Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS16785

Experiment: Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS16780 and ABZR87_RS16785 are separated by 53 nucleotidesABZR87_RS16785 and ABZR87_RS16790 are separated by 37 nucleotidesABZR87_RS16790 and ABZR87_RS16795 are separated by 141 nucleotides ABZR87_RS16780: ABZR87_RS16780 - YadA-like family protein, at 118,571 to 123,865 _RS16780 ABZR87_RS16785: ABZR87_RS16785 - outer membrane protein assembly factor BamE, at 123,919 to 124,308 _RS16785 ABZR87_RS16790: ABZR87_RS16790 - DUF4019 domain-containing protein, at 124,346 to 124,819 _RS16790 ABZR87_RS16795: ABZR87_RS16795 - VOC family protein, at 124,961 to 125,440 _RS16795 Position (kb) 123 124 125Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 123.028 kb on + strand, within ABZR87_RS16780at 123.028 kb on + strand, within ABZR87_RS16780at 123.029 kb on - strand, within ABZR87_RS16780at 123.053 kb on + strand, within ABZR87_RS16780at 123.053 kb on + strand, within ABZR87_RS16780at 123.053 kb on + strand, within ABZR87_RS16780at 123.053 kb on + strand, within ABZR87_RS16780at 123.053 kb on + strand, within ABZR87_RS16780at 123.053 kb on + strand, within ABZR87_RS16780at 123.053 kb on + strand, within ABZR87_RS16780at 123.053 kb on + strand, within ABZR87_RS16780at 123.054 kb on - strand, within ABZR87_RS16780at 123.054 kb on - strand, within ABZR87_RS16780at 123.054 kb on - strand, within ABZR87_RS16780at 123.054 kb on - strand, within ABZR87_RS16780at 123.203 kb on + strand, within ABZR87_RS16780at 123.203 kb on + strand, within ABZR87_RS16780at 123.203 kb on + strand, within ABZR87_RS16780at 123.203 kb on + strand, within ABZR87_RS16780at 123.203 kb on + strand, within ABZR87_RS16780at 123.204 kb on - strand, within ABZR87_RS16780at 123.204 kb on - strand, within ABZR87_RS16780at 123.204 kb on - strand, within ABZR87_RS16780at 123.204 kb on - strand, within ABZR87_RS16780at 123.389 kb on - strandat 123.507 kb on + strandat 123.581 kb on + strandat 123.581 kb on + strandat 123.582 kb on - strandat 123.582 kb on - strandat 123.582 kb on - strandat 123.582 kb on - strandat 123.582 kb on - strandat 123.731 kb on + strandat 123.731 kb on + strandat 123.731 kb on + strandat 123.731 kb on + strandat 123.731 kb on + strandat 123.732 kb on - strandat 123.760 kb on + strandat 123.830 kb on + strandat 123.831 kb on - strandat 123.918 kb on + strandat 123.918 kb on + strandat 124.108 kb on + strand, within ABZR87_RS16785at 124.108 kb on + strand, within ABZR87_RS16785at 124.108 kb on + strand, within ABZR87_RS16785at 124.108 kb on + strand, within ABZR87_RS16785at 124.109 kb on - strand, within ABZR87_RS16785at 124.109 kb on - strand, within ABZR87_RS16785at 124.109 kb on - strand, within ABZR87_RS16785at 124.168 kb on + strand, within ABZR87_RS16785at 124.168 kb on + strand, within ABZR87_RS16785at 124.168 kb on + strand, within ABZR87_RS16785at 124.168 kb on + strand, within ABZR87_RS16785at 124.168 kb on + strand, within ABZR87_RS16785at 124.169 kb on - strand, within ABZR87_RS16785at 124.169 kb on - strand, within ABZR87_RS16785at 124.214 kb on - strand, within ABZR87_RS16785at 124.244 kb on + strand, within ABZR87_RS16785at 124.306 kb on + strandat 124.306 kb on + strandat 124.307 kb on - strandat 124.307 kb on - strandat 124.307 kb on - strandat 124.307 kb on - strandat 124.496 kb on + strand, within ABZR87_RS16790at 124.497 kb on - strand, within ABZR87_RS16790at 124.497 kb on - strand, within ABZR87_RS16790at 124.638 kb on - strand, within ABZR87_RS16790at 124.638 kb on - strand, within ABZR87_RS16790at 124.638 kb on - strand, within ABZR87_RS16790at 124.638 kb on - strand, within ABZR87_RS16790at 124.638 kb on - strand, within ABZR87_RS16790at 124.638 kb on - strand, within ABZR87_RS16790at 124.639 kb on + strand, within ABZR87_RS16790at 124.639 