Experiment: Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS09145 and ABZR87_RS09150 are separated by 192 nucleotides ABZR87_RS09150 and ABZR87_RS09155 are separated by 206 nucleotides ABZR87_RS09155 and ABZR87_RS09160 overlap by 1 nucleotides
ABZR87_RS09145: ABZR87_RS09145 - cyclopropane-fatty-acyl-phospholipid synthase family protein, at 1,934,844 to 1,936,064
_RS09145
ABZR87_RS09150: ABZR87_RS09150 - pyridoxamine 5'-phosphate oxidase, at 1,936,257 to 1,936,895
_RS09150
ABZR87_RS09155: ABZR87_RS09155 - sugar dehydrogenase complex small subunit, at 1,937,102 to 1,937,587
_RS09155
ABZR87_RS09160: ABZR87_RS09160 - GMC family oxidoreductase, at 1,937,587 to 1,939,197
_RS09160
Position (kb) 1936
1937 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5
6
7
8
9
10 at 1935.287 kb on - strand, within ABZR87_RS09145 at 1935.368 kb on - strand, within ABZR87_RS09145 at 1935.436 kb on + strand, within ABZR87_RS09145 at 1935.436 kb on + strand, within ABZR87_RS09145 at 1935.437 kb on - strand, within ABZR87_RS09145 at 1935.437 kb on - strand, within ABZR87_RS09145 at 1935.437 kb on - strand, within ABZR87_RS09145 at 1935.626 kb on - strand, within ABZR87_RS09145 at 1935.637 kb on + strand, within ABZR87_RS09145 at 1935.637 kb on + strand, within ABZR87_RS09145 at 1935.637 kb on + strand, within ABZR87_RS09145 at 1935.638 kb on - strand, within ABZR87_RS09145 at 1935.638 kb on - strand, within ABZR87_RS09145 at 1935.667 kb on + strand, within ABZR87_RS09145 at 1935.667 kb on + strand, within ABZR87_RS09145 at 1935.667 kb on + strand, within ABZR87_RS09145 at 1935.667 kb on + strand, within ABZR87_RS09145 at 1935.667 kb on + strand, within ABZR87_RS09145 at 1935.667 kb on + strand, within ABZR87_RS09145 at 1935.668 kb on - strand, within ABZR87_RS09145 at 1935.689 kb on - strand, within ABZR87_RS09145 at 1935.689 kb on - strand, within ABZR87_RS09145 at 1935.695 kb on - strand, within ABZR87_RS09145 at 1935.797 kb on - strand, within ABZR87_RS09145 at 1935.853 kb on + strand, within ABZR87_RS09145 at 1935.853 kb on + strand, within ABZR87_RS09145 at 1935.853 kb on + strand, within ABZR87_RS09145 at 1935.853 kb on + strand, within ABZR87_RS09145 at 1935.853 kb on + strand, within ABZR87_RS09145 at 1935.854 kb on - strand, within ABZR87_RS09145 at 1935.854 kb on - strand, within ABZR87_RS09145 at 1935.854 kb on - strand, within ABZR87_RS09145 at 1935.854 kb on - strand, within ABZR87_RS09145 at 1935.854 kb on - strand, within ABZR87_RS09145 at 1935.958 kb on + strand at 1935.959 kb on - strand at 1935.987 kb on + strand at 1935.987 kb on + strand at 1935.987 kb on + strand at 1935.987 kb on + strand at 1935.987 kb on + strand at 1935.988 