Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS08690

Experiment: Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB
1,845,677	+		ABZR87_RS08685	0.18	+0.7
1,845,736	+		ABZR87_RS08685	0.23	-1.0
1,845,737	-		ABZR87_RS08685	0.23	-0.0
1,845,737	-		ABZR87_RS08685	0.23	+1.4
1,845,737	-		ABZR87_RS08685	0.23	-1.5
1,845,737	-		ABZR87_RS08685	0.23	+0.2
1,845,742	+		ABZR87_RS08685	0.23	-0.9
1,845,746	+		ABZR87_RS08685	0.24	-1.9
1,845,746	+		ABZR87_RS08685	0.24	-1.8
1,845,755	-		ABZR87_RS08685	0.24	-1.8
1,845,818	+		ABZR87_RS08685	0.29	-0.9
1,845,818	+		ABZR87_RS08685	0.29	-1.6
1,845,819	-		ABZR87_RS08685	0.30	+1.7
1,845,853	+		ABZR87_RS08685	0.32	+0.1
1,845,854	-		ABZR87_RS08685	0.32	-2.3
1,845,936	+		ABZR87_RS08685	0.39	+1.5
1,845,936	+		ABZR87_RS08685	0.39	-0.1
1,846,005	+		ABZR87_RS08685	0.45	-1.6
1,846,005	+		ABZR87_RS08685	0.45	-0.1
1,846,005	+		ABZR87_RS08685	0.45	+0.3
1,846,005	+		ABZR87_RS08685	0.45	-3.0
1,846,005	+		ABZR87_RS08685	0.45	-0.2
1,846,005	+		ABZR87_RS08685	0.45	-0.8
1,846,005	+		ABZR87_RS08685	0.45	-0.7
1,846,005	+		ABZR87_RS08685	0.45	-0.5
1,846,006	-		ABZR87_RS08685	0.45	-1.3
1,846,006	-		ABZR87_RS08685	0.45	+2.0
1,846,006	-		ABZR87_RS08685	0.45	+0.7
1,846,018	-		ABZR87_RS08685	0.46	+0.3
1,846,018	-		ABZR87_RS08685	0.46	-1.9
1,846,018	-		ABZR87_RS08685	0.46	-1.0
1,846,018	-		ABZR87_RS08685	0.46	-0.6
1,846,150	+		ABZR87_RS08685	0.57	+1.1
1,846,150	+		ABZR87_RS08685	0.57	+0.6
1,846,150	+		ABZR87_RS08685	0.57	-0.1
1,846,150	+		ABZR87_RS08685	0.57	-2.1
1,846,150	+		ABZR87_RS08685	0.57	+2.8
1,846,151	-		ABZR87_RS08685	0.57	+0.4
1,846,151	-		ABZR87_RS08685	0.57	+0.5
1,846,151	-		ABZR87_RS08685	0.57	+1.2
1,846,151	-		ABZR87_RS08685	0.57	-1.5
1,846,151	-		ABZR87_RS08685	0.57	-0.1
1,846,151	-		ABZR87_RS08685	0.57	+0.8
1,846,223	+		ABZR87_RS08685	0.63	-0.5
1,846,223	+		ABZR87_RS08685	0.63	+1.1
1,846,223	+		ABZR87_RS08685	0.63	-2.7
1,846,233	+		ABZR87_RS08685	0.64	+0.3
1,846,233	+		ABZR87_RS08685	0.64	+2.0
1,846,234	-		ABZR87_RS08685	0.64	-1.3
1,846,234	-		ABZR87_RS08685	0.64	+1.2
1,846,234	-		ABZR87_RS08685	0.64	-0.3
1,846,234	-		ABZR87_RS08685	0.64	+0.3
1,846,258	-		ABZR87_RS08685	0.66	+0.9
1,846,258	-		ABZR87_RS08685	0.66	-2.8
1,846,355	+		ABZR87_RS08685	0.74	+1.4
