Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS08015

Experiment: Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB
1,702,139	+		ABZR87_RS08005	0.85	-1.6
1,702,139	+		ABZR87_RS08005	0.85	-1.5
1,702,140	-		ABZR87_RS08005	0.85	-3.6
1,702,140	-		ABZR87_RS08005	0.85	+1.0
1,702,171	+		ABZR87_RS08005	0.87	+0.3
1,702,172	-		ABZR87_RS08005	0.87	+0.7
1,702,172	-		ABZR87_RS08005	0.87	-0.5
1,702,172	-		ABZR87_RS08005	0.87	+1.8
1,702,241	+				+1.6
1,702,241	+				+0.1
1,702,242	-				+0.7
1,702,242	-				+1.5
1,702,252	-				-3.4
1,702,282	+				+0.5
1,702,282	+				+0.3
1,702,282	+				-0.3
1,702,282	+				+2.7
1,702,283	-				-0.1
1,702,283	-				+2.0
1,702,283	-				-0.3
1,702,286	+				-1.6
1,702,286	+				-0.0
1,702,287	-				-0.1
1,702,287	-				-0.2
1,702,287	-				-0.5
1,702,287	-				+0.3
1,702,390	+				-1.5
1,702,405	+				+0.3
1,702,417	-				-0.8
1,702,494	+				+1.3
1,702,495	-				+1.6
1,702,527	+				-0.4
1,702,547	+				-1.6
1,702,547	+				+0.5
1,702,547	+				+0.3
1,702,547	+				-0.1
1,702,548	-				+0.5
1,702,598	+				+1.2
1,702,599	-				+0.1
1,702,651	-		ABZR87_RS08010	0.16	-1.8
1,702,651	-		ABZR87_RS08010	0.16	-1.5
1,702,678	+		ABZR87_RS08010	0.21	-0.5
1,702,679	-		ABZR87_RS08010	0.22	-0.6
1,702,687	+		ABZR87_RS08010	0.23	+0.2
1,702,687	+		ABZR87_RS08010	0.23	+1.7
1,702,687	+		ABZR87_RS08010	0.23	+0.2
1,702,687	+		ABZR87_RS08010	0.23	+0.7
1,702,688	-		ABZR87_RS08010	0.23	-2.7
1,702,688	-		ABZR87_RS08010	0.23	+0.1
1,702,688	-		ABZR87_RS08010	0.23	