kb on - strand at 1935.988 kb on - strand at 1935.988 kb on - strand at 1936.085 kb on + strand at 1936.085 kb on + strand at 1936.085 kb on + strand at 1936.086 kb on - strand at 1936.086 kb on - strand at 1936.086 kb on - strand at 1936.131 kb on + strand at 1936.132 kb on - strand at 1936.132 kb on - strand at 1936.132 kb on - strand at 1936.136 kb on + strand at 1936.136 kb on + strand at 1936.136 kb on + strand at 1936.137 kb on - strand at 1936.170 kb on + strand at 1936.171 kb on - strand at 1936.171 kb on - strand at 1936.171 kb on - strand at 1936.235 kb on + strand at 1936.240 kb on + strand at 1936.240 kb on + strand at 1936.240 kb on + strand at 1936.240 kb on + strand at 1936.240 kb on + strand at 1936.240 kb on + strand at 1936.241 kb on - strand at 1936.241 kb on - strand at 1936.241 kb on - strand at 1936.241 kb on - strand at 1936.258 kb on + strand at 1936.865 kb on - strand at 1936.930 kb on + strand at 1936.931 kb on - strand at 1936.931 kb on - strand at 1936.931 kb on - strand at 1936.932 kb on + strand at 1936.932 kb on + strand at 1936.932 kb on + strand at 1936.932 kb on + strand at 1936.933 kb on - strand at 1936.933 kb on - strand at 1936.954 kb on - strand at 1937.028 kb on + strand at 1937.028 kb on + strand at 1937.028 kb on + strand at 1937.028 kb on + strand at 1937.029 kb on - strand at 1937.030 kb on + strand at 1937.030 kb on + strand at 1937.030 kb on + strand at 1937.038 kb on - strand at 1937.444 kb on + strand, within ABZR87_RS09155 at 1937.444 kb on + strand, within ABZR87_RS09155 at 1937.473 kb on + strand, within ABZR87_RS09155 at 1937.473 kb on + strand, within ABZR87_RS09155 at 1937.473 kb on + strand, within ABZR87_RS09155 at 1937.473 kb on + strand, within ABZR87_RS09155 at 1937.474 kb on - strand, within ABZR87_RS09155 at 1937.474 kb on - strand, within ABZR87_RS09155 at 1937.474 kb on - strand, within ABZR87_RS09155 at 1937.474 kb on - strand, within ABZR87_RS09155 at 1937.477 kb on + strand, within ABZR87_RS09155 at 1937.495 kb on + strand, within ABZR87_RS09155 at 1937.495 kb on + strand, within ABZR87_RS09155 at 1937.495 kb on + strand, within ABZR87_RS09155 at 1937.495 kb on + strand, within ABZR87_RS09155 at 1937.495 kb on + strand, within ABZR87_RS09155 at 1937.496 kb on - strand, within ABZR87_RS09155 at 1937.496 kb on - strand, within ABZR87_RS09155 at 1937.496 kb on - strand, within ABZR87_RS09155 at 1937.531 kb on + strand, within ABZR87_RS09155 at 1937.531 kb on + strand, within ABZR87_RS09155 at 1937.531 kb on + strand, within ABZR87_RS09155 at 1937.531 kb on + strand, within ABZR87_RS09155 at 1937.532 kb on - strand, within ABZR87_RS09155 at 1937.532 kb on - strand, within ABZR87_RS09155 at 1937.532 kb on - strand, within ABZR87_RS09155 at 1937.532 kb on - strand, within ABZR87_RS09155 at 1937.532 kb on - strand, within ABZR87_RS09155 at 1937.774 kb on - strand, within ABZR87_RS09160 at 1937.806 kb on + strand, within ABZR87_RS09160 at 1937.806 kb on + strand, within ABZR87_RS09160 at 1937.807 kb on - strand, within ABZR87_RS09160 at 1937.824 kb on + strand, within ABZR87_RS09160 at 1937.824 kb on + strand, within ABZR87_RS09160 at 1937.824 kb on + strand, within ABZR87_RS09160 at 1937.824 kb on + strand, within ABZR87_RS09160 at 1937.824 kb on + strand, within ABZR87_RS09160 at 1937.825 kb on - strand, within ABZR87_RS09160 at 1937.825 kb on - strand, within ABZR87_RS09160 at 1937.825 kb on - strand, within ABZR87_RS09160 at 1937.863 kb on + strand, within ABZR87_RS09160 at 1937.863 kb on + strand, within ABZR87_RS09160 at 1937.864 kb on - strand, within ABZR87_RS09160 at 1937.864 kb on - strand, within ABZR87_RS09160 at 1937.864 kb on - strand, within ABZR87_RS09160 at 1937.864 kb on - strand, within ABZR87_RS09160 at 1937.864 kb on - strand, within ABZR87_RS09160 at 1937.876 kb on + strand, within ABZR87_RS09160
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB remove 1,935,287 - ABZR87_RS09145 0.36 +0.4 1,935,368 - ABZR87_RS09145 0.43 +0.2 1,935,436 + ABZR87_RS09145 0.48 +0.7 1,935,436 + ABZR87_RS09145 0.48 -0.5 1,935,437 - ABZR87_RS09145 0.49 +1.3 1,935,437 - ABZR87_RS09145 0.49 -0.1 1,935,437 - ABZR87_RS09145 0.49 +0.4 1,935,626 - ABZR87_RS09145 0.64 -0.3 1,935,637 + ABZR87_RS09145 0.65 -0.6 1,935,637 + ABZR87_RS09145 0.65 +0.2 1,935,637 + ABZR87_RS09145 0.65 +1.7 1,935,638 - ABZR87_RS09145 0.65 +1.6 1,935,638 - ABZR87_RS09145 0.65 +0.3 1,935,667 + ABZR87_RS09145 0.67 -0.3 1,935,667 + ABZR87_RS09145 0.67 -0.7 1,935,667 + ABZR87_RS09145 0.67 +0.1 1,935,667 + ABZR87_RS09145 0.67 -2.3 1,935,667 + ABZR87_RS09145 0.67 -0.5 1,935,667 + ABZR87_RS09145 0.67 +0.2 1,935,668 - ABZR87_RS09145 0.67 -0.8 1,935,689 - ABZR87_RS09145 0.69 -1.0 1,935,689 - ABZR87_RS09145 0.69 +0.7 1,935,695 - ABZR87_RS09145 0.70 -2.6 1,935,797 - ABZR87_RS09145 0.78 +0.1 1,935,853 + ABZR87_RS09145 0.83 +0.7 1,935,853 + ABZR87_RS09145 0.83 +1.4 1,935,853 + ABZR87_RS09145 0.83 -0.0 1,935,853 + ABZR87_RS09145 0.83 -1.6 1,935,853 + ABZR87_RS09145 0.83 -2.7 1,935,854 - ABZR87_RS09145 0.83 +0.1 1,935,854 - ABZR87_RS09145 0.83 +1.7 1,935,854 - ABZR87_RS09145 0.83 +0.6 1,935,854 - ABZR87_RS09145 0.83 +2.3 1,935,854 - ABZR87_RS09145 0.83 -0.5 1,935,958 + +1.6 1,935,959 - +0.7 1,935,987 + +2.1 1,935,987 + +0.7 1,935,987 + -0.8 1,935,987 + -1.0 1,935,987 + -0.5 1,935,988 - +0.2 1,935,988 - -1.2 1,935,988 - +0.4 1,936,085 + +0.8 1,936,085 + +0.7 1,936,085 + +2.2 1,936,086 - +0.3 1,936,086 - -2.8 1,936,086 - +0.7 1,936,131 + +1.2 1,936,132 - -0.7 1,936,132 - -0.5 1,936,132 - +0.5 1,936,136 + +0.5 1,936,136 + -0.6 1,936,136 + -0.1 1,936,137 - -0.2 1,936,170 + +0.9 1,936,171 - +0.7 1,936,171 - -0.7 1,936,171 - -0.8 1,936,235 + -3.1 1,936,240 + -0.4 1,936,240 + +0.4 1,936,240 + -1.6 1,936,240 + +0.3 1,936,240 + -0.6 1,936,240 + +1.5 1,936,241 - -2.7 1,936,241 - -1.0 1,936,241 - +0.5 1,936,241 - +0.8 1,936,258 + +0.1 1,936,865 - +3.3 1,936,930 + -0.1 1,936,931 - -0.7 1,936,931 - +0.3 1,936,931 - +0.6 1,936,932 + +0.4 1,936,932 + +0.9 1,936,932 + +1.3 1,936,932 + -0.3 1,936,933 - -1.4 1,936,933 - -0.3 1,936,954 - -2.2 1,937,028 + +0.4 1,937,028 + +0.6 1,937,028 + +0.5 1,937,028 + -0.5 1,937,029 - +1.4 1,937,030 + -1.6 1,937,030 + +0.9 1,937,030 + -1.1 1,937,038 - -1.8 1,937,444 + ABZR87_RS09155 0.70 +1.4 1,937,444 + ABZR87_RS09155 0.70 -1.4 1,937,473 + ABZR87_RS09155 0.76 -2.0 1,937,473 + ABZR87_RS09155 0.76 -1.5 1,937,473 + ABZR87_RS09155 0.76 +0.9 1,937,473 + ABZR87_RS09155 0.76 -0.0 1,937,474 - ABZR87_RS09155 0.77 +0.6 1,937,474 - ABZR87_RS09155 0.77 +0.8 1,937,474 - ABZR87_RS09155 0.77 -2.7 1,937,474 - ABZR87_RS09155 0.77 -0.0 1,937,477 + ABZR87_RS09155 0.77 +1.0 1,937,495 + ABZR87_RS09155 0.81 -1.3 1,937,495 + ABZR87_RS09155 0.81 +10.4 1,937,495 + ABZR87_RS09155 0.81 -0.9 1,937,495 + ABZR87_RS09155 0.81 +1.7 1,937,495 + ABZR87_RS09155 0.81 -1.2 1,937,496 - ABZR87_RS09155 0.81 -0.7 1,937,496 - ABZR87_RS09155 0.81 -0.8 1,937,496 - ABZR87_RS09155 0.81 +1.7 1,937,531 + ABZR87_RS09155 0.88 -1.7 1,937,531 + ABZR87_RS09155 0.88 -0.5 1,937,531 + ABZR87_RS09155 0.88 -0.0 1,937,531 + ABZR87_RS09155 0.88 -1.0 1,937,532 - ABZR87_RS09155 0.88 -1.2 1,937,532 - ABZR87_RS09155 0.88 -2.5 1,937,532 - ABZR87_RS09155 0.88 +0.6 1,937,532 - ABZR87_RS09155 0.88 +1.6 1,937,532 - ABZR87_RS09155 0.88 -1.1 1,937,774 - ABZR87_RS09160 0.12 -0.3 1,937,806 + ABZR87_RS09160 0.14 +0.8 1,937,806 + ABZR87_RS09160 0.14 +0.3 1,937,807 - ABZR87_RS09160 0.14 -0.7 1,937,824 + ABZR87_RS09160 0.15 -0.1 1,937,824 + ABZR87_RS09160 0.15 +0.3 1,937,824 + ABZR87_RS09160 0.15 +1.4 1,937,824 + ABZR87_RS09160 0.15 -1.9 1,937,824 + ABZR87_RS09160 0.15 -0.6 1,937,825 - ABZR87_RS09160 0.15 -0.1 1,937,825 - ABZR87_RS09160 0.15 -2.1 1,937,825 - ABZR87_RS09160 0.15 -0.4 1,937,863 + ABZR87_RS09160 0.17 +1.4 1,937,863 + ABZR87_RS09160 0.17 +1.6 1,937,864 - ABZR87_RS09160 0.17 -2.1 1,937,864 - ABZR87_RS09160 0.17 -1.1 1,937,864 - ABZR87_RS09160 0.17 +0.3 1,937,864 - ABZR87_RS09160 0.17 +0.7 1,937,864 - ABZR87_RS09160 0.17 +0.3 1,937,876 + ABZR87_RS09160 0.18 -1.1
Or see this region's nucleotide sequence