1,846,355	+		ABZR87_RS08685	0.74	+0.2
1,846,356	-		ABZR87_RS08685	0.74	-1.0
1,846,356	-		ABZR87_RS08685	0.74	+0.9
1,846,407	+		ABZR87_RS08685	0.78	+0.7
1,846,407	+		ABZR87_RS08685	0.78	-0.5
1,846,411	+		ABZR87_RS08685	0.78	-0.6
1,846,411	+		ABZR87_RS08685	0.78	+1.0
1,846,411	+		ABZR87_RS08685	0.78	-1.7
1,846,411	+		ABZR87_RS08685	0.78	-1.1
1,846,411	+		ABZR87_RS08685	0.78	-2.9
1,846,411	+		ABZR87_RS08685	0.78	-0.7
1,846,412	-		ABZR87_RS08685	0.78	-0.3
1,846,412	-		ABZR87_RS08685	0.78	-0.0
1,846,412	-		ABZR87_RS08685	0.78	+0.4
1,846,416	+		ABZR87_RS08685	0.79	+0.0
1,846,416	+		ABZR87_RS08685	0.79	-0.4
1,846,417	-		ABZR87_RS08685	0.79	-0.7
1,846,417	-		ABZR87_RS08685	0.79	+0.4
1,846,417	-		ABZR87_RS08685	0.79	-2.1
1,846,422	+		ABZR87_RS08685	0.79	+0.6
1,846,422	+		ABZR87_RS08685	0.79	-2.4
1,846,422	+		ABZR87_RS08685	0.79	+3.5
1,846,423	-		ABZR87_RS08685	0.79	-1.7
1,846,423	-		ABZR87_RS08685	0.79	+0.9
1,846,423	-		ABZR87_RS08685	0.79	+1.2
1,846,423	-		ABZR87_RS08685	0.79	+0.8
1,846,435	+		ABZR87_RS08685	0.80	-3.1
1,846,435	+		ABZR87_RS08685	0.80	-1.8
1,846,436	-		ABZR87_RS08685	0.80	-1.3
1,846,436	-		ABZR87_RS08685	0.80	+0.5
1,846,436	-		ABZR87_RS08685	0.80	-0.1
1,846,452	+		ABZR87_RS08685	0.82	-0.1
1,846,453	-		ABZR87_RS08685	0.82	-0.8
1,846,534	+		ABZR87_RS08685	0.88	-0.5
1,846,534	+		ABZR87_RS08685	0.88	+0.8
1,846,535	-		ABZR87_RS08685	0.88	-2.5
1,846,535	-		ABZR87_RS08685	0.88	-1.2
1,846,535	-		ABZR87_RS08685	0.88	-1.3
1,846,570	+				-1.0
1,846,571	-				+1.0
1,846,571	-				-1.4
1,846,573	+				-0.0
1,846,573	+				+0.2
1,846,573	+				-1.1
1,846,573	+				-2.7
1,846,627	+				+0.5
1,846,628	-				-1.0
1,846,686	+				-2.7
1,846,687	-				-2.0
1,846,702	+				-0.1
1,846,703	-				-0.9
1,846,804	+		ABZR87_RS08690	0.13	-0.4
1,846,804	+		ABZR87_RS08690	0.13	-2.3
1,846,804	+		ABZR87_RS08690	0.13	-1.1
1,846,805	-		ABZR87_RS08690	0.13	-1.2
1,846,805	-		ABZR87_RS08690	0.13	-0.5
1,846,805	-		ABZR87_RS08690	0.13	-1.0
1,846,811	+		ABZR87_RS08690	0.13	-0.9
1,846,811	+		ABZR87_RS08690	0.13	-3.2
1,846,812	-		ABZR87_RS08690	0.13	+0.4
1,846,822	+		ABZR87_RS08690	0.14	+0.6
1,846,822	+		ABZR87_RS08690	0.14	-1.3
1,846,835	+		ABZR87_RS08690	0.16	-0.7
1,846,836	-		ABZR87_RS08690	0.16	+0.4
1,846,836	-		ABZR87_RS08690	0.16	-1.7
