Experiment: Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS19715 and ABZR87_RS19720 are separated by 2 nucleotides ABZR87_RS19720 and ABZR87_RS19725 are separated by 4 nucleotides
ABZR87_RS19715: ABZR87_RS19715 - CusA/CzcA family heavy metal efflux RND transporter, at 798,461 to 801,556
_RS19715
ABZR87_RS19720: ABZR87_RS19720 - efflux RND transporter periplasmic adaptor subunit, at 801,559 to 802,707
_RS19720
ABZR87_RS19725: ABZR87_RS19725 - TolC family protein, at 802,712 to 803,965
_RS19725
Position (kb) 801
802
803 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 800.595 kb on + strand, within ABZR87_RS19715 at 800.595 kb on + strand, within ABZR87_RS19715 at 800.595 kb on + strand, within ABZR87_RS19715 at 800.595 kb on + strand, within ABZR87_RS19715 at 800.596 kb on - strand, within ABZR87_RS19715 at 800.596 kb on - strand, within ABZR87_RS19715 at 800.596 kb on - strand, within ABZR87_RS19715 at 800.739 kb on + strand, within ABZR87_RS19715 at 800.739 kb on + strand, within ABZR87_RS19715 at 800.739 kb on + strand, within ABZR87_RS19715 at 800.739 kb on + strand, within ABZR87_RS19715 at 800.739 kb on + strand, within ABZR87_RS19715 at 800.740 kb on - strand, within ABZR87_RS19715 at 800.740 kb on - strand, within ABZR87_RS19715 at 800.740 kb on - strand, within ABZR87_RS19715 at 800.740 kb on - strand, within ABZR87_RS19715 at 800.740 kb on - strand, within ABZR87_RS19715 at 800.740 kb on - strand, within ABZR87_RS19715 at 800.740 kb on - strand, within ABZR87_RS19715 at 800.740 kb on - strand, within ABZR87_RS19715 at 800.740 kb on - strand, within ABZR87_RS19715 at 800.740 kb on - strand, within ABZR87_RS19715 at 800.973 kb on + strand, within ABZR87_RS19715 at 800.974 kb on - strand, within ABZR87_RS19715 at 801.010 kb on - strand, within ABZR87_RS19715 at 801.010 kb on - strand, within ABZR87_RS19715 at 801.010 kb on - strand, within ABZR87_RS19715 at 801.084 kb on + strand, within ABZR87_RS19715 at 801.084 kb on + strand, within ABZR87_RS19715 at 801.085 kb on - strand, within ABZR87_RS19715 at 801.085 kb on - strand, within ABZR87_RS19715 at 801.219 kb on + strand, within ABZR87_RS19715 at 801.219 kb on + strand, within ABZR87_RS19715 at 801.220 kb on - strand, within ABZR87_RS19715 at 801.220 kb on - strand, within ABZR87_RS19715 at 801.250 kb on + strand at 801.251 kb on - strand at 801.251 kb on - strand at 801.442 kb on - strand at 801.560 kb on + strand at 801.560 kb on + strand at 801.560 kb on + strand at 801.560 kb on + strand at 801.608 kb on - strand at 801.731 kb on + strand, within ABZR87_RS19720 at 801.812 kb on + strand, within ABZR87_RS19720 at 801.812 kb on + strand, within ABZR87_RS19720 at 801.812 kb on + strand, within ABZR87_RS19720 at 801.813 kb on - strand, within ABZR87_RS19720 at 801.813 kb on - strand, within ABZR87_RS19720 at 801.813 kb on - strand, within ABZR87_RS19720 at 801.860 kb on - strand, within ABZR87_RS19720 at 801.995 kb on + strand, within ABZR87_RS19720 at 801.995 kb on + strand, within ABZR87_RS19720 at 801.995 kb on + strand, within ABZR87_RS19720 at 801.995 