Experiment: Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS11835 and ABZR87_RS11840 are separated by 176 nucleotides ABZR87_RS11840 and ABZR87_RS11845 are separated by 52 nucleotides ABZR87_RS11845 and ABZR87_RS11850 are separated by 3 nucleotides ABZR87_RS11850 and ABZR87_RS11855 are separated by 11 nucleotides
ABZR87_RS11835: ABZR87_RS11835 - UMP kinase, at 2,514,132 to 2,514,842
_RS11835
ABZR87_RS11840: ABZR87_RS11840 - ribosome recycling factor, at 2,515,019 to 2,515,579
_RS11840
ABZR87_RS11845: ABZR87_RS11845 - polyprenyl diphosphate synthase, at 2,515,632 to 2,516,408
_RS11845
ABZR87_RS11850: ABZR87_RS11850 - phosphatidate cytidylyltransferase, at 2,516,412 to 2,517,230
_RS11850
ABZR87_RS11855: ABZR87_RS11855 - 1-deoxy-D-xylulose-5-phosphate reductoisomerase, at 2,517,242 to 2,518,432
_RS11855
Position (kb)
2515
2516
2517 Strain fitness (log2 ratio)
-2
-1
0
1 at 2514.877 kb on + strand at 2514.925 kb on + strand at 2514.925 kb on + strand at 2515.577 kb on + strand at 2515.577 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB remove 2,514,877 + -1.9 2,514,925 + +0.9 2,514,925 + +1.5 2,515,577 + -2.4 2,515,577 + -0.6
Or see this region's nucleotide sequence