Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS18965

Experiment: Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS18960 and ABZR87_RS18965 are separated by 91 nucleotidesABZR87_RS18965 and ABZR87_RS18970 are separated by 185 nucleotides ABZR87_RS18960: ABZR87_RS18960 - MFS transporter, at 610,037 to 611,299 _RS18960 ABZR87_RS18965: ABZR87_RS18965 - cardiolipin synthase, at 611,391 to 612,824 _RS18965 ABZR87_RS18970: ABZR87_RS18970 - phospholipase D family protein, at 613,010 to 614,743 _RS18970 Position (kb) 611 612 613Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 610.500 kb on + strand, within ABZR87_RS18960at 610.500 kb on + strand, within ABZR87_RS18960at 610.500 kb on + strand, within ABZR87_RS18960at 610.851 kb on + strand, within ABZR87_RS18960at 611.458 kb on + strandat 611.459 kb on - strandat 611.459 kb on - strandat 611.659 kb on + strand, within ABZR87_RS18965at 611.660 kb on - strand, within ABZR87_RS18965at 611.660 kb on - strand, within ABZR87_RS18965at 611.660 kb on - strand, within ABZR87_RS18965at 611.666 kb on - strand, within ABZR87_RS18965at 611.666 kb on - strand, within ABZR87_RS18965at 611.695 kb on + strand, within ABZR87_RS18965at 611.701 kb on + strand, within ABZR87_RS18965at 611.701 kb on + strand, within ABZR87_RS18965at 611.701 kb on + strand, within ABZR87_RS18965at 611.701 kb on + strand, within ABZR87_RS18965at 611.824 kb on + strand, within ABZR87_RS18965at 611.824 kb on + strand, within ABZR87_RS18965at 611.824 kb on + strand, within ABZR87_RS18965at 611.995 kb on + strand, within ABZR87_RS18965at 611.995 kb on + strand, within ABZR87_RS18965at 611.996 kb on - strand, within ABZR87_RS18965at 612.053 kb on + strand, within ABZR87_RS18965at 612.053 kb on + strand, within ABZR87_RS18965at 612.054 kb on - strand, within ABZR87_RS18965at 612.059 kb on + strand, within ABZR87_RS18965at 612.059 kb on + strand, within ABZR87_RS18965at 612.097 kb on + strand, within ABZR87_RS18965at 612.097 kb on + strand, within ABZR87_RS18965at 612.097 kb on + strand, within ABZR87_RS18965at 612.097 kb on + strand, within ABZR87_RS18965at 612.097 kb on + strand, within ABZR87_RS18965at 612.097 kb on + strand, within ABZR87_RS18965at 612.098 kb on - strand, within ABZR87_RS18965at 612.098 kb on - strand, within ABZR87_RS18965at 612.098 kb on - strand, within ABZR87_RS18965at 612.127 kb on + strand, within ABZR87_RS18965at 612.128 kb on - strand, within ABZR87_RS18965at 612.128 kb on - strand, within ABZR87_RS18965at 612.257 kb on - strand, within ABZR87_RS18965at 612.257 kb on - strand, within ABZR87_RS18965at 612.301 kb on + strand, within ABZR87_RS18965at 612.301 kb on + strand, within ABZR87_RS18965at 612.301 kb on + strand, within ABZR87_RS18965at 612.631 kb on + strand, within ABZR87_RS18965at 612.664 kb on + strand, within ABZR87_RS18965at 612.731 kb on + strandat 612.731 kb on + strandat 612.732 kb on - strandat 612.732 kb on - strandat 612.732 kb on - strandat 612.920 kb on + strandat 612.921 kb on - strandat 613.000 kb on + strandat 613.002 kb on + strandat 613.005 kb on - strandat 613.127 kb on - strandat 613.241 kb on + strand, within ABZR87_RS18970at 613.241 kb on + strand, within ABZR87_RS18970at 613.242 kb on - strand, within ABZR87_RS18970at 613.242 kb on - strand, within ABZR87_RS18970at 613.295 kb on + strand, within ABZR87_RS18970at 613.295 kb on + strand, within ABZR87_RS18970at 613.295 kb on + strand, within ABZR87_RS18970at 613.296 kb on - strand, within ABZR87_RS18970at 613.455 kb on + strand, within ABZR87_RS18970at 613.455 kb on + strand, within ABZR87_RS18970at 613.455 kb on + strand, within ABZR87_RS18970at 613.455 kb on + strand, within ABZR87_RS18970at 613.456 kb on - strand, within ABZR87_RS18970at 613.505 kb on + strand, within ABZR87_RS18970at 613.505 kb on + strand, within ABZR87_RS18970at 613.616 kb on + strand, within ABZR87_RS18970at 613.709 kb on + strand, within ABZR87_RS18970at 613.709 kb on + strand, within ABZR87_RS18970