kb on + strand, within ABZR87_RS19720 at 801.996 kb on - strand, within ABZR87_RS19720 at 801.996 kb on - strand, within ABZR87_RS19720 at 802.292 kb on + strand, within ABZR87_RS19720 at 802.325 kb on + strand, within ABZR87_RS19720 at 802.325 kb on + strand, within ABZR87_RS19720 at 802.437 kb on - strand, within ABZR87_RS19720 at 802.437 kb on - strand, within ABZR87_RS19720 at 802.713 kb on + strand at 802.713 kb on + strand at 802.714 kb on - strand at 802.866 kb on + strand, within ABZR87_RS19725 at 802.866 kb on + strand, within ABZR87_RS19725 at 802.866 kb on + strand, within ABZR87_RS19725 at 802.866 kb on + strand, within ABZR87_RS19725 at 802.866 kb on + strand, within ABZR87_RS19725 at 802.866 kb on - strand, within ABZR87_RS19725 at 802.867 kb on - strand, within ABZR87_RS19725 at 802.867 kb on - strand, within ABZR87_RS19725 at 802.962 kb on + strand, within ABZR87_RS19725 at 802.962 kb on + strand, within ABZR87_RS19725 at 802.963 kb on - strand, within ABZR87_RS19725 at 802.963 kb on - strand, within ABZR87_RS19725 at 802.963 kb on - strand, within ABZR87_RS19725 at 802.982 kb on + strand, within ABZR87_RS19725 at 803.181 kb on + strand, within ABZR87_RS19725 at 803.181 kb on + strand, within ABZR87_RS19725 at 803.182 kb on - strand, within ABZR87_RS19725 at 803.182 kb on - strand, within ABZR87_RS19725 at 803.182 kb on - strand, within ABZR87_RS19725 at 803.182 kb on - strand, within ABZR87_RS19725 at 803.464 kb on - strand, within ABZR87_RS19725 at 803.464 kb on - strand, within ABZR87_RS19725 at 803.540 kb on + strand, within ABZR87_RS19725 at 803.540 kb on + strand, within ABZR87_RS19725 at 803.541 kb on - strand, within ABZR87_RS19725 at 803.541 kb on - strand, within ABZR87_RS19725 at 803.574 kb on + strand, within ABZR87_RS19725 at 803.575 kb on - strand, within ABZR87_RS19725 at 803.575 kb on - strand, within ABZR87_RS19725 at 803.575 kb on - strand, within ABZR87_RS19725 at 803.577 kb on + strand, within ABZR87_RS19725 at 803.577 kb on + strand, within ABZR87_RS19725 at 803.577 kb on + strand, within ABZR87_RS19725 at 803.577 kb on + strand, within ABZR87_RS19725 at 803.577 kb on + strand, within ABZR87_RS19725 at 803.577 kb on + strand, within ABZR87_RS19725 at 803.577 kb on + strand, within ABZR87_RS19725 at 803.578 kb on - strand, within ABZR87_RS19725 at 803.578 kb on - strand, within ABZR87_RS19725 at 803.578 kb on - strand, within ABZR87_RS19725 at 803.599 kb on - strand, within ABZR87_RS19725 at 803.611 kb on - strand, within ABZR87_RS19725
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB remove 800,595 + ABZR87_RS19715 0.69 +0.6 800,595 + ABZR87_RS19715 0.69 +0.4 800,595 + ABZR87_RS19715 0.69 +1.6 800,595 + ABZR87_RS19715 0.69 -0.5 800,596 - ABZR87_RS19715 0.69 -0.4 800,596 - ABZR87_RS19715 0.69 -0.0 800,596 - ABZR87_RS19715 0.69 -1.6 800,739 + ABZR87_RS19715 0.74 -0.4 800,739 + ABZR87_RS19715 0.74 +0.8 800,739 + ABZR87_RS19715 0.74 -0.7 800,739 + ABZR87_RS19715 0.74 +1.3 800,739 + ABZR87_RS19715 0.74 +0.4 800,740 - ABZR87_RS19715 0.74 -0.8 800,740 - ABZR87_RS19715 0.74 +0.6 800,740 - ABZR87_RS19715 0.74 -2.7 800,740 - ABZR87_RS19715 0.74 -2.5 800,740 - ABZR87_RS19715 0.74 -0.4 800,740 - ABZR87_RS19715 0.74 -0.4 800,740 - ABZR87_RS19715 0.74 +0.6 800,740 - ABZR87_RS19715 0.74 -0.6 800,740 - ABZR87_RS19715 0.74 -0.6 800,740 - ABZR87_RS19715 0.74 -3.1 800,973 + ABZR87_RS19715 0.81 -3.0 800,974 - ABZR87_RS19715 0.81 +1.6 801,010 - ABZR87_RS19715 0.82 -2.5 801,010 - ABZR87_RS19715 0.82 +1.2 801,010 - ABZR87_RS19715 0.82 -0.6 801,084 + ABZR87_RS19715 0.85 +0.6 801,084 + ABZR87_RS19715 0.85 +1.6 801,085 - ABZR87_RS19715 0.85 -0.6 801,085 - ABZR87_RS19715 0.85 -1.2 801,219 + ABZR87_RS19715 0.89 -1.5 801,219 + ABZR87_RS19715 0.89 +1.0 801,220 - ABZR87_RS19715 0.89 -1.6 801,220 - ABZR87_RS19715 0.89 -2.3 801,250 + -0.2 801,251 - -0.0 801,251 - -1.2 801,442 - -0.7 801,560 + -1.3 801,560 + +0.0 801,560 + +0.2 801,560 + +1.1 801,608 - -0.4 801,731 + ABZR87_RS19720 0.15 -0.8 801,812 + ABZR87_RS19720 0.22 -1.3 801,812 + ABZR87_RS19720 0.22 +0.6 801,812 + ABZR87_RS19720 0.22 +0.2 801,813 - ABZR87_RS19720 0.22 -2.1 801,813 - ABZR87_RS19720 0.22 -1.4 801,813 - ABZR87_RS19720 0.22 +0.6 801,860 - ABZR87_RS19720 0.26 -1.4 801,995 + ABZR87_RS19720 0.38 -0.3 801,995 + ABZR87_RS19720 0.38 -0.0 801,995 + ABZR87_RS19720 0.38 -3.2 801,995 + ABZR87_RS19720 0.38 +0.1 801,996 - ABZR87_RS19720 0.38 -0.2 801,996 - ABZR87_RS19720 0.38 +0.1 802,292 + ABZR87_RS19720 0.64 +1.0 802,325 + ABZR87_RS19720 0.67 -0.1 802,325 + ABZR87_RS19720 0.67 +2.9 802,437 - ABZR87_RS19720 0.76 -2.5 802,437 - ABZR87_RS19720 0.76 +2.9 802,713 + -0.4 802,713 + -0.7 802,714 - -2.1 802,866 + ABZR87_RS19725 0.12 -1.5 802,866 + ABZR87_RS19725 0.12 -1.5 802,866 + ABZR87_RS19725 0.12 +2.1 802,866 + ABZR87_RS19725 0.12 -3.6 802,866 + ABZR87_RS19725 0.12 +0.1 802,866 - ABZR87_RS19725 0.12 +0.4 802,867 - ABZR87_RS19725 0.12 +0.7 802,867 - ABZR87_RS19725 0.12 +0.7 802,962 + ABZR87_RS19725 0.20 +1.0 802,962 + ABZR87_RS19725 0.20 +2.0 802,963 - ABZR87_RS19725 0.20 -0.0 802,963 - ABZR87_RS19725 0.20 -1.9 802,963 - ABZR87_RS19725 0.20 +1.2 802,982 + ABZR87_RS19725 0.22 +0.3 803,181 + ABZR87_RS19725 0.37 -1.3 803,181 + ABZR87_RS19725 0.37 +1.3 803,182 - ABZR87_RS19725 0.37 -0.3 803,182 - ABZR87_RS19725 0.37 -0.4 803,182 - ABZR87_RS19725 0.37 -0.2 803,182 - ABZR87_RS19725 0.37 -1.1 803,464 - ABZR87_RS19725 0.60 +0.8 803,464 - ABZR87_RS19725 0.60 +0.6 803,540 + ABZR87_RS19725 0.66 -0.1 803,540 + ABZR87_RS19725 0.66 +0.5 803,541 - ABZR87_RS19725 0.66 +0.5 803,541 - ABZR87_RS19725 0.66 -1.2 803,574 + ABZR87_RS19725 0.69 -2.5 803,575 - ABZR87_RS19725 0.69 -1.0 803,575 - ABZR87_RS19725 0.69 -0.1 803,575 - ABZR87_RS19725 0.69 -0.1 803,577 + ABZR87_RS19725 0.69 -0.1 803,577 + ABZR87_RS19725 0.69 +1.4 803,577 + ABZR87_RS19725 0.69 +0.7 803,577 + ABZR87_RS19725 0.69 -1.7 803,577 + ABZR87_RS19725 0.69 +0.1 803,577 + ABZR87_RS19725 0.69 -0.4 803,577 + ABZR87_RS19725 0.69 +0.4 803,578 - ABZR87_RS19725 0.69 -2.8 803,578 - ABZR87_RS19725 0.69 -1.9 803,578 - ABZR87_RS19725 0.69 +0.5 803,599 - ABZR87_RS19725 0.71 +2.3 803,611 - ABZR87_RS19725 0.72 +0.6
Or see this region's nucleotide sequence