1,846,836	-		ABZR87_RS08690	0.16	-1.9
1,846,866	+		ABZR87_RS08690	0.19	-1.6
1,846,866	+		ABZR87_RS08690	0.19	-0.5
1,846,866	+		ABZR87_RS08690	0.19	-3.2
1,846,866	+		ABZR87_RS08690	0.19	-2.0
1,846,866	+		ABZR87_RS08690	0.19	+0.1
1,846,866	+		ABZR87_RS08690	0.19	-1.5
1,846,866	+		ABZR87_RS08690	0.19	-0.9
1,846,867	-		ABZR87_RS08690	0.19	-1.6
1,846,867	-		ABZR87_RS08690	0.19	+2.0
1,846,867	-		ABZR87_RS08690	0.19	-0.4
1,846,892	+		ABZR87_RS08690	0.21	-1.9
1,846,892	+		ABZR87_RS08690	0.21	-2.0
1,846,892	+		ABZR87_RS08690	0.21	-0.7
1,846,892	+		ABZR87_RS08690	0.21	-0.4
1,846,892	+		ABZR87_RS08690	0.21	-1.2
1,846,893	-		ABZR87_RS08690	0.21	-0.6
1,846,893	-		ABZR87_RS08690	0.21	-0.3
1,846,893	-		ABZR87_RS08690	0.21	-0.8
1,846,893	-		ABZR87_RS08690	0.21	-2.3
1,846,893	-		ABZR87_RS08690	0.21	-2.5
1,846,893	-		ABZR87_RS08690	0.21	-0.0
1,846,893	-		ABZR87_RS08690	0.21	-2.7
1,846,893	-		ABZR87_RS08690	0.21	-1.9
1,846,893	-		ABZR87_RS08690	0.21	-0.8
1,846,898	+		ABZR87_RS08690	0.22	-0.5
1,846,898	+		ABZR87_RS08690	0.22	+1.2
1,846,898	+		ABZR87_RS08690	0.22	+1.1
1,846,899	-		ABZR87_RS08690	0.22	-0.7
1,846,899	-		ABZR87_RS08690	0.22	-0.7
1,846,899	-		ABZR87_RS08690	0.22	-1.6
1,846,968	+		ABZR87_RS08690	0.28	+0.6
1,846,969	-		ABZR87_RS08690	0.29	-1.9
1,846,969	-		ABZR87_RS08690	0.29	-1.8
1,847,051	+		ABZR87_RS08690	0.36	+0.1
1,847,052	-		ABZR87_RS08690	0.37	+0.4
1,847,052	-		ABZR87_RS08690	0.37	-2.3
1,847,117	-		ABZR87_RS08690	0.43	-3.1
1,847,121	+		ABZR87_RS08690	0.43	-1.4
1,847,121	+		ABZR87_RS08690	0.43	+0.2
1,847,121	+		ABZR87_RS08690	0.43	-2.2
1,847,121	+		ABZR87_RS08690	0.43	-1.9
1,847,121	+		ABZR87_RS08690	0.43	-0.5
1,847,121	+		ABZR87_RS08690	0.43	-0.4
1,847,121	+		ABZR87_RS08690	0.43	-1.8
1,847,122	-		ABZR87_RS08690	0.43	-1.4
1,847,122	-		ABZR87_RS08690	0.43	-2.2
1,847,122	-		ABZR87_RS08690	0.43	-1.3
1,847,122	-		ABZR87_RS08690	0.43	-0.4
1,847,122	-		ABZR87_RS08690	0.43	-2.8
1,847,122	-		ABZR87_RS08690	0.43	-0.6
1,847,122	-		ABZR87_RS08690	0.43	-1.6
1,847,122	-		ABZR87_RS08690	0.43	+1.5
1,847,122	-		ABZR87_RS08690	0.43	-0.7
1,847,122	-		ABZR87_RS08690	0.43	-0.7
1,847,134	+		ABZR87_RS08690	0.44	-1.2
1,847,135	-		ABZR87_RS08690	0.45	-0.9
1,847,230	+		ABZR87_RS08690	0.54	+0.9
1,847,230	+		ABZR87_RS08690	0.54	-2.5
