Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS19805

Experiment: Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS19800 and ABZR87_RS19805 are separated by 81 nucleotidesABZR87_RS19805 and ABZR87_RS19810 are separated by 4 nucleotidesABZR87_RS19810 and ABZR87_RS19815 are separated by 19 nucleotides ABZR87_RS19800: ABZR87_RS19800 - VOC family protein, at 814,567 to 815,640 _RS19800 ABZR87_RS19805: ABZR87_RS19805 - MFS transporter, at 815,722 to 816,912 _RS19805 ABZR87_RS19810: ABZR87_RS19810 - ThiF family adenylyltransferase, at 816,917 to 817,750 _RS19810 ABZR87_RS19815: ABZR87_RS19815 - MFS transporter, at 817,770 to 819,155 _RS19815 Position (kb) 815 816 817Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4 5 6at 814.731 kb on - strand, within ABZR87_RS19800at 814.790 kb on + strand, within ABZR87_RS19800at 814.790 kb on + strand, within ABZR87_RS19800at 814.790 kb on + strand, within ABZR87_RS19800at 814.790 kb on + strand, within ABZR87_RS19800at 814.790 kb on + strand, within ABZR87_RS19800at 814.790 kb on + strand, within ABZR87_RS19800at 814.791 kb on - strand, within ABZR87_RS19800at 814.791 kb on - strand, within ABZR87_RS19800at 814.793 kb on + strand, within ABZR87_RS19800at 814.794 kb on - strand, within ABZR87_RS19800at 814.794 kb on - strand, within ABZR87_RS19800at 814.952 kb on + strand, within ABZR87_RS19800at 814.952 kb on + strand, within ABZR87_RS19800at 814.953 kb on - strand, within ABZR87_RS19800at 815.064 kb on - strand, within ABZR87_RS19800at 815.064 kb on - strand, within ABZR87_RS19800at 815.198 kb on + strand, within ABZR87_RS19800at 815.199 kb on - strand, within ABZR87_RS19800at 815.199 kb on - strand, within ABZR87_RS19800at 815.199 kb on - strand, within ABZR87_RS19800at 815.199 kb on - strand, within ABZR87_RS19800at 815.199 kb on - strand, within ABZR87_RS19800at 815.271 kb on + strand, within ABZR87_RS19800at 815.367 kb on - strand, within ABZR87_RS19800at 815.420 kb on + strand, within ABZR87_RS19800at 815.420 kb on + strand, within ABZR87_RS19800at 815.420 kb on + strand, within ABZR87_RS19800at 815.420 kb on + strand, within ABZR87_RS19800at 815.551 kb on + strandat 815.551 kb on + strandat 815.551 kb on + strandat 815.552 kb on - strandat 815.552 kb on - strandat 815.580 kb on + strandat 815.581 kb on - strandat 815.688 kb on + strandat 815.689 kb on - strandat 815.723 kb on + strandat 815.724 kb on - strandat 816.005 kb on + strand, within ABZR87_RS19805at 816.005 kb on + strand, within ABZR87_RS19805at 816.005 kb on + strand, within ABZR87_RS19805at 816.005 kb on + strand, within ABZR87_RS19805at 816.005 kb on + strand, within ABZR87_RS19805at 816.005 kb on + strand, within ABZR87_RS19805at 816.005 kb on + strand, within ABZR87_RS19805at 816.006 kb on - strand, within ABZR87_RS19805at 816.006 kb on - strand, within ABZR87_RS19805at 816.168 kb on + strand, within ABZR87_RS19805at 816.169 kb on - strand, within ABZR87_RS19805at 816.170 kb on + strand, within ABZR87_RS19805at 816.170 kb on + strand, within