Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS14210

Experiment: Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB
2,998,599	+		ABZR87_RS14200	0.29	+1.6
2,998,737	+		ABZR87_RS14200	0.50	+0.5
2,998,737	+		ABZR87_RS14200	0.50	-0.2
2,998,738	-		ABZR87_RS14200	0.50	+0.5
2,998,738	-		ABZR87_RS14200	0.50	-1.8
2,998,738	-		ABZR87_RS14200	0.50	-0.0
2,998,756	+		ABZR87_RS14200	0.53	+1.0
2,998,756	+		ABZR87_RS14200	0.53	+0.7
2,998,756	+		ABZR87_RS14200	0.53	-0.4
2,998,756	+		ABZR87_RS14200	0.53	+1.6
2,998,757	-		ABZR87_RS14200	0.53	-0.5
2,998,757	-		ABZR87_RS14200	0.53	-0.1
2,998,757	-		ABZR87_RS14200	0.53	-2.0
2,998,772	+		ABZR87_RS14200	0.55	+1.2
2,998,773	-		ABZR87_RS14200	0.56	+0.4
2,998,773	-		ABZR87_RS14200	0.56	-2.5
2,998,773	-		ABZR87_RS14200	0.56	+0.0
2,998,796	+		ABZR87_RS14200	0.59	-0.9
2,998,797	-		ABZR87_RS14200	0.59	-0.4
2,998,903	+		ABZR87_RS14200	0.75	+0.1
2,998,903	+		ABZR87_RS14200	0.75	-1.2
2,998,903	+		ABZR87_RS14200	0.75	+0.5
2,998,961	+		ABZR87_RS14200	0.84	+6.3
2,998,961	+		ABZR87_RS14200	0.84	-3.0
2,998,961	+		ABZR87_RS14200	0.84	-0.3
2,999,063	+				+0.4
2,999,064	-				+0.3
2,999,064	-				+0.2
2,999,120	+				-1.0
2,999,174	+				+0.0
2,999,174	+				-2.0
2,999,174	+				+2.5
2,999,174	+				+0.4
2,999,174	+				+1.1
2,999,175	-				+3.1
2,999,175	-				-1.7
2,999,175	-				-1.6
2,999,266	+		ABZR87_RS14205	0.13	-0.2
2,999,266	+		ABZR87_RS14205	0.13	-1.4
2,999,267	-		ABZR87_RS14205	0.13	-1.4
2,999,326	+		ABZR87_RS14205	0.34	+0.4
2,999,506	+				-0.6
2,999,506	+				+0.5
2,999,506	+				-0.2
2,999,507	-				+1.6
2,999,507	-				-0.5
2,999,507	-				+0.6
2,999,507	-				+0.0
2,999,645	+				+1.8
2,999,645	+				+1.3
2,999,646	-				-2.3
2,999,646	-				-1.7
2,999,646	-				-1.4
2,999,646	-				+0.7
2,999,646	-				-2.3
2,999,646	-				+0.2
2,999,667	+				-1.3
2,999,667	+				-0.2
2,999,667	+				+0.5
2,999,667	+				+0.5
2,999,667	+				-3.2
2,999,667	+				+1.3
2,999,668	-				+0.7
2,999,668	-				+3.2
2,999,668	-				+0.5
2,999,708	+				-0.9
2,999,709	-				-0.2
2,999,709	-				+0.3
2,999,709	-				-0.6
2,999,822	+		ABZR87_RS14210	0.15	-0.8
3,000,117	-		ABZR87_RS14210	0.34	-1.1
3,000,135	-		ABZR87_RS14210	0.36	-0.0
3,000,135	-		ABZR87_RS14210	0.36	+0.6
3,000,162	-		ABZR87_RS14210	0.37	-3.3
3,000,162	-		ABZR87_RS14210	0.37	+0.4
3,000,174	+		ABZR87_RS14210	0.38	-1.6
3,000,227	+		ABZR87_RS14210	0.42	+1.7
3,000,227	+		ABZR87_RS14210	0.42	-0.5
3,000,227	+		ABZR87_RS14210	0.42	+0.9
3,000,248	+		ABZR87_RS14210	0.43	-0.4
3,000,248	+		ABZR87_RS14210	0.43	-2.8
3,000,248	+		ABZR87_RS14210	0.43	-0.4
3,000,249	-		ABZR87_RS14210	0.43	-0.3
3,000,302	+		ABZR87_RS14210	0.47	+0.4
3,000,308	+		ABZR87_RS14210	0.47	-2.2
3,000,308	+		ABZR87_RS14210	0.47	+0.9
