Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS19895

Experiment: Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS19890 and ABZR87_RS19895 overlap by 37 nucleotidesABZR87_RS19895 and ABZR87_RS19900 are separated by 12 nucleotides ABZR87_RS19890: ABZR87_RS19890 - efflux RND transporter periplasmic adaptor subunit, at 837,841 to 838,914 _RS19890 ABZR87_RS19895: ABZR87_RS19895 - ribosome-associated ATPase/putative transporter RbbA, at 838,878 to 841,694 _RS19895 ABZR87_RS19900: ABZR87_RS19900 - ABC transporter permease, at 841,707 to 842,858 _RS19900 Position (kb) 838 839 840 841 842Strain fitness (log2 ratio) -2 -1 0 1 2 3 4 5at 838.388 kb on + strand, within ABZR87_RS19890at 838.388 kb on + strand, within ABZR87_RS19890at 838.389 kb on - strand, within ABZR87_RS19890at 838.401 kb on + strand, within ABZR87_RS19890at 838.401 kb on + strand, within ABZR87_RS19890at 838.402 kb on - strand, within ABZR87_RS19890at 838.452 kb on - strand, within ABZR87_RS19890at 838.452 kb on - strand, within ABZR87_RS19890at 838.591 kb on + strand, within ABZR87_RS19890at 838.591 kb on + strand, within ABZR87_RS19890at 838.591 kb on + strand, within ABZR87_RS19890at 838.592 kb on - strand, within ABZR87_RS19890at 838.592 kb on - strand, within ABZR87_RS19890at 838.678 kb on + strand, within ABZR87_RS19890at 838.678 kb on + strand, within ABZR87_RS19890at 838.678 kb on + strand, within ABZR87_RS19890at 838.678 kb on + strand, within ABZR87_RS19890at 838.678 kb on + strand, within ABZR87_RS19890at 838.679 kb on - strand, within ABZR87_RS19890at 838.679 kb on - strand, within ABZR87_RS19890at 838.679 kb on - strand, within ABZR87_RS19890at 838.679 kb on - strand, within ABZR87_RS19890at 838.679 kb on - strand, within ABZR87_RS19890at 838.679 kb on - strand, within ABZR87_RS19890at 839.202 kb on + strand, within ABZR87_RS19895at 839.202 kb on + strand, within ABZR87_RS19895at 839.203 kb on - strand, within ABZR87_RS19895at 839.203 kb on - strand, within ABZR87_RS19895at 839.203 kb on - strand, within ABZR87_RS19895at 839.232 kb on + strand, within ABZR87_RS19895at 839.232 kb on + strand, within ABZR87_RS19895at 839.233 kb on - strand, within ABZR87_RS19895at 839.508 kb on - strand, within ABZR87_RS19895at 839.508 kb on - strand, within ABZR87_RS19895at 839.553 kb on + strand, within ABZR87_RS19895at 839.554 kb on - strand, within ABZR87_RS19895at 839.991 kb on + strand, within ABZR87_RS19895at 839.991 kb on + strand, within ABZR87_RS19895at 839.992 kb on - strand, within ABZR87_RS19895at 839.992 kb on - strand, within ABZR87_RS19895at 840.015 kb on + strand, within ABZR87_RS19895at 840.015 kb on + strand, within ABZR87_RS19895at 840.015 kb on + strand, within ABZR87_RS19895at 840.016 kb on - strand, within ABZR87_RS19895at 840.016 kb on - strand, within ABZR87_RS19895at 840.462 kb on + strand, within ABZR87_RS19895at 840.597 kb on + strand, within ABZR87_RS19895at 840.597 kb on + strand, within ABZR87_RS19895at 840.597 kb on + strand, within ABZR87_RS19895at 840.598 kb on - strand, within ABZR87_RS19895at 840.723 kb on + strand, within ABZR87_RS19895at 840.724 kb on - strand, within ABZR87_RS19895at 840.724 kb on - strand, within