1,847,230	+		ABZR87_RS08690	0.54	-0.6
1,847,230	+		ABZR87_RS08690	0.54	-1.4
1,847,297	+		ABZR87_RS08690	0.60	-0.1
1,847,297	+		ABZR87_RS08690	0.60	-1.8
1,847,297	+		ABZR87_RS08690	0.60	-2.4
1,847,297	+		ABZR87_RS08690	0.60	-0.3
1,847,297	+		ABZR87_RS08690	0.60	+0.5
1,847,298	-		ABZR87_RS08690	0.60	-0.6
1,847,298	-		ABZR87_RS08690	0.60	+0.4
1,847,298	-		ABZR87_RS08690	0.60	-0.8
1,847,298	-		ABZR87_RS08690	0.60	-0.4
1,847,395	+		ABZR87_RS08690	0.70	+1.3
1,847,395	+		ABZR87_RS08690	0.70	-1.8
1,847,395	+		ABZR87_RS08690	0.70	-0.3
1,847,396	-		ABZR87_RS08690	0.70	+0.2
1,847,396	-		ABZR87_RS08690	0.70	+0.6
1,847,396	-		ABZR87_RS08690	0.70	-3.3
1,847,396	-		ABZR87_RS08690	0.70	-0.3
1,847,396	-		ABZR87_RS08690	0.70	-0.4
1,847,396	-		ABZR87_RS08690	0.70	-3.1
1,847,396	-		ABZR87_RS08690	0.70	-0.9
1,847,396	-		ABZR87_RS08690	0.70	-2.8
1,847,412	+		ABZR87_RS08690	0.71	-3.0
1,847,412	+		ABZR87_RS08690	0.71	-0.7
1,847,412	+		ABZR87_RS08690	0.71	-0.9
1,847,413	-		ABZR87_RS08690	0.71	-3.4
1,847,413	-		ABZR87_RS08690	0.71	-0.8
1,847,413	-		ABZR87_RS08690	0.71	-1.8
1,847,413	-		ABZR87_RS08690	0.71	-3.0
1,847,413	-		ABZR87_RS08690	0.71	-1.5
1,847,420	-		ABZR87_RS08690	0.72	-0.3
1,847,448	-		ABZR87_RS08690	0.75	-2.9
1,847,491	+		ABZR87_RS08690	0.79	-2.9
1,847,491	+		ABZR87_RS08690	0.79	-0.5
1,847,491	+		ABZR87_RS08690	0.79	-0.2
1,847,491	+		ABZR87_RS08690	0.79	-0.4
1,847,492	-		ABZR87_RS08690	0.79	+0.9
1,847,492	-		ABZR87_RS08690	0.79	-3.5
1,847,492	-		ABZR87_RS08690	0.79	-1.2
1,847,492	-		ABZR87_RS08690	0.79	-0.6
1,847,501	+		ABZR87_RS08690	0.80	-0.5
1,847,501	+		ABZR87_RS08690	0.80	-0.8
1,847,502	-		ABZR87_RS08690	0.80	+0.1
1,847,502	-		ABZR87_RS08690	0.80	+0.9
1,847,537	+		ABZR87_RS08690	0.83	+0.4
1,847,537	+		ABZR87_RS08690	0.83	-1.9
1,847,537	+		ABZR87_RS08690	0.83	-1.5
1,847,537	+		ABZR87_RS08690	0.83	-2.1
1,847,538	-		ABZR87_RS08690	0.83	-2.2
1,847,538	-		ABZR87_RS08690	0.83	+1.9
1,847,538	-		ABZR87_RS08690	0.83	-1.4
1,847,538	-		ABZR87_RS08690	0.83	-0.5
1,847,538	-		ABZR87_RS08690	0.83	-2.6
1,847,538	-		ABZR87_RS08690	0.83	-0.8
1,847,597	+		ABZR87_RS08690	0.89	-0.8
1,847,597	+		ABZR87_RS08690	0.89	-1.1
1,847,597	+		ABZR87_RS08690	0.89	-0.1
1,847,597	+		ABZR87_RS08690	0.89	-3.1
1,847,598	-		ABZR87_RS08690	0.89	-1.4
