864,853 + +0.4
864,853 + +1.6
864,854 - -1.3
864,965 + ABZR87_RS20000 0.17 -0.1
864,965 + ABZR87_RS20000 0.17 -0.4
864,966 - ABZR87_RS20000 0.17 +1.7
864,966 - ABZR87_RS20000 0.17 -0.9
864,966 - ABZR87_RS20000 0.17 +1.4
864,967 + ABZR87_RS20000 0.17 -1.0
864,967 + ABZR87_RS20000 0.17 +2.1
864,967 + ABZR87_RS20000 0.17 +1.2
864,967 + ABZR87_RS20000 0.17 -0.8
864,967 + ABZR87_RS20000 0.17 +1.8
864,967 + ABZR87_RS20000 0.17 -2.0
864,967 + ABZR87_RS20000 0.17 -1.7
864,968 - ABZR87_RS20000 0.17 +1.4
864,968 - ABZR87_RS20000 0.17 +0.4
864,968 - ABZR87_RS20000 0.17 +0.4
864,968 - ABZR87_RS20000 0.17 +1.6
864,968 - ABZR87_RS20000 0.17 +0.3
865,045 + ABZR87_RS20000 0.22 -1.4
865,045 + ABZR87_RS20000 0.22 -1.2
865,082 + ABZR87_RS20000 0.25 -1.3
865,082 + ABZR87_RS20000 0.25 +1.2
865,083 - ABZR87_RS20000 0.25 -0.7
865,083 - ABZR87_RS20000 0.25 -1.0
865,083 - ABZR87_RS20000 0.25 -0.2
865,083 - ABZR87_RS20000 0.25 -0.3
865,083 - ABZR87_RS20000 0.25 +0.4
865,083 - ABZR87_RS20000 0.25 +0.2
865,289 + ABZR87_RS20000 0.38 +1.1
865,471 + ABZR87_RS20000 0.50 -2.4
865,471 + ABZR87_RS20000 0.50 -2.4
865,471 + ABZR87_RS20000 0.50 -1.7
865,471 + ABZR87_RS20000 0.50 +0.3
865,471 + ABZR87_RS20000 0.50 -1.7
865,471 + ABZR87_RS20000 0.50 +0.8
865,471 + ABZR87_RS20000 0.50 -0.3
865,471 + ABZR87_RS20000 0.50 +2.0
865,471 + ABZR87_RS20000 0.50 +3.1
865,471 + ABZR87_RS20000 0.50 +2.4
865,472 - ABZR87_RS20000 0.50 -0.6
865,472 - ABZR87_RS20000 0.50 -1.7
865,472 - ABZR87_RS20000 0.50 -1.8
865,472 - ABZR87_RS20000 0.50 -0.1
865,496 - ABZR87_RS20000 0.51 -0.8
865,529 - ABZR87_RS20000 0.54 +0.1
865,546 + ABZR87_RS20000 0.55 +1.0
865,546 + ABZR87_RS20000 0.55 +0.3
865,547 - ABZR87_RS20000 0.55 -0.5
865,594 + ABZR87_RS20000 0.58 -0.5
865,595 - ABZR87_RS20000 0.58 +0.6
865,595 - ABZR87_RS20000 0.58 -0.5
865,595 - ABZR87_RS20000 0.58 +0.3
865,883 - ABZR87_RS20000 0.76 -1.8
865,905 + ABZR87_RS20000 0.78 -1.1
865,905 + ABZR87_RS20000 0.78 +2.5
865,905 + ABZR87_RS20000 0.78 +0.5
865,905 + ABZR87_RS20000 0.78 -1.3
865,905 + ABZR87_RS20000 0.78 -1.9
865,906 - ABZR87_RS20000 0.78 +0.2
865,906 - ABZR87_RS20000 0.78 +0.3
865,906 - ABZR87_RS20000 0.78 -1.2
865,909 + ABZR87_RS20000 0.78 +0.0
865,909 + ABZR87_RS20000 0.78 +1.0
865,910 - ABZR87_RS20000 0.78 -0.4
865,910 - ABZR87_RS20000 0.78 +1.5
866,040 - ABZR87_RS20000 0.87 -0.9
866,146 - +0.1
866,245 + +0.3
866,245 + -2.4
866,277 + -1.0
866,277 + -0.9
866,277 + -1.3
866,277 + +1.0
866,277 + -1.5
866,277 + -0.2
866,277 + -0.4
866,277 + +2.2
866,277 + -0.8
866,278 - -0.4
866,278 - -1.2
866,278 - -2.1
866,278 - +1.1
866,278 - +2.0
866,341 + -1.2
866,341 + +0.3
866,341 + +0.1
866,342 - -0.6
866,342 - -0.0
866,342 - +2.1
866,342 - -2.4
866,351 + ABZR87_RS20005 0.10 +0.9
866,351 + ABZR87_RS20005 0.10 -2.0
866,352 - ABZR87_RS20005 0.10 +0.0
866,352 - ABZR87_RS20005 0.10 -2.0
866,352 - ABZR87_RS20005 0.10 -1.3
866,368 + ABZR87_RS20005 0.13 +0.3
866,368 + ABZR87_RS20005 0.13 +0.2
866,368 + ABZR87_RS20005 0.13 +0.4
866,369 - ABZR87_RS20005 0.13 -0.2
866,455 + ABZR87_RS20005 0.26 +1.3
866,455 + ABZR87_RS20005 0.26 +1.0
866,456 - ABZR87_RS20005 0.27 +1.0
866,456 - ABZR87_RS20005 0.27 +1.2
866,456 - ABZR87_RS20005 0.27 +0.3
866,628 + ABZR87_RS20005 0.53 -0.6
866,629 - ABZR87_RS20005 0.54 +0.1
866,705 - ABZR87_RS20005 0.65 +0.5
866,726 + ABZR87_RS20005 0.69 -0.8
866,727 - ABZR87_RS20005 0.69 -1.9
866,727 - ABZR87_RS20005 0.69 +1.9
866,727 - ABZR87_RS20005 0.69 +0.4
866,727 - ABZR87_RS20005 0.69 -2.5
866,727 - ABZR87_RS20005 0.69 -3.1
866,938 - -0.4
866,938 - +0.1
867,099 + ABZR87_RS20010 0.21 -0.8
867,100 - ABZR87_RS20010 0.22 +4.4
867,100 - ABZR87_RS20010 0.22 -1.0
867,221 + ABZR87_RS20010 0.39 -2.5
867,222 - ABZR87_RS20010 0.39 -0.7
867,222 - ABZR87_RS20010 0.39 +0.8
867,222 - ABZR87_RS20010 0.39 +0.4
867,222 - ABZR87_RS20010 0.39 +2.1

Or see this region's nucleotide sequence