Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS14325

Experiment: Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS14315 and ABZR87_RS14320 overlap by 4 nucleotidesABZR87_RS14320 and ABZR87_RS14325 are separated by 181 nucleotidesABZR87_RS14325 and ABZR87_RS14330 are separated by 141 nucleotidesABZR87_RS14330 and ABZR87_RS14335 are separated by 532 nucleotides ABZR87_RS14315: ABZR87_RS14315 - xanthine dehydrogenase family protein molybdopterin-binding subunit, at 3,023,016 to 3,025,313 _RS14315 ABZR87_RS14320: ABZR87_RS14320 - (2Fe-2S)-binding protein, at 3,025,310 to 3,025,777 _RS14320 ABZR87_RS14325: ABZR87_RS14325 - tRNA-Ser, at 3,025,959 to 3,026,049 _RS14325 ABZR87_RS14330: ABZR87_RS14330 - hypothetical protein, at 3,026,191 to 3,026,472 _RS14330 ABZR87_RS14335: ABZR87_RS14335 - CocE/NonD family hydrolase, at 3,027,005 to 3,029,020 _RS14335 Position (kb) 3025 3026 3027Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 3024.988 kb on + strand, within ABZR87_RS14315at 3024.988 kb on + strand, within ABZR87_RS14315at 3024.988 kb on + strand, within ABZR87_RS14315at 3024.989 kb on - strand, within ABZR87_RS14315at 3024.989 kb on - strand, within ABZR87_RS14315at 3024.989 kb on - strand, within ABZR87_RS14315at 3024.989 kb on - strand, within ABZR87_RS14315at 3025.637 kb on + strand, within ABZR87_RS14320at 3025.638 kb on - strand, within ABZR87_RS14320at 3025.638 kb on - strand, within ABZR87_RS14320at 3025.793 kb on + strandat 3025.825 kb on + strandat 3025.825 kb on + strandat 3025.826 kb on - strandat 3025.826 kb on - strandat 3025.826 kb on - strandat 3025.851 kb on + strandat 3025.852 kb on - strandat 3025.852 kb on - strandat 3025.852 kb on - strandat 3025.925 kb on + strandat 3025.926 kb on - strandat 3025.942 kb on + strandat 3026.235 kb on + strand, within ABZR87_RS14330at 3026.545 kb on + strandat 3026.545 kb on + strandat 3026.546 kb on - strandat 3026.546 kb on - strandat 3026.564 kb on + strandat 3026.565 kb on - strandat 3026.565 kb on - strandat 3026.729 kb on + strandat 3026.729 kb on + strandat 3026.733 kb on + strandat 3026.734 kb on - strandat 3026.805 kb on + strandat 3026.806 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB
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3,024,988 + ABZR87_RS14315 0.86 -3.2
3,024,988 + ABZR87_RS14315 0.86 -0.7
3,024,988 + ABZR87_RS14315 0.86 -0.2
3,024,989 - ABZR87_RS14315 0.86 +0.7
3,024,989 - ABZR87_RS14315 0.86 -1.2
3,024,989 - ABZR87_RS14315 0.86 +0.5
3,024,989 - ABZR87_RS14315 0.86 +0.5
3,025,637 + ABZR87_RS14320 0.70 +0.3
3,025,638 - ABZR87_RS14320 0.70 +0.6
3,025,638 - ABZR87_RS14320 0.70 +0.8
3,025,793 + +0.8
3,025,825 + -0.2
3,025,825 + +0.6
3,025,826 - -0.7
3,025,826 - -2.6
3,025,826 - -0.4
3,025,851 + +0.5
3,025,852 - -1.9
3,025,852 - -3.6
3,025,852 - +0.9
3,025,925 + +1.0
3,025,926 - +0.9
3,025,942 + -0.6
3,026,235 + ABZR87_RS14330 0.16 +2.6
3,026,545 + +0.6
3,026,545 + +0.7
3,026,546 - -0.8
3,026,546 - +1.3
3,026,564 + -0.2
3,026,565 - +1.6
3,026,565 - -2.8
3,026,729 + +1.2
3,026,729 + -1.1
3,026,733 + +0.2
3,026,734 - -0.8
3,026,805 + +2.6
3,026,806 - +1.1

Or see this region's nucleotide sequence