3,000,308	+		ABZR87_RS14210	0.47	+1.8
3,000,309	-		ABZR87_RS14210	0.47	-1.4
3,000,309	-		ABZR87_RS14210	0.47	-1.5
3,000,309	-		ABZR87_RS14210	0.47	+0.6
3,000,386	+		ABZR87_RS14210	0.52	-0.5
3,000,386	+		ABZR87_RS14210	0.52	-1.0
3,000,386	+		ABZR87_RS14210	0.52	-0.3
3,000,386	+		ABZR87_RS14210	0.52	+1.7
3,000,387	-		ABZR87_RS14210	0.52	+0.1
3,000,387	-		ABZR87_RS14210	0.52	-0.5
3,000,516	-		ABZR87_RS14210	0.61	-2.1
3,000,516	-		ABZR87_RS14210	0.61	-2.9
3,000,593	+		ABZR87_RS14210	0.66	-0.6
3,000,593	+		ABZR87_RS14210	0.66	-1.0
3,000,593	+		ABZR87_RS14210	0.66	-1.1
3,000,594	-		ABZR87_RS14210	0.66	+2.9
3,000,594	-		ABZR87_RS14210	0.66	-2.8
3,000,594	-		ABZR87_RS14210	0.66	-0.1
3,000,625	+		ABZR87_RS14210	0.68	+0.1
3,000,625	+		ABZR87_RS14210	0.68	-1.0
3,000,625	+		ABZR87_RS14210	0.68	-0.8
3,000,625	+		ABZR87_RS14210	0.68	+0.4
3,000,626	-		ABZR87_RS14210	0.68	-0.6
3,000,647	+		ABZR87_RS14210	0.69	+0.3
3,000,671	+		ABZR87_RS14210	0.71	-0.4
3,000,671	+		ABZR87_RS14210	0.71	+0.4
3,000,671	+		ABZR87_RS14210	0.71	-1.2
3,000,671	+		ABZR87_RS14210	0.71	-0.8
3,000,672	-		ABZR87_RS14210	0.71	-0.3
3,000,672	-		ABZR87_RS14210	0.71	-2.7
3,000,672	-		ABZR87_RS14210	0.71	+5.2
3,000,672	-		ABZR87_RS14210	0.71	-0.4
3,000,672	-		ABZR87_RS14210	0.71	+0.3
3,000,672	-		ABZR87_RS14210	0.71	+0.8
3,000,672	-		ABZR87_RS14210	0.71	+0.3
3,000,692	+		ABZR87_RS14210	0.72	+2.5
3,000,693	-		ABZR87_RS14210	0.72	-1.1
3,000,734	+		ABZR87_RS14210	0.75	-0.3
3,000,734	+		ABZR87_RS14210	0.75	-0.4
3,000,734	+		ABZR87_RS14210	0.75	+1.5
3,000,734	+		ABZR87_RS14210	0.75	-0.3
3,000,734	+		ABZR87_RS14210	0.75	-0.2
3,000,734	+		ABZR87_RS14210	0.75	-0.5
3,000,734	+		ABZR87_RS14210	0.75	-2.5
3,000,735	-		ABZR87_RS14210	0.75	+1.8
3,000,735	-		ABZR87_RS14210	0.75	-1.7
3,000,735	-		ABZR87_RS14210	0.75	-0.2
3,000,735	-		ABZR87_RS14210	0.75	-0.2
3,000,735	-		ABZR87_RS14210	0.75	+0.9
3,000,764	+		ABZR87_RS14210	0.77	-2.1
3,000,764	+		ABZR87_RS14210	0.77	-2.0
3,000,764	+		ABZR87_RS14210	0.77	+1.0
3,000,764	+		ABZR87_RS14210	0.77	-0.1
3,000,765	-		ABZR87_RS14210	0.77	+0.3
3,000,765	-		ABZR87_RS14210	0.77	-2.0
3,000,821	+		ABZR87_RS14210	0.81	-1.9
3,000,822	-		ABZR87_RS14210	0.81	-1.1
3,000,917	+		ABZR87_RS14210	0.87	-1.5
3,000,932	+		ABZR87_RS14210	0.88	-0.4
3,000,932	+		ABZR87_RS14210	0.88	+0.6
3,000,960	-				-0.3
3,001,007	+				-0.4
3,001,007	+				-1.2
3,001,007	+				+0.9
3,001,008	-				+0.2
3,001,056	-				+0.5
3,001,092	+				+1.8
3,001,093	-				-3.1
3,001,093	-				-0.1
3,001,093	-				+1.6
3,001,093	-				-0.8
3,001,096	+				-1.2
3,001,096	+				-0.8
3,001,096	+				-1.9
3,001,096	+				+0.4
3,001,096	+				-1.9
3,001,096	+				-0.7
3,001,096	+				-2.6
3,001,097	-				+1.3
3,001,097	-				+1.1
3,001,100	+				-1.0
