Experiment: Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS18415 and ABZR87_RS18420 are separated by 122 nucleotides ABZR87_RS18420 and ABZR87_RS18425 are separated by 59 nucleotides ABZR87_RS18425 and ABZR87_RS18430 are separated by 97 nucleotides ABZR87_RS18430 and ABZR87_RS18435 are separated by 81 nucleotides
ABZR87_RS18415: ABZR87_RS18415 - hypothetical protein, at 495,340 to 495,666
_RS18415
ABZR87_RS18420: ABZR87_RS18420 - hypothetical protein, at 495,789 to 496,169
_RS18420
ABZR87_RS18425: ABZR87_RS18425 - hypothetical protein, at 496,229 to 496,519
_RS18425
ABZR87_RS18430: ABZR87_RS18430 - LysR family transcriptional regulator, at 496,617 to 497,537
_RS18430
ABZR87_RS18435: ABZR87_RS18435 - 2-dehydropantoate 2-reductase, at 497,619 to 498,569
_RS18435
Position (kb) 496
497
498 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 495.856 kb on - strand, within ABZR87_RS18420 at 495.856 kb on - strand, within ABZR87_RS18420 at 495.875 kb on + strand, within ABZR87_RS18420 at 495.876 kb on - strand, within ABZR87_RS18420 at 496.130 kb on - strand, within ABZR87_RS18420 at 496.167 kb on + strand at 496.168 kb on - strand at 496.168 kb on - strand at 496.173 kb on + strand at 496.173 kb on + strand at 496.195 kb on + strand at 496.195 kb on + strand at 496.195 kb on + strand at 496.195 kb on + strand at 496.196 kb on - strand at 496.196 kb on - strand at 496.253 kb on + strand at 496.283 kb on + strand, within ABZR87_RS18425 at 496.334 kb on + strand, within ABZR87_RS18425 at 496.334 kb on + strand, within ABZR87_RS18425 at 496.334 kb on + strand, within ABZR87_RS18425 at 496.334 kb on + strand, within ABZR87_RS18425 at 496.335 kb on - strand, within ABZR87_RS18425 at 496.335 kb on - strand, within ABZR87_RS18425 at 496.335 kb on - strand, within ABZR87_RS18425 at 496.335 kb on - strand, within ABZR87_RS18425 at 496.378 kb on + strand, within ABZR87_RS18425 at 496.379 kb on - strand, within ABZR87_RS18425 at 496.379 kb on - strand, within ABZR87_RS18425 at 496.393 kb on + strand, within ABZR87_RS18425 at 496.393 kb on + strand, within ABZR87_RS18425 at 496.393 kb on + strand, within ABZR87_RS18425 at 496.517 kb on + strand at 496.518 kb on - strand at 496.518 kb on - strand at 496.518 kb on - strand at 496.518 kb on - strand at 496.518 kb on - strand at 496.518 kb on - strand at 496.518 kb on - strand at 496.525 kb on + strand at 496.525 kb on + strand at 496.525 kb on + strand at 496.525 kb on + strand at 496.525 kb on + strand at 496.526 kb on - strand at 496.608 kb on + strand at 496.799 kb on + strand, within ABZR87_RS18430 at 496.848 kb on + strand, within ABZR87_RS18430 at 496.849 kb on - strand, within ABZR87_RS18430 at 496.849 kb on - strand, within ABZR87_RS18430 at 497.008 kb on - strand, within ABZR87_RS18430 at 497.023 kb on + strand, within ABZR87_RS18430 at 497.023 kb on + strand, within ABZR87_RS18430 at 497.023 kb on + strand, within ABZR87_RS18430 at 497.024 kb on + strand, within ABZR87_RS18430 at 497.024 kb on - strand, within ABZR87_RS18430 at 497.038 kb on + strand, within ABZR87_RS18430 at 497.038 kb on + strand, within ABZR87_RS18430 at 497.038 kb on + strand, within ABZR87_RS18430 at 497.039 kb on - strand, within ABZR87_RS18430 at 497.039 kb on - strand, within ABZR87_RS18430 at 497.039 kb on - strand, within ABZR87_RS18430 at 497.039 kb on - strand, within ABZR87_RS18430 at 497.039 kb on - strand, within ABZR87_RS18430 at 497.039 kb on - strand, within ABZR87_RS18430 at 497.065 kb on + strand, within ABZR87_RS18430 at 497.112 kb on - strand, within ABZR87_RS18430 at 497.163 kb on + strand, within ABZR87_RS18430 at 497.163 kb on + strand, within ABZR87_RS18430 at 497.164 kb on - strand, within ABZR87_RS18430 at 497.164 kb on - strand, within ABZR87_RS18430 at 497.164 kb on - strand, within ABZR87_RS18430 at 497.380 kb on + strand, within ABZR87_RS18430 at 497.380 kb on + strand, within ABZR87_RS18430 at 497.381 kb on - strand, within ABZR87_RS18430 at 497.467 kb on + strand at 497.468 kb on - strand at 497.572 kb on + strand at 497.574 kb on + strand at 497.588 kb on + strand at 497.588 kb on + strand at 497.588 kb on + strand at 497.994 kb on + strand, within ABZR87_RS18435 at 497.994 kb on + strand, within ABZR87_RS18435 at 497.994 kb on + strand, within ABZR87_RS18435 at 497.994 kb on + strand, within ABZR87_RS18435 at 497.995 kb on - strand, within ABZR87_RS18435 at 497.995 kb on - strand, within ABZR87_RS18435 at 498.026 kb on + strand, within ABZR87_RS18435 at 498.026 kb on + strand, within ABZR87_RS18435 at 498.026 kb on + strand, within ABZR87_RS18435 at 498.026 kb on + strand, within ABZR87_RS18435 at 498.027 kb on - strand, within ABZR87_RS18435 at 498.057 kb on + strand, within ABZR87_RS18435 at 498.058 kb on - strand, within ABZR87_RS18435 at 498.058 kb on - strand, within ABZR87_RS18435 at 498.058 kb on - strand, within ABZR87_RS18435 at 498.228 kb on + strand, within ABZR87_RS18435 at 498.229 kb on - strand, within ABZR87_RS18435 at 498.229 kb on - strand, within ABZR87_RS18435 at 498.241 kb on - strand, within ABZR87_RS18435
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB remove 495,856 - ABZR87_RS18420 0.18 -1.1 495,856 - ABZR87_RS18420 0.18 -0.6 495,875 + ABZR87_RS18420 0.23 -0.4 495,876 - ABZR87_RS18420 0.23 -0.3 496,130 - ABZR87_RS18420 0.90 +0.0 496,167 + +1.0 496,168 - +0.8 496,168 - -1.4 496,173 + +0.8 496,173 + +2.4 496,195 + +0.6 496,195 + +0.5 496,195 + -1.5 496,195 + +0.3 496,196 - +0.2 496,196 - -0.1 496,253 + -2.8 496,283 + ABZR87_RS18425 0.19 -0.2 496,334 + ABZR87_RS18425 0.36 +0.1 496,334 + ABZR87_RS18425 0.36 -2.9 496,334 + ABZR87_RS18425 0.36 +0.6 496,334 + ABZR87_RS18425 0.36 -1.0 496,335 - ABZR87_RS18425 0.36 -1.8 496,335 - ABZR87_RS18425 0.36 -0.7 496,335 - ABZR87_RS18425 0.36 -0.4 496,335 - ABZR87_RS18425 0.36 +0.2 496,378 + ABZR87_RS18425 0.51 +0.7 496,379 - ABZR87_RS18425 0.52 -1.2 496,379 - ABZR87_RS18425 0.52 -3.7 496,393 + ABZR87_RS18425 0.56 -0.7 496,393 + ABZR87_RS18425 0.56 -2.9 496,393 + ABZR87_RS18425 0.56 -1.5 496,517 + +1.8 496,518 - +0.2 496,518 - +1.1 496,518 - +0.2 496,518 - -2.2 496,518 - -0.6 496,518 - -0.0 496,518 - +1.7 496,525 + +0.8 496,525 + +1.4 496,525 + +0.2 496,525 + -1.8 496,525 + -0.1 496,526 - -0.6 496,608 + -1.3 496,799 + ABZR87_RS18430 0.20 -0.1 496,848 + ABZR87_RS18430 0.25 -0.2 496,849 - ABZR87_RS18430 0.25 +0.2 496,849 - ABZR87_RS18430 0.25 -0.2 497,008 - ABZR87_RS18430 0.42 -0.3 497,023 + ABZR87_RS18430 0.44 -0.7 497,023 + ABZR87_RS18430 0.44 -1.6 497,023 + ABZR87_RS18430 0.44 -1.3 497,024 + ABZR87_RS18430 0.44 -2.6 497,024 - ABZR87_RS18430 0.44 -0.9 497,038 + ABZR87_RS18430 0.46 +0.1 497,038 + ABZR87_RS18430 0.46 +2.2 497,038 + ABZR87_RS18430 0.46 -0.3 497,039 - ABZR87_RS18430 0.46 -0.1 497,039 - ABZR87_RS18430 0.46 +0.6 497,039 - ABZR87_RS18430 0.46 -1.0 497,039 - ABZR87_RS18430 0.46 -1.9 497,039 - ABZR87_RS18430 0.46 -1.6 497,039 - ABZR87_RS18430 0.46 +0.3 497,065 + ABZR87_RS18430 0.49 -0.6 497,112 - ABZR87_RS18430 0.54 -1.4 497,163 + ABZR87_RS18430 0.59 -1.3 497,163 + ABZR87_RS18430 0.59 +2.7 497,164 - ABZR87_RS18430 0.59 -2.3 497,164 - ABZR87_RS18430 0.59 -2.7 497,164 - ABZR87_RS18430 0.59 +1.3 497,380 + ABZR87_RS18430 0.83 -1.4 497,380 + ABZR87_RS18430 0.83 -0.6 497,381 - ABZR87_RS18430 0.83 +0.4 497,467 + -0.6 497,468 - +0.2 497,572 + +0.6 497,574 + +0.2 497,588 + -0.4 497,588 + -1.3 497,588 + +1.2 497,994 + ABZR87_RS18435 0.39 -0.0 497,994 + ABZR87_RS18435 0.39 +0.3 497,994 + ABZR87_RS18435 0.39 +3.2 497,994 + ABZR87_RS18435 0.39 +0.6 497,995 - ABZR87_RS18435 0.40 -0.3 497,995 - ABZR87_RS18435 0.40 -0.4 498,026 + ABZR87_RS18435 0.43 +0.9 498,026 + ABZR87_RS18435 0.43 +0.5 498,026 + ABZR87_RS18435 0.43 -0.2 498,026 + ABZR87_RS18435 0.43 +2.5 498,027 - ABZR87_RS18435 0.43 -3.5 498,057 + ABZR87_RS18435 0.46 -0.5 498,058 - ABZR87_RS18435 0.46 +0.8 498,058 - ABZR87_RS18435 0.46 -1.1 498,058 - ABZR87_RS18435 0.46 +0.4 498,228 + ABZR87_RS18435 0.64 -0.2 498,229 - ABZR87_RS18435 0.64 +0.7 498,229 - ABZR87_RS18435 0.64 -1.9 498,241 - ABZR87_RS18435 0.65 -0.8
Or see this region's nucleotide sequence