ABZR87_RS19895at 840.724 kb on - strand, within ABZR87_RS19895at 840.724 kb on - strand, within ABZR87_RS19895at 840.724 kb on - strand, within ABZR87_RS19895at 840.765 kb on + strand, within ABZR87_RS19895at 840.765 kb on + strand, within ABZR87_RS19895at 840.765 kb on + strand, within ABZR87_RS19895at 840.765 kb on + strand, within ABZR87_RS19895at 840.765 kb on + strand, within ABZR87_RS19895at 840.766 kb on - strand, within ABZR87_RS19895at 840.793 kb on - strand, within ABZR87_RS19895at 840.822 kb on + strand, within ABZR87_RS19895at 840.822 kb on + strand, within ABZR87_RS19895at 840.978 kb on + strand, within ABZR87_RS19895at 840.979 kb on - strand, within ABZR87_RS19895at 841.071 kb on + strand, within ABZR87_RS19895at 841.077 kb on + strand, within ABZR87_RS19895at 841.077 kb on + strand, within ABZR87_RS19895at 841.078 kb on - strand, within ABZR87_RS19895at 841.078 kb on - strand, within ABZR87_RS19895at 841.078 kb on - strand, within ABZR87_RS19895at 841.078 kb on - strand, within ABZR87_RS19895at 841.080 kb on - strand, within ABZR87_RS19895at 841.260 kb on + strand, within ABZR87_RS19895at 841.260 kb on + strand, within ABZR87_RS19895at 841.260 kb on + strand, within ABZR87_RS19895at 841.366 kb on + strand, within ABZR87_RS19895at 841.366 kb on + strand, within ABZR87_RS19895at 841.543 kb on - strandat 841.692 kb on + strandat 841.693 kb on - strandat 841.693 kb on - strandat 841.821 kb on + strandat 841.821 kb on + strandat 841.822 kb on - strandat 841.822 kb on - strandat 841.842 kb on + strand, within ABZR87_RS19900at 841.842 kb on + strand, within ABZR87_RS19900at 841.843 kb on - strand, within ABZR87_RS19900at 841.843 kb on - strand, within ABZR87_RS19900at 841.944 kb on + strand, within ABZR87_RS19900at 841.944 kb on + strand, within ABZR87_RS19900at 841.945 kb on - strand, within ABZR87_RS19900at 842.093 kb on + strand, within ABZR87_RS19900at 842.109 kb on - strand, within ABZR87_RS19900at 842.109 kb on - strand, within ABZR87_RS19900at 842.136 kb on + strand, within ABZR87_RS19900at 842.137 kb on - strand, within ABZR87_RS19900at 842.137 kb on - strand, within ABZR87_RS19900at 842.285 kb on + strand, within ABZR87_RS19900at 842.285 kb on + strand, within ABZR87_RS19900at 842.285 kb on + strand, within ABZR87_RS19900at 842.286 kb on - strand, within ABZR87_RS19900at 842.286 kb on - strand, within ABZR87_RS19900at 842.286 kb on - strand, within ABZR87_RS19900at 842.540 kb on + strand, within ABZR87_RS19900at 842.540 kb on + strand, within ABZR87_RS19900

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB
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838,388 + ABZR87_RS19890 0.51 -2.7
838,388 + ABZR87_RS19890 0.51 +1.5
838,389 - ABZR87_RS19890 0.51 +0.3
838,401 + ABZR87_RS19890 0.52 +0.1
838,401 + ABZR87_RS19890 0.52 -2.0
838,402 - ABZR87_RS19890 0.52 -0.8
838,452 - ABZR87_RS19890 0.57 -1.0
838,452 - ABZR87_RS19890 0.57 -1.5
838,591 + ABZR87_RS19890 0.70 +1.7
838,591 + ABZR87_RS19890 0.70 -0.9
838,591 + ABZR87_RS19890 0.70 -1.1
838,592 - ABZR87_RS19890 0.70 +0.0
838,592 - ABZR87_RS19890 0.70 +0.4
838,678 + ABZR87_RS19890 0.78 +0.6
838,678 + ABZR87_RS19890 0.78 +0.5