3,001,100	+				-1.9
3,001,100	+				-1.1
3,001,100	+				+0.4
3,001,101	-				+0.3
3,001,101	-				+1.5
3,001,101	-				-0.1
3,001,262	+				-0.5
3,001,263	-				-0.2
3,001,323	+				+0.9
3,001,323	+				-2.1
3,001,323	+				-1.2
3,001,323	+				-1.6
3,001,323	+				+1.1
3,001,323	+				+0.5
3,001,323	+				-0.1
3,001,323	+				+0.3
3,001,323	+				+1.4
3,001,323	+				-2.2
3,001,323	+				-0.4
3,001,324	-				+1.4
3,001,324	-				+1.1
3,001,324	-				+1.0
3,001,324	-				-0.4
3,001,324	-				+1.5
3,001,328	+				+2.5
3,001,328	+				+3.6
3,001,329	-				-2.2
3,001,329	-				-1.2
3,001,374	-		ABZR87_RS14215	0.12	-3.1
3,001,374	-		ABZR87_RS14215	0.12	-0.7
3,001,379	+		ABZR87_RS14215	0.12	-2.3
3,001,379	+		ABZR87_RS14215	0.12	+1.6
3,001,379	+		ABZR87_RS14215	0.12	+7.9
3,001,380	-		ABZR87_RS14215	0.13	+2.5
3,001,380	-		ABZR87_RS14215	0.13	-1.3
3,001,380	-		ABZR87_RS14215	0.13	-0.2
3,001,380	-		ABZR87_RS14215	0.13	-0.3
3,001,382	+		ABZR87_RS14215	0.13	+0.4
3,001,383	-		ABZR87_RS14215	0.13	+0.5
3,001,383	-		ABZR87_RS14215	0.13	-0.2
3,001,383	-		ABZR87_RS14215	0.13	-1.7
3,001,475	+		ABZR87_RS14215	0.20	-1.4
3,001,475	+		ABZR87_RS14215	0.20	-1.9
3,001,475	+		ABZR87_RS14215	0.20	-0.7
3,001,475	+		ABZR87_RS14215	0.20	-2.1
3,001,475	+		ABZR87_RS14215	0.20	-0.2
3,001,475	+		ABZR87_RS14215	0.20	-0.0
3,001,476	-		ABZR87_RS14215	0.20	-0.6
3,001,476	-		ABZR87_RS14215	0.20	-0.2
3,001,476	-		ABZR87_RS14215	0.20	-2.5
3,001,476	-		ABZR87_RS14215	0.20	-0.7
3,001,476	-		ABZR87_RS14215	0.20	-3.0
3,001,476	-		ABZR87_RS14215	0.20	-0.3
3,001,476	-		ABZR87_RS14215	0.20	+0.7
3,001,476	-		ABZR87_RS14215	0.20	+1.8
3,001,476	-		ABZR87_RS14215	0.20	-1.4
3,001,476	-		ABZR87_RS14215	0.20	-0.6
3,001,643	+		ABZR87_RS14215	0.33	-1.4
3,001,643	+		ABZR87_RS14215	0.33	+0.7
3,001,643	+		ABZR87_RS14215	0.33	+0.2
3,001,643	+		ABZR87_RS14215	0.33	+3.2
3,001,644	-		ABZR87_RS14215	0.33	-0.6
3,001,644	-		ABZR87_RS14215	0.33	-0.1
3,001,644	-		ABZR87_RS14215	0.33	+1.4
3,001,664	+		ABZR87_RS14215	0.35	-0.2
3,001,664	+		ABZR87_RS14215	0.35	-1.8
3,001,664	+		ABZR87_RS14215	0.35	+1.2
3,001,664	+		ABZR87_RS14215	0.35	-0.9
3,001,664	+		ABZR87_RS14215	0.35	-1.2
3,001,664	+		ABZR87_RS14215	0.35	-0.7
3,001,664	+		ABZR87_RS14215	0.35	-1.3
3,001,664	+		ABZR87_RS14215	0.35	-0.8
3,001,665	-		ABZR87_RS14215	0.35	-0.8
3,001,665	-		ABZR87_RS14215	0.35	-0.2
3,001,873	+		ABZR87_RS14215	0.52	-1.7
3,001,873	+		ABZR87_RS14215	0.52	-1.4
3,001,874	-		ABZR87_RS14215	0.52	-1.8
3,001,880	+		ABZR87_RS14215	0.52	+0.8
3,001,880	+		ABZR87_RS14215	0.52	-0.4
3,001,881	-		ABZR87_RS14215	0.52	+0.1
3,001,910	+		ABZR87_RS14215	0.54	-2.9
3,001,911	-		ABZR87_RS14215	0.55	+0.7
3,001,911	-		ABZR87_RS14215	0.55	+3.2
3,001,944	-		ABZR87_RS14215	0.57	+2.2