1,847,598	-		ABZR87_RS08690	0.89	-3.1
1,847,598	-		ABZR87_RS08690	0.89	-0.1
1,847,598	-		ABZR87_RS08690	0.89	-3.1
1,847,598	-		ABZR87_RS08690	0.89	-1.2
1,847,708	+				+0.3
1,847,709	-				-1.0
1,847,709	-				+0.4
1,847,709	-				+1.1
1,847,709	-				-0.9
1,847,709	-				-1.6
1,847,722	+				+0.2
1,847,722	+				-1.8
1,847,722	+				-5.4
1,847,722	+				-2.1
1,847,723	-				-1.6
1,847,723	-				+0.1
1,847,723	-				-2.6
1,847,723	-				-2.6
1,847,723	-				-0.5
1,847,747	+				-1.1
1,847,872	+		ABZR87_RS08695	0.14	-1.1
1,847,872	+		ABZR87_RS08695	0.14	-0.5
1,847,998	-		ABZR87_RS08695	0.25	-2.8
1,847,998	-		ABZR87_RS08695	0.25	-4.2
1,847,998	-		ABZR87_RS08695	0.25	-2.3
1,847,998	-		ABZR87_RS08695	0.25	-2.7
1,847,999	+		ABZR87_RS08695	0.25	-1.2
1,847,999	+		ABZR87_RS08695	0.25	-0.9
1,848,000	-		ABZR87_RS08695	0.25	-3.1
1,848,000	-		ABZR87_RS08695	0.25	-2.2
1,848,000	-		ABZR87_RS08695	0.25	-4.6
1,848,000	-		ABZR87_RS08695	0.25	-2.9
1,848,000	-		ABZR87_RS08695	0.25	-0.2
1,848,000	-		ABZR87_RS08695	0.25	-2.0
1,848,000	-		ABZR87_RS08695	0.25	-3.7
1,848,000	-		ABZR87_RS08695	0.25	-5.0
1,848,000	-		ABZR87_RS08695	0.25	-3.0
1,848,000	-		ABZR87_RS08695	0.25	-3.8
1,848,000	-		ABZR87_RS08695	0.25	-1.8
1,848,000	-		ABZR87_RS08695	0.25	-2.7
1,848,000	-		ABZR87_RS08695	0.25	-3.7
1,848,000	-		ABZR87_RS08695	0.25	-1.9
1,848,000	-		ABZR87_RS08695	0.25	-3.2
1,848,042	-		ABZR87_RS08695	0.29	-3.6
1,848,042	-		ABZR87_RS08695	0.29	-3.1
1,848,042	-		ABZR87_RS08695	0.29	-4.8
1,848,042	-		ABZR87_RS08695	0.29	-1.5
1,848,042	-		ABZR87_RS08695	0.29	-1.2
1,848,150	+		ABZR87_RS08695	0.39	-0.7
1,848,150	+		ABZR87_RS08695	0.39	+3.2
1,848,151	-		ABZR87_RS08695	0.39	-2.4
1,848,151	-		ABZR87_RS08695	0.39	-3.7
1,848,151	-		ABZR87_RS08695	0.39	-1.9
1,848,151	-		ABZR87_RS08695	0.39	-3.7
1,848,201	-		ABZR87_RS08695	0.43	-2.4
1,848,201	-		ABZR87_RS08695	0.43	-2.2
1,848,201	-		ABZR87_RS08695	0.43	-3.0
1,848,241	-		ABZR87_RS08695	0.47	-3.0
1,848,241	-		ABZR87_RS08695	0.47	-4.1
1,848,241	-		ABZR87_RS08695	0.47	+2.2
1,848,241	-		ABZR87_RS08695	0.47	-3.7
1,848,241	-		ABZR87_RS08695	0.47	-0.5
1,848,241	-		ABZR87_RS08695	0.47	-1.4
1,848,241	-		ABZR87_RS08695	0.47	-3.3
1,848,241	-		ABZR87_RS08695	0.47	-2.8
1,848,241	-		ABZR87_RS08695	0.47	-1.7