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB
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610,500 + ABZR87_RS18960 0.37 +1.9
610,500 + ABZR87_RS18960 0.37 -0.3
610,500 + ABZR87_RS18960 0.37 -1.6
610,851 + ABZR87_RS18960 0.64 +0.5
611,458 + +0.3
611,459 - +0.0
611,459 - -1.2
611,659 + ABZR87_RS18965 0.19 -0.5
611,660 - ABZR87_RS18965 0.19 -0.6
611,660 - ABZR87_RS18965 0.19 -0.2
611,660 - ABZR87_RS18965 0.19 -2.2
611,666 - ABZR87_RS18965 0.19 +0.2
611,666 - ABZR87_RS18965 0.19 +2.1
611,695 + ABZR87_RS18965 0.21 -1.8
611,701 + ABZR87_RS18965 0.22 -0.1
611,701 + ABZR87_RS18965 0.22 +2.1
611,701 + ABZR87_RS18965 0.22 +0.4
611,701 + ABZR87_RS18965 0.22 +0.8
611,824 + ABZR87_RS18965 0.30 +1.5
611,824 + ABZR87_RS18965 0.30 -1.8
611,824 + ABZR87_RS18965 0.30 -1.0
611,995 + ABZR87_RS18965 0.42 +0.8
611,995 + ABZR87_RS18965 0.42 +0.8
611,996 - ABZR87_RS18965 0.42 -2.5
612,053 + ABZR87_RS18965 0.46 -0.1
612,053 + ABZR87_RS18965 0.46 +0.9
612,054 - ABZR87_RS18965 0.46 -0.8
612,059 + ABZR87_RS18965 0.47 +1.0
612,059 + ABZR87_RS18965 0.47 -0.2
612,097 + ABZR87_RS18965 0.49 -0.3
612,097 + ABZR87_RS18965 0.49 +0.9
612,097 + ABZR87_RS18965 0.49 -1.4
612,097 + ABZR87_RS18965 0.49 -1.9
612,097 + ABZR87_RS18965 0.49 -0.8
612,097 + ABZR87_RS18965 0.49 -0.8
612,098 - ABZR87_RS18965 0.49 +0.7
612,098 - ABZR87_RS18965 0.49 +0.3
612,098 - ABZR87_RS18965 0.49 -0.2
612,127 + ABZR87_RS18965 0.51 +1.8
612,128 - ABZR87_RS18965 0.51 -0.2
612,128 - ABZR87_RS18965 0.51 -0.4
612,257 - ABZR87_RS18965 0.60 -1.8
612,257 - ABZR87_RS18965 0.60 -0.3
612,301 + ABZR87_RS18965 0.63 -1.0
612,301 + ABZR87_RS18965 0.63 -1.5
612,301 + ABZR87_RS18965 0.63 +0.5
612,631 + ABZR87_RS18965 0.86 -1.2
612,664 + ABZR87_RS18965 0.89 -2.6
612,731 + +0.2
612,731 + -0.4
612,732 - -3.7
612,732 - -1.9
612,732 - -0.8
612,920 + -2.6
612,921 - +0.3
613,000 + +4.1
613,002 + -0.8
613,005 - +0.1
613,127 - -2.1
613,241 + ABZR87_RS18970 0.13 -0.3
613,241 + ABZR87_RS18970 0.13 +0.7
613,242 - ABZR87_RS18970 0.13 -0.0
613,242 - ABZR87_RS18970 0.13 -0.3
613,295 + ABZR87_RS18970 0.16 +0.0
613,295 + ABZR87_RS18970 0.16 +1.0
613,295 + ABZR87_RS18970 0.16 -0.6
613,296 - ABZR87_RS18970 0.16 +0.2
613,455 + ABZR87_RS18970 0.26 +1.6
613,455 + ABZR87_RS18970 0.26 +0.2
613,455 + ABZR87_RS18970 0.26 -1.4
613,455 + ABZR87_RS18970 0.26 -0.8
613,456 - ABZR87_RS18970 0.26 +1.5
613,505 + ABZR87_RS18970 0.29 -1.0
613,505 + ABZR87_RS18970 0.29 -0.2
613,616 + ABZR87_RS18970 0.35 -0.6
613,709 + ABZR87_RS18970 0.40 +0.4
613,709 + ABZR87_RS18970 0.40 -0.0

Or see this region's nucleotide sequence