Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS18445

Experiment: Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS18435 and ABZR87_RS18440 overlap by 4 nucleotidesABZR87_RS18440 and ABZR87_RS18445 are separated by 8 nucleotidesABZR87_RS18445 and ABZR87_RS18450 overlap by 1 nucleotides ABZR87_RS18435: ABZR87_RS18435 - 2-dehydropantoate 2-reductase, at 497,619 to 498,569 _RS18435 ABZR87_RS18440: ABZR87_RS18440 - VOC family protein, at 498,566 to 498,958 _RS18440 ABZR87_RS18445: ABZR87_RS18445 - MaoC family dehydratase, at 498,967 to 499,425 _RS18445 ABZR87_RS18450: ABZR87_RS18450 - CoA transferase, at 499,425 to 500,651 _RS18450 Position (kb) 498 499 500Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 497.994 kb on + strand, within ABZR87_RS18435at 497.994 kb on + strand, within ABZR87_RS18435at 497.994 kb on + strand, within ABZR87_RS18435at 497.994 kb on + strand, within ABZR87_RS18435at 497.995 kb on - strand, within ABZR87_RS18435at 497.995 kb on - strand, within ABZR87_RS18435at 498.026 kb on + strand, within ABZR87_RS18435at 498.026 kb on + strand, within ABZR87_RS18435at 498.026 kb on + strand, within ABZR87_RS18435at 498.026 kb on + strand, within ABZR87_RS18435at 498.027 kb on - strand, within ABZR87_RS18435at 498.057 kb on + strand, within ABZR87_RS18435at 498.058 kb on - strand, within ABZR87_RS18435at 498.058 kb on - strand, within ABZR87_RS18435at 498.058 kb on - strand, within ABZR87_RS18435at 498.228 kb on + strand, within ABZR87_RS18435at 498.229 kb on - strand, within ABZR87_RS18435at 498.229 kb on - strand, within ABZR87_RS18435at 498.241 kb on - strand, within ABZR87_RS18435at 498.584 kb on + strandat 498.585 kb on - strandat 498.701 kb on + strand, within ABZR87_RS18440at 498.702 kb on - strand, within ABZR87_RS18440at 498.853 kb on + strand, within ABZR87_RS18440at 498.854 kb on - strand, within ABZR87_RS18440at 499.030 kb on + strand, within ABZR87_RS18445at 499.031 kb on - strand, within ABZR87_RS18445at 499.060 kb on + strand, within ABZR87_RS18445at 499.108 kb on + strand, within ABZR87_RS18445at 499.108 kb on + strand, within ABZR87_RS18445at 499.108 kb on + strand, within ABZR87_RS18445at 499.464 kb on + strandat 499.489 kb on - strandat 499.489 kb on - strandat 499.603 kb on - strand, within ABZR87_RS18450at 499.716 kb on + strand, within ABZR87_RS18450at 499.717 kb on - strand, within ABZR87_RS18450at 499.753 kb on - strand, within ABZR87_RS18450at 499.789 kb on - strand, within ABZR87_RS18450at 499.789 kb on - strand, within ABZR87_RS18450at 499.938 kb on + strand, within ABZR87_RS18450at 499.938 kb on + strand, within ABZR87_RS18450at 499.938 kb on + strand, within ABZR87_RS18450at 499.938 kb on + strand, within ABZR87_RS18450at 499.939 kb on - strand, within ABZR87_RS18450at 500.029 kb on - strand, within ABZR87_RS18450at 500.029 kb on - strand, within ABZR87_RS18450at 500.055 kb on + strand, within ABZR87_RS18450at 500.056 kb on - strand, within ABZR87_RS18450at 500.056 kb on - strand, within ABZR87_RS18450at 500.070 kb on + strand, within ABZR87_RS18450at 500.070 kb on + strand, within ABZR87_RS18450at 500.070 kb on + strand, within ABZR87_RS18450at 500.071 kb on - strand, within ABZR87_RS18450at 500.130 kb on + strand, within ABZR87_RS18450at 500.131 kb on - strand, within ABZR87_RS18450

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB
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497,994 + ABZR87_RS18435 0.39 -0.0
497,994 + ABZR87_RS18435 0.39 +0.3
497,994 + ABZR87_RS18435 0.39 +3.2
497,994 + ABZR87_RS18435 0.39 +0.6
497,995 - ABZR87_RS18435 0.40 -0.3
497,995 - ABZR87_RS18435 0.40 -0.4
498,026 + ABZR87_RS18435 0.43 +0.9
498,026 + ABZR87_RS18435 0.43 +0.5
498,026 + ABZR87_RS18435 0.43 -0.2
498,026 + ABZR87_RS18435 0.43 +2.5
498,027 - ABZR87_RS18435 0.43 -3.5
498,057 + ABZR87_RS18435 0.46 -0.5
498,058 - ABZR87_RS18435 0.46 +0.8
498,058 - ABZR87_RS18435 0.46 -1.1
498,058 - ABZR87_RS18435 0.46 +0.4
498,228 + ABZR87_RS18435 0.64 -0.2
498,229 - ABZR87_RS18435 0.64 +0.7
498,229 - ABZR87_RS18435 0.64 -1.9
498,241 - ABZR87_RS18435 0.65 -0.8
498,584 + -1.1
498,585 - -0.9
498,701 + ABZR87_RS18440 0.34 +0.9
498,702 - ABZR87_RS18440 0.35 +1.6
498,853 + ABZR87_RS18440 0.73 -1.5
498,854 - ABZR87_RS18440 0.73 +0.4
499,030 + ABZR87_RS18445 0.14 +0.8
499,031 - ABZR87_RS18445 0.14 -0.8
499,060 + ABZR87_RS18445 0.20 -0.0
499,108 + ABZR87_RS18445 0.31 -1.1
499,108 + ABZR87_RS18445 0.31 -1.8
499,108 + ABZR87_RS18445 0.31 -0.1
499,464 + +2.2
499,489 - +1.1
499,489 - -1.2
499,603 - ABZR87_RS18450 0.15 +3.7
499,716 + ABZR87_RS18450 0.24 +0.3
499,717 - ABZR87_RS18450 0.24 -0.8
499,753 - ABZR87_RS18450 0.27 +0.2
499,789 - ABZR87_RS18450 0.30 -2.6
499,789 - ABZR87_RS18450 0.30 -2.1
499,938 + ABZR87_RS18450 0.42 -0.6
499,938 + ABZR87_RS18450 0.42 -1.8
499,938 + ABZR87_RS18450 0.42 -0.3
499,938 + ABZR87_RS18450 0.42 -0.7
499,939 - ABZR87_RS18450 0.42 -0.4
500,029 - ABZR87_RS18450 0.49 -0.0
500,029 - ABZR87_RS18450 0.49 -0.0
500,055 + ABZR87_RS18450 0.51 +1.6
500,056 - ABZR87_RS18450 0.51 -1.4
500,056 - ABZR87_RS18450 0.51 -0.2
500,070 + ABZR87_RS18450 0.53 -0.1
500,070 + ABZR87_RS18450 0.53 -0.7
500,070 + ABZR87_RS18450 0.53 -2.7
500,071 - ABZR87_RS18450 0.53 +1.3
500,130 + ABZR87_RS18450 0.57 -0.6
500,131 - ABZR87_RS18450 0.58 +3.1

Or see this region's nucleotide sequence