838,678 + ABZR87_RS19890 0.78 -0.6
838,678 + ABZR87_RS19890 0.78 +1.7
838,678 + ABZR87_RS19890 0.78 +0.6
838,679 - ABZR87_RS19890 0.78 -1.4
838,679 - ABZR87_RS19890 0.78 -0.6
838,679 - ABZR87_RS19890 0.78 -0.7
838,679 - ABZR87_RS19890 0.78 -2.1
838,679 - ABZR87_RS19890 0.78 +0.5
838,679 - ABZR87_RS19890 0.78 +1.1
839,202 + ABZR87_RS19895 0.12 -0.7
839,202 + ABZR87_RS19895 0.12 -0.6
839,203 - ABZR87_RS19895 0.12 -0.2
839,203 - ABZR87_RS19895 0.12 -0.8
839,203 - ABZR87_RS19895 0.12 -0.8
839,232 + ABZR87_RS19895 0.13 -0.2
839,232 + ABZR87_RS19895 0.13 -0.9
839,233 - ABZR87_RS19895 0.13 +0.7
839,508 - ABZR87_RS19895 0.22 -0.2
839,508 - ABZR87_RS19895 0.22 -0.6
839,553 + ABZR87_RS19895 0.24 +1.9
839,554 - ABZR87_RS19895 0.24 +1.7
839,991 + ABZR87_RS19895 0.40 +1.7
839,991 + ABZR87_RS19895 0.40 +0.8
839,992 - ABZR87_RS19895 0.40 -0.8
839,992 - ABZR87_RS19895 0.40 +1.4
840,015 + ABZR87_RS19895 0.40 +4.8
840,015 + ABZR87_RS19895 0.40 +0.7
840,015 + ABZR87_RS19895 0.40 -1.3
840,016 - ABZR87_RS19895 0.40 +0.3
840,016 - ABZR87_RS19895 0.40 +0.4
840,462 + ABZR87_RS19895 0.56 -0.1
840,597 + ABZR87_RS19895 0.61 -1.8
840,597 + ABZR87_RS19895 0.61 +3.1
840,597 + ABZR87_RS19895 0.61 -2.2
840,598 - ABZR87_RS19895 0.61 +2.6
840,723 + ABZR87_RS19895 0.65 +0.8
840,724 - ABZR87_RS19895 0.66 +2.1
840,724 - ABZR87_RS19895 0.66 +0.0
840,724 - ABZR87_RS19895 0.66 -1.8
840,724 - ABZR87_RS19895 0.66 -0.6
840,724 - ABZR87_RS19895 0.66 -0.5
840,765 + ABZR87_RS19895 0.67 +0.1
840,765 + ABZR87_RS19895 0.67 +1.5
840,765 + ABZR87_RS19895 0.67 -0.7
840,765 + ABZR87_RS19895 0.67 -0.1
840,765 + ABZR87_RS19895 0.67 +0.4
840,766 - ABZR87_RS19895 0.67 -1.5
840,793 - ABZR87_RS19895 0.68 -0.8
840,822 + ABZR87_RS19895 0.69 +2.8
840,822 + ABZR87_RS19895 0.69 +0.7
840,978 + ABZR87_RS19895 0.75 +2.1
840,979 - ABZR87_RS19895 0.75 +0.7
841,071 + ABZR87_RS19895 0.78 -2.3
841,077 + ABZR87_RS19895 0.78 +1.1
841,077 + ABZR87_RS19895 0.78 -0.3
841,078 - ABZR87_RS19895 0.78 -1.1
841,078 - ABZR87_RS19895 0.78 -0.8
841,078 - ABZR87_RS19895 0.78 -0.8
841,078 - ABZR87_RS19895 0.78 -0.0
841,080 - ABZR87_RS19895 0.78 -1.4
841,260 + ABZR87_RS19895 0.85 +0.6
841,260 + ABZR87_RS19895 0.85 +2.1
841,260 + ABZR87_RS19895 0.85 -2.5
841,366 + ABZR87_RS19895 0.88 -0.5
841,366 + ABZR87_RS19895 0.88 -0.7
841,543 - +0.3
841,692 + -0.7
841,693 - -1.0
841,693 - -0.9
841,821 + -1.6
841,821 + -2.3
841,822 - -0.2
841,822 - -1.0
841,842 + ABZR87_RS19900 0.12 -2.3
841,842 + ABZR87_RS19900 0.12 -1.8
841,843 - ABZR87_RS19900 0.12 -1.3
841,843 - ABZR87_RS19900 0.12 -0.6
841,944 + ABZR87_RS19900 0.21 +0.3
841,944 + ABZR87_RS19900 0.21 +1.1
841,945 - ABZR87_RS19900 0.21 +0.9
842,093 + ABZR87_RS19900 0.34 -1.2
842,109 - ABZR87_RS19900 0.35 +1.8
842,109 - ABZR87_RS19900 0.35 +0.5
842,136 + ABZR87_RS19900 0.37 -0.4
842,137 - ABZR87_RS19900 0.37 +1.4
842,137 - ABZR87_RS19900 0.37 +0.8
842,285 + ABZR87_RS19900 0.50 +0.9
842,285 + ABZR87_RS19900 0.50 -1.3
842,285 + ABZR87_RS19900 0.50 -2.0
842,286 - ABZR87_RS19900 0.50 -1.5
842,286 - ABZR87_RS19900 0.50 +0.4
842,286 - ABZR87_RS19900 0.50 -0.3
842,540 + ABZR87_RS19900 0.72 -2.5
842,540 + ABZR87_RS19900 0.72 -0.2

Or see this region's nucleotide sequence