ABZR87_RS19805at 816.170 kb on + strand, within ABZR87_RS19805at 816.170 kb on + strand, within ABZR87_RS19805at 816.170 kb on + strand, within ABZR87_RS19805at 816.170 kb on + strand, within ABZR87_RS19805at 816.171 kb on - strand, within ABZR87_RS19805at 816.171 kb on - strand, within ABZR87_RS19805at 816.171 kb on - strand, within ABZR87_RS19805at 816.171 kb on - strand, within ABZR87_RS19805at 816.171 kb on - strand, within ABZR87_RS19805at 816.203 kb on + strand, within ABZR87_RS19805at 816.203 kb on + strand, within ABZR87_RS19805at 816.204 kb on - strand, within ABZR87_RS19805at 816.227 kb on + strand, within ABZR87_RS19805at 816.228 kb on - strand, within ABZR87_RS19805at 816.228 kb on - strand, within ABZR87_RS19805at 816.228 kb on - strand, within ABZR87_RS19805at 816.236 kb on + strand, within ABZR87_RS19805at 816.236 kb on + strand, within ABZR87_RS19805at 816.237 kb on - strand, within ABZR87_RS19805at 816.237 kb on - strand, within ABZR87_RS19805at 816.237 kb on - strand, within ABZR87_RS19805at 816.237 kb on - strand, within ABZR87_RS19805at 816.237 kb on - strand, within ABZR87_RS19805at 816.278 kb on + strand, within ABZR87_RS19805at 816.278 kb on + strand, within ABZR87_RS19805at 816.278 kb on + strand, within ABZR87_RS19805at 816.278 kb on + strand, within ABZR87_RS19805at 816.279 kb on - strand, within ABZR87_RS19805at 816.403 kb on + strand, within ABZR87_RS19805at 816.404 kb on - strand, within ABZR87_RS19805at 816.404 kb on - strand, within ABZR87_RS19805at 816.416 kb on + strand, within ABZR87_RS19805at 816.417 kb on - strand, within ABZR87_RS19805at 816.680 kb on + strand, within ABZR87_RS19805at 816.836 kb on + strandat 816.836 kb on + strandat 816.836 kb on + strandat 816.836 kb on + strandat 816.837 kb on - strandat 816.837 kb on - strandat 816.921 kb on + strandat 816.922 kb on - strandat 817.233 kb on + strand, within ABZR87_RS19810at 817.287 kb on + strand, within ABZR87_RS19810at 817.287 kb on + strand, within ABZR87_RS19810at 817.287 kb on + strand, within ABZR87_RS19810at 817.288 kb on - strand, within ABZR87_RS19810at 817.609 kb on - strand, within ABZR87_RS19810at 817.609 kb on - strand, within ABZR87_RS19810at 817.677 kb on + strandat 817.677 kb on + strandat 817.677 kb on + strandat 817.677 kb on + strandat 817.678 kb on - strandat 817.804 kb on + strandat 817.805 kb on - strandat 817.805 kb on - strandat 817.864 kb on + strandat 817.864 kb on + strandat 817.864 kb on + strandat 817.864 kb on + strandat 817.865 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB
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814,731 - ABZR87_RS19800 0.15 +0.1
814,790 + ABZR87_RS19800 0.21 +1.1
814,790 + ABZR87_RS19800 0.21 -3.0
814,790 + ABZR87_RS19800 0.21 +1.2
814,790 + ABZR87_RS19800 0.21 -0.3
814,790 + ABZR87_RS19800 0.21 +1.1
814,790 + ABZR87_RS19800 0.21 -0.1
814,791 - ABZR87_RS19800 0.21 +0.1
814,791 - ABZR87_RS19800 0.21 +0.4
814,793 + ABZR87_RS19800 0.21 -0.7
814,794 - ABZR87_RS19800 0.21 +0.7
814,794 - ABZR87_RS19800 0.21 +0.4