kb on + strand, within ABZR87_RS16790at 124.639 kb on + strand, within ABZR87_RS16790at 124.640 kb on - strand, within ABZR87_RS16790at 124.640 kb on - strand, within ABZR87_RS16790at 124.640 kb on - strand, within ABZR87_RS16790at 124.640 kb on - strand, within ABZR87_RS16790at 124.640 kb on - strand, within ABZR87_RS16790at 124.640 kb on - strand, within ABZR87_RS16790at 124.671 kb on - strand, within ABZR87_RS16790at 124.671 kb on - strand, within ABZR87_RS16790at 124.671 kb on - strand, within ABZR87_RS16790at 124.760 kb on + strand, within ABZR87_RS16790at 124.760 kb on + strand, within ABZR87_RS16790at 124.760 kb on + strand, within ABZR87_RS16790at 124.760 kb on + strand, within ABZR87_RS16790at 124.761 kb on - strand, within ABZR87_RS16790at 124.772 kb on + strandat 124.773 kb on - strandat 124.773 kb on - strandat 124.773 kb on - strandat 124.773 kb on - strandat 124.948 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB
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123,028 + ABZR87_RS16780 0.84 +1.2
123,028 + ABZR87_RS16780 0.84 +1.1
123,029 - ABZR87_RS16780 0.84 +0.8
123,053 + ABZR87_RS16780 0.85 -2.1
123,053 + ABZR87_RS16780 0.85 +0.2
123,053 + ABZR87_RS16780 0.85 +1.4
123,053 + ABZR87_RS16780 0.85 -2.7
123,053 + ABZR87_RS16780 0.85 -1.0
123,053 + ABZR87_RS16780 0.85 +0.9
123,053 + ABZR87_RS16780 0.85 +0.8
123,053 + ABZR87_RS16780 0.85 +0.6
123,054 - ABZR87_RS16780 0.85 -0.4
123,054 - ABZR87_RS16780 0.85 -1.1
123,054 - ABZR87_RS16780 0.85 +1.2
123,054 - ABZR87_RS16780 0.85 +0.5
123,203 + ABZR87_RS16780 0.87 -0.4
123,203 + ABZR87_RS16780 0.87 -0.5
123,203 + ABZR87_RS16780 0.87 -1.2
123,203 + ABZR87_RS16780 0.87 -1.5
123,203 + ABZR87_RS16780 0.87 +0.1
123,204 - ABZR87_RS16780 0.87 +0.0
123,204 - ABZR87_RS16780 0.87 -2.4
123,204 - ABZR87_RS16780 0.87 -0.8
123,204 - ABZR87_RS16780 0.87 -1.5
123,389 - +3.3
123,507 + -1.1
123,581 + -1.7
123,581 + -0.6
123,582 - -1.9
123,582 - +0.3
123,582 - -0.4
123,582 - -1.1
123,582 - +0.8
123,731 + +1.6
123,731 + -1.5
123,731 + -1.8
123,731 + +1.5
123,731 + -0.2
123,732 - +0.1
123,760 + +0.4
123,830 + +0.9
123,831 - +1.6
123,918 + -0.2
123,918 + +0.2
124,108 + ABZR87_RS16785 0.48 -1.9
124,108 + ABZR87_RS16785 0.48 -1.3
124,108 + ABZR87_RS16785 0.48 +1.1
124,108 + ABZR87_RS16785 0.48 -3.8
124,109 - ABZR87_RS16785 0.49 -0.6
124,109 - ABZR87_RS16785 0.49 -1.0
124,109 - ABZR87_RS16785 0.49 +2.1
124,168 + ABZR87_RS16785 0.64 -1.2
124,168 + ABZR87_RS16785 0.64 -0.0
124,168 + ABZR87_RS16785 0.64 -0.9
124,168 + ABZR87_RS16785 0.64 +2.2
124,168 + ABZR87_RS16785 0.64 +1.2
124,169 - ABZR87_RS16785 0.64 +0.4
124,169 - ABZR87_RS16785 0.64 -0.9
124,214 - ABZR87_RS16785 0.76 +0.2
124,244 + ABZR87_RS16785 0.83 +1.6
124,306 + +0.4
124,306 + -2.9
124,307 - +0.4
124,307 - -1.1
124,307 - -1.7
124,307 - -0.5
124,496 + ABZR87_RS16790 0.32 -0.0
124,497 - ABZR87_RS16790 0.32 -0.6
124,497 - ABZR87_RS16790 0.32 -0.3
124,638 - ABZR87_RS16790 0.62 -0.4
124,638 - ABZR87_RS16790 0.62 +1.5
124,638 - ABZR87_RS16790 0.62 +0.8
124,638 - ABZR87_RS16790 0.62 +0.3
124,638 - ABZR87_RS16790 0.62 +0.9
124,638 - ABZR87_RS16790 0.62 +0.4
124,639 + ABZR87_RS16790 0.62 -0.7
124,639 + ABZR87_RS16790 0.62 +0.4
124,639 + ABZR87_RS16790 0.62 -0.2
124,640 - ABZR87_RS16790 0.62 -2.8
124,640 - ABZR87_RS16790 0.62 -0.0
124,640 - ABZR87_RS16790 0.62 +1.1
124,640 - ABZR87_RS16790 0.62 +0.1
124,640 - ABZR87_RS16790 0.62 +0.2
124,640 - ABZR87_RS16790 0.62 -0.2
124,671 - ABZR87_RS16790 0.69 -2.2
124,671 - ABZR87_RS16790 0.69 -0.3
124,671 - ABZR87_RS16790 0.69 +1.0
124,760 + ABZR87_RS16790 0.87 -0.7
124,760 + ABZR87_RS16790 0.87 +1.2
124,760 + ABZR87_RS16790 0.87 +0.2
124,760 + ABZR87_RS16790 0.87 +0.6
124,761 - ABZR87_RS16790 0.88 -1.3
124,772 + +2.3
124,773 - +1.4
124,773 - +1.3
124,773 - +0.1
124,773 - -1.6
124,948 - +0.5

Or see this region's nucleotide sequence