Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS19725

Experiment: Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS19720 and ABZR87_RS19725 are separated by 4 nucleotidesABZR87_RS19725 and ABZR87_RS19730 are separated by 274 nucleotidesABZR87_RS19730 and ABZR87_RS19735 are separated by 97 nucleotides ABZR87_RS19720: ABZR87_RS19720 - efflux RND transporter periplasmic adaptor subunit, at 801,559 to 802,707 _RS19720 ABZR87_RS19725: ABZR87_RS19725 - TolC family protein, at 802,712 to 803,965 _RS19725 ABZR87_RS19730: ABZR87_RS19730 - MerR family transcriptional regulator, at 804,240 to 804,641 _RS19730 ABZR87_RS19735: ABZR87_RS19735 - hypothetical protein, at 804,739 to 805,161 _RS19735 Position (kb) 802 803 804Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 801.731 kb on + strand, within ABZR87_RS19720at 801.812 kb on + strand, within ABZR87_RS19720at 801.812 kb on + strand, within ABZR87_RS19720at 801.812 kb on + strand, within ABZR87_RS19720at 801.813 kb on - strand, within ABZR87_RS19720at 801.813 kb on - strand, within ABZR87_RS19720at 801.813 kb on - strand, within ABZR87_RS19720at 801.860 kb on - strand, within ABZR87_RS19720at 801.995 kb on + strand, within ABZR87_RS19720at 801.995 kb on + strand, within ABZR87_RS19720at 801.995 kb on + strand, within ABZR87_RS19720at 801.995 kb on + strand, within ABZR87_RS19720at 801.996 kb on - strand, within ABZR87_RS19720at 801.996 kb on - strand, within ABZR87_RS19720at 802.292 kb on + strand, within ABZR87_RS19720at 802.325 kb on + strand, within ABZR87_RS19720at 802.325 kb on + strand, within ABZR87_RS19720at 802.437 kb on - strand, within ABZR87_RS19720at 802.437 kb on - strand, within ABZR87_RS19720at 802.713 kb on + strandat 802.713 kb on + strandat 802.714 kb on - strandat 802.866 kb on + strand, within ABZR87_RS19725at 802.866 kb on + strand, within ABZR87_RS19725at 802.866 kb on + strand, within ABZR87_RS19725at 802.866 kb on + strand, within ABZR87_RS19725at 802.866 kb on + strand, within ABZR87_RS19725at 802.866 kb on - strand, within ABZR87_RS19725at 802.867 kb on - strand, within ABZR87_RS19725at 802.867 kb on - strand, within ABZR87_RS19725at 802.962 kb on + strand, within ABZR87_RS19725at 802.962 kb on + strand, within ABZR87_RS19725at 802.963 kb on - strand, within ABZR87_RS19725at 802.963 kb on - strand, within ABZR87_RS19725at 802.963 kb on - strand, within ABZR87_RS19725at 802.982 kb on + strand, within ABZR87_RS19725at 803.181 kb on + strand, within ABZR87_RS19725at 803.181 kb on + strand, within ABZR87_RS19725at 803.182 kb on - strand, within ABZR87_RS19725at 803.182 kb on - strand, within ABZR87_RS19725at 803.182 kb on - strand, within ABZR87_RS19725at 803.182 kb on - strand, within ABZR87_RS19725at 803.464 kb on - strand, within ABZR87_RS19725at 803.464 kb on - strand, within ABZR87_RS19725at 803.540 kb on + strand, within