814,952 + ABZR87_RS19800 0.36 +1.7
814,952 + ABZR87_RS19800 0.36 +0.9
814,953 - ABZR87_RS19800 0.36 -2.5
815,064 - ABZR87_RS19800 0.46 -0.7
815,064 - ABZR87_RS19800 0.46 -0.1
815,198 + ABZR87_RS19800 0.59 +0.8
815,199 - ABZR87_RS19800 0.59 -0.3
815,199 - ABZR87_RS19800 0.59 +0.4
815,199 - ABZR87_RS19800 0.59 -0.3
815,199 - ABZR87_RS19800 0.59 -0.6
815,199 - ABZR87_RS19800 0.59 -2.7
815,271 + ABZR87_RS19800 0.66 +1.7
815,367 - ABZR87_RS19800 0.74 -1.6
815,420 + ABZR87_RS19800 0.79 -2.4
815,420 + ABZR87_RS19800 0.79 +0.4
815,420 + ABZR87_RS19800 0.79 -1.1
815,420 + ABZR87_RS19800 0.79 +0.4
815,551 + -1.7
815,551 + -3.1
815,551 + +1.7
815,552 - +0.7
815,552 - -1.1
815,580 + +1.1
815,581 - -2.5
815,688 + -0.7
815,689 - +0.2
815,723 + -0.8
815,724 - +1.6
816,005 + ABZR87_RS19805 0.24 -0.7
816,005 + ABZR87_RS19805 0.24 +0.2
816,005 + ABZR87_RS19805 0.24 -0.1
816,005 + ABZR87_RS19805 0.24 -0.3
816,005 + ABZR87_RS19805 0.24 +1.3
816,005 + ABZR87_RS19805 0.24 -0.3
816,005 + ABZR87_RS19805 0.24 +0.6
816,006 - ABZR87_RS19805 0.24 -0.2
816,006 - ABZR87_RS19805 0.24 -0.3
816,168 + ABZR87_RS19805 0.37 -0.6
816,169 - ABZR87_RS19805 0.38 -3.0
816,170 + ABZR87_RS19805 0.38 +0.7
816,170 + ABZR87_RS19805 0.38 -2.0
816,170 + ABZR87_RS19805 0.38 -0.1
816,170 + ABZR87_RS19805 0.38 -0.1
816,170 + ABZR87_RS19805 0.38 +1.1
816,170 + ABZR87_RS19805 0.38 +0.3
816,171 - ABZR87_RS19805 0.38 +0.7
816,171 - ABZR87_RS19805 0.38 +1.3
816,171 - ABZR87_RS19805 0.38 -1.3
816,171 - ABZR87_RS19805 0.38 -0.5
816,171 - ABZR87_RS19805 0.38 +1.6
816,203 + ABZR87_RS19805 0.40 -0.7
816,203 + ABZR87_RS19805 0.40 +1.0
816,204 - ABZR87_RS19805 0.40 +1.7
816,227 + ABZR87_RS19805 0.42 +2.9
816,228 - ABZR87_RS19805 0.42 -2.1
816,228 - ABZR87_RS19805 0.42 -0.2
816,228 - ABZR87_RS19805 0.42 +0.9
816,236 + ABZR87_RS19805 0.43 -0.6
816,236 + ABZR87_RS19805 0.43 +0.5
816,237 - ABZR87_RS19805 0.43 +3.0
816,237 - ABZR87_RS19805 0.43 +1.1
816,237 - ABZR87_RS19805 0.43 -1.5
816,237 - ABZR87_RS19805 0.43 -0.5
816,237 - ABZR87_RS19805 0.43 +0.2
816,278 + ABZR87_RS19805 0.47 -2.6
816,278 + ABZR87_RS19805 0.47 -1.3
816,278 + ABZR87_RS19805 0.47 +0.4
816,278 + ABZR87_RS19805 0.47 +0.5
816,279 - ABZR87_RS19805 0.47 -2.1
816,403 + ABZR87_RS19805 0.57 +1.7
816,404 - ABZR87_RS19805 0.57 -0.9
816,404 - ABZR87_RS19805 0.57 -2.5
816,416 + ABZR87_RS19805 0.58 -0.2
816,417 - ABZR87_RS19805 0.58 -0.6
816,680 + ABZR87_RS19805 0.80 +0.6
816,836 + +0.5
816,836 + +1.1
816,836 + -1.8
816,836 + +0.0
816,837 - +0.6
816,837 - -3.0
816,921 + -0.9
816,922 - -0.9
817,233 + ABZR87_RS19810 0.38 -1.4
817,287 + ABZR87_RS19810 0.44 +0.8
817,287 + ABZR87_RS19810 0.44 -1.1
817,287 + ABZR87_RS19810 0.44 -1.4
817,288 - ABZR87_RS19810 0.44 -0.1
817,609 - ABZR87_RS19810 0.83 +1.5
817,609 - ABZR87_RS19810 0.83 -0.1
817,677 + -2.1
817,677 + +0.0
817,677 + -2.5
817,677 + +0.1
817,678 - +1.0
817,804 + -0.2
817,805 - -0.1
817,805 - +6.5
817,864 + +0.3
817,864 + -0.9
817,864 + -1.8
817,864 + +0.5
817,865 - +1.5

Or see this region's nucleotide sequence