1,848,241	-		ABZR87_RS08695	0.47	-1.4
1,848,241	-		ABZR87_RS08695	0.47	-1.2
1,848,241	-		ABZR87_RS08695	0.47	-3.6
1,848,241	-		ABZR87_RS08695	0.47	-2.3
1,848,241	-		ABZR87_RS08695	0.47	-3.3
1,848,334	-		ABZR87_RS08695	0.55	-3.9
1,848,334	-		ABZR87_RS08695	0.55	-3.0
1,848,334	-		ABZR87_RS08695	0.55	-3.6
1,848,334	-		ABZR87_RS08695	0.55	-2.4
1,848,364	-		ABZR87_RS08695	0.58	-3.0
1,848,364	-		ABZR87_RS08695	0.58	-0.4
1,848,364	-		ABZR87_RS08695	0.58	-2.4
1,848,364	-		ABZR87_RS08695	0.58	-3.3
1,848,368	-		ABZR87_RS08695	0.58	-1.7
1,848,368	-		ABZR87_RS08695	0.58	-1.0
1,848,368	-		ABZR87_RS08695	0.58	-1.6
1,848,368	-		ABZR87_RS08695	0.58	-1.1
1,848,368	-		ABZR87_RS08695	0.58	-1.5
1,848,369	-		ABZR87_RS08695	0.58	-2.3
1,848,369	-		ABZR87_RS08695	0.58	-2.5
1,848,439	-		ABZR87_RS08695	0.64	-2.3
1,848,439	-		ABZR87_RS08695	0.64	-1.2
1,848,439	-		ABZR87_RS08695	0.64	-1.6
1,848,439	-		ABZR87_RS08695	0.64	-3.1
1,848,439	-		ABZR87_RS08695	0.64	-3.3
1,848,439	-		ABZR87_RS08695	0.64	-0.5
1,848,448	-		ABZR87_RS08695	0.65	-3.3
1,848,448	-		ABZR87_RS08695	0.65	-2.9
1,848,448	-		ABZR87_RS08695	0.65	-3.9
1,848,448	-		ABZR87_RS08695	0.65	-0.6
1,848,448	-		ABZR87_RS08695	0.65	-2.4
1,848,448	-		ABZR87_RS08695	0.65	-2.9
1,848,448	-		ABZR87_RS08695	0.65	+0.1
1,848,457	-		ABZR87_RS08695	0.66	-3.5
1,848,457	-		ABZR87_RS08695	0.66	-2.7
1,848,481	-		ABZR87_RS08695	0.68	-3.2
1,848,481	-		ABZR87_RS08695	0.68	-2.3
1,848,481	-		ABZR87_RS08695	0.68	-1.6
1,848,482	-		ABZR87_RS08695	0.68	-2.2
1,848,483	-		ABZR87_RS08695	0.68	-3.8
1,848,483	-		ABZR87_RS08695	0.68	-3.7
1,848,483	-		ABZR87_RS08695	0.68	-2.2
1,848,496	-		ABZR87_RS08695	0.69	+1.2
1,848,496	-		ABZR87_RS08695	0.69	-3.8
1,848,496	-		ABZR87_RS08695	0.69	-3.3
1,848,564	-		ABZR87_RS08695	0.75	-2.5
1,848,598	-		ABZR87_RS08695	0.78	+0.4
1,848,606	-		ABZR87_RS08695	0.79	-1.6
1,848,606	-		ABZR87_RS08695	0.79	+0.6
1,848,626	-		ABZR87_RS08695	0.81	-2.5
1,848,626	-		ABZR87_RS08695	0.81	+0.4
1,848,626	-		ABZR87_RS08695	0.81	-2.0
1,848,626	-		ABZR87_RS08695	0.81	-3.7
1,848,663	-		ABZR87_RS08695	0.84	-1.6
1,848,663	-		ABZR87_RS08695	0.84	-1.8
1,848,663	-		ABZR87_RS08695	0.84	-2.2
1,848,663	-		ABZR87_RS08695	0.84	-0.5
1,848,663	-		ABZR87_RS08695	0.84	-2.0
1,848,663	-		ABZR87_RS08695	0.84	-3.0