ABZR87_RS19725at 803.540 kb on + strand, within ABZR87_RS19725at 803.541 kb on - strand, within ABZR87_RS19725at 803.541 kb on - strand, within ABZR87_RS19725at 803.574 kb on + strand, within ABZR87_RS19725at 803.575 kb on - strand, within ABZR87_RS19725at 803.575 kb on - strand, within ABZR87_RS19725at 803.575 kb on - strand, within ABZR87_RS19725at 803.577 kb on + strand, within ABZR87_RS19725at 803.577 kb on + strand, within ABZR87_RS19725at 803.577 kb on + strand, within ABZR87_RS19725at 803.577 kb on + strand, within ABZR87_RS19725at 803.577 kb on + strand, within ABZR87_RS19725at 803.577 kb on + strand, within ABZR87_RS19725at 803.577 kb on + strand, within ABZR87_RS19725at 803.578 kb on - strand, within ABZR87_RS19725at 803.578 kb on - strand, within ABZR87_RS19725at 803.578 kb on - strand, within ABZR87_RS19725at 803.599 kb on - strand, within ABZR87_RS19725at 803.611 kb on - strand, within ABZR87_RS19725at 803.712 kb on + strand, within ABZR87_RS19725at 803.712 kb on + strand, within ABZR87_RS19725at 803.712 kb on + strand, within ABZR87_RS19725at 803.712 kb on + strand, within ABZR87_RS19725at 803.713 kb on - strand, within ABZR87_RS19725at 803.713 kb on - strand, within ABZR87_RS19725at 803.713 kb on - strand, within ABZR87_RS19725at 803.713 kb on - strand, within ABZR87_RS19725at 803.775 kb on + strand, within ABZR87_RS19725at 803.835 kb on + strand, within ABZR87_RS19725at 803.835 kb on + strand, within ABZR87_RS19725at 803.835 kb on + strand, within ABZR87_RS19725at 803.835 kb on + strand, within ABZR87_RS19725at 803.835 kb on + strand, within ABZR87_RS19725at 803.836 kb on - strand, within ABZR87_RS19725at 803.836 kb on - strand, within ABZR87_RS19725at 803.836 kb on - strand, within ABZR87_RS19725at 803.836 kb on - strand, within ABZR87_RS19725at 803.836 kb on - strand, within ABZR87_RS19725at 803.836 kb on - strand, within ABZR87_RS19725at 803.839 kb on + strand, within ABZR87_RS19725at 803.839 kb on + strand, within ABZR87_RS19725at 803.839 kb on + strand, within ABZR87_RS19725at 803.840 kb on - strandat 803.840 kb on - strandat 803.840 kb on - strandat 804.150 kb on + strandat 804.150 kb on + strandat 804.150 kb on + strandat 804.150 kb on + strandat 804.150 kb on + strandat 804.150 kb on + strandat 804.151 kb on - strandat 804.151 kb on - strandat 804.169 kb on + strandat 804.215 kb on + strandat 804.215 kb on + strandat 804.215 kb on + strandat 804.215 kb on + strandat 804.215 kb on + strandat 804.216 kb on - strandat 804.216 kb on - strandat 804.216 kb on - strandat 804.216 kb on - strandat 804.216 kb on - strandat 804.216 kb on - strandat 804.216 kb on - strandat 804.216 kb on - strandat 804.216 kb on - strandat 804.216 kb on - strandat 804.216 kb on - strandat 804.216 kb on - strandat 804.216 kb on - strandat 804.217 kb on + strandat 804.217 kb on + strandat 804.217 kb on + strandat 804.217 kb on + strandat 804.218 kb on - strandat 804.218 kb on - strandat 804.218 kb on - strandat 804.218 kb on - strandat 804.218 kb on - strandat 804.218 kb on - strandat 804.451 kb on + strand, within ABZR87_RS19730at 804.451 kb on + strand, within ABZR87_RS19730at 804.451 kb on + strand, within ABZR87_RS19730at 804.451 kb on + strand, within ABZR87_RS19730at 804.451 kb on + strand, within ABZR87_RS19730at 804.451 kb on + strand, within ABZR87_RS19730at 804.452 kb on - strand, within ABZR87_RS19730at 804.452 kb on - strand, within ABZR87_RS19730at 804.452 kb on - strand, within ABZR87_RS19730at 804.452 kb on - strand, within ABZR87_RS19730at 804.452 kb on - strand, within ABZR87_RS19730at 804.535 kb on + strand, within ABZR87_RS19730at 804.687 kb on + strandat 804.688 kb on - strandat 804.688 kb on - strandat 804.765 kb on + strandat 804.765 kb on + strandat 804.788 kb on - strand, within ABZR87_RS19735at 804.788 kb on - strand, within ABZR87_RS19735at 804.788 kb on - strand, within ABZR87_RS19735at 804.788 kb on - strand, within ABZR87_RS19735at 804.816 kb on + strand, within ABZR87_RS19735at 804.817 kb on - strand, within ABZR87_RS19735at 804.963 kb on + strand, within ABZR87_RS19735

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB
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801,731 + ABZR87_RS19720 0.15 -0.8
801,812 + ABZR87_RS19720 0.22 -1.3
801,812 + ABZR87_RS19720 0.22 +0.6
801,812 + ABZR87_RS19720 0.22 +0.2
801,813 - ABZR87_RS19720 0.22 -2.1
801,813 - ABZR87_RS19720 0.22 -1.4
801,813 - ABZR87_RS19720 0.22 +0.6
801,860 - ABZR87_RS19720 0.26 -1.4
801,995 + ABZR87_RS19720 0.38 -0.3
801,995 + ABZR87_RS19720 0.38 -0.0
801,995 + ABZR87_RS19720 0.38 -3.2
801,995 + ABZR87_RS19720 0.38 +0.1
801,996 - ABZR87_RS19720 0.38 -0.2
801,996 - ABZR87_RS19720 0.38 +0.1
802,292 + ABZR87_RS19720 0.64 +1.0
802,325 + ABZR87_RS19720 0.67 -0.1
802,325 + ABZR87_RS19720 0.67 +2.9
802,437 - ABZR87_RS19720 0.76 -2.5
802,437 - ABZR87_RS19720 0.76 +2.9
802,713 + -0.4
802,713 + -0.7
802,714 - -2.1
802,866 + ABZR87_RS19725 0.12 -1.5
802,866 + ABZR87_RS19725 0.12 -1.5
802,866 + ABZR87_RS19725 0.12 +2.1
802,866 + ABZR87_RS19725 0.12 -3.6
802,866 + ABZR87_RS19725 0.12 +0.1
802,866 - ABZR87_RS19725 0.12 +0.4
802,867 - ABZR87_RS19725 0.12 +0.7
802,867 - ABZR87_RS19725 0.12 +0.7
802,962 + ABZR87_RS19725 0.20 +1.0
802,962 + ABZR87_RS19725 0.20 +2.0
802,963 - ABZR87_RS19725 0.20 -0.0
802,963 - ABZR87_RS19725 0.20 -1.9
802,963 - ABZR87_RS19725 0.20 +1.2
802,982 + ABZR87_RS19725 0.22 +0.3
803,181 + ABZR87_RS19725 0.37 -1.3
803,181 + ABZR87_RS19725 0.37 +1.3
803,182 - ABZR87_RS19725 0.37 -0.3
803,182 - ABZR87_RS19725 0.37 -0.4
803,182 - ABZR87_RS19725 0.37 -0.2
803,182 - ABZR87_RS19725 0.37 -1.1
803,464 - ABZR87_RS19725 0.60 +0.8
803,464 - ABZR87_RS19725 0.60 +0.6
803,540 + ABZR87_RS19725 0.66 -0.1
803,540 + ABZR87_RS19725 0.66 +0.5
803,541 - ABZR87_RS19725 0.66 +0.5
803,541 - ABZR87_RS19725 0.66 -1.2
803,574 + ABZR87_RS19725 0.69 -2.5
803,575 - ABZR87_RS19725 0.69 -1.0
803,575 - ABZR87_RS19725 0.69 -0.1
803,575 - ABZR87_RS19725 0.69 -0.1
803,577 + ABZR87_RS19725 0.69 -0.1
803,577 + ABZR87_RS19725 0.69 +1.4
803,577 + ABZR87_RS19725 0.69 +0.7
803,577 + ABZR87_RS19725 0.69 -1.7
803,577 + ABZR87_RS19725 0.69 +0.1
803,577 + ABZR87_RS19725 0.69 -0.4
803,577 + ABZR87_RS19725 0.69 +0.4
803,578 - ABZR87_RS19725 0.69 -2.8
803,578 - ABZR87_RS19725 0.69 -1.9
803,578 - ABZR87_RS19725 0.69 +0.5
803,599 - ABZR87_RS19725 0.71 +2.3
803,611 - ABZR87_RS19725 0.72 +0.6
803,712 + ABZR87_RS19725 0.80 -2.1
803,712 + ABZR87_RS19725 0.80 +0.7
803,712 + ABZR87_RS19725 0.80 -0.0
803,712 + ABZR87_RS19725 0.80 +0.9
803,713 - ABZR87_RS19725 0.80 -2.9
803,713 - ABZR87_RS19725 0.80 +2.1
803,713 - ABZR87_RS19725 0.80 -0.1
803,713 - ABZR87_RS19725 0.80 -2.9
803,775 + ABZR87_RS19725 0.85 -1.4
803,835 + ABZR87_RS19725 0.90 -1.8
803,835 + ABZR87_RS19725 0.90 +2.0
803,835 + ABZR87_RS19725 0.90 +1.2
803,835 + ABZR87_RS19725 0.90 +1.5
803,835 + ABZR87_RS19725 0.90 -3.4
803,836 - ABZR87_RS19725 0.90 +1.1
803,836 - ABZR87_RS19725 0.90 -0.1
803,836 - ABZR87_RS19725 0.90 +2.1
803,836 - ABZR87_RS19725 0.90 -0.1
803,836 - ABZR87_RS19725 0.90 +0.0
803,836 - ABZR87_RS19725 0.90 +0.6
803,839 + ABZR87_RS19725 0.90 -0.0
803,839 + ABZR87_RS19725 0.90 +0.0
803,839 + ABZR87_RS19725 0.90 -0.4
803,840 - +0.9
803,840 - +1.1
803,840 - -0.4
804,150 + +0.3
804,150 + -1.4
804,150 + -1.9
804,150 + -1.9
804,150 + -0.9
804,150 + -0.2
804,151 - +1.0
804,151 - +2.9
804,169 + +0.0
804,215 + -0.8
804,215 + +1.5
804,215 + -1.5
804,215 + -0.9
804,215 + +1.0
804,216 - -0.9
804,216 - -0.4
804,216 - +0.5
804,216 - -0.2
804,216 - +0.5
804,216 - -1.0
804,216 - +0.8
804,216 - -2.4
804,216 - -1.4
804,216 - +2.1
804,216 - -1.4
804,216 - -0.6
804,216 - -2.1
804,217 + -1.3
804,217 + -1.2
804,217 + +0.8
804,217 + -2.0
804,218 - -0.0
804,218 - -1.4
804,218 - +0.6
804,218 - -1.6
804,218 - +0.6
804,218 - -2.2
804,451 + ABZR87_RS19730 0.52 -0.7
804,451 + ABZR87_RS19730 0.52 -1.8
804,451 + ABZR87_RS19730 0.52 +0.2
804,451 + ABZR87_RS19730 0.52 -0.1
804,451 + ABZR87_RS19730 0.52 +2.5
804,451 + ABZR87_RS19730 0.52 +0.6
804,452 - ABZR87_RS19730 0.53 +0.1
804,452 - ABZR87_RS19730 0.53 +0.5
804,452 - ABZR87_RS19730 0.53 -1.4
804,452 - ABZR87_RS19730 0.53 +1.3
804,452 - ABZR87_RS19730 0.53 +0.3
804,535 + ABZR87_RS19730 0.73 +0.9
804,687 + -1.3
804,688 - +1.6
804,688 - +0.7
804,765 + -0.2
804,765 + +0.3
804,788 - ABZR87_RS19735 0.12 -1.2
804,788 - ABZR87_RS19735 0.12 -1.4
804,788 - ABZR87_RS19735 0.12 -0.4
804,788 - ABZR87_RS19735 0.12 +0.8
804,816 + ABZR87_RS19735 0.18 -0.8
804,817 - ABZR87_RS19735 0.18 -1.9
804,963 + ABZR87_RS19735 0.53 -0.1

Or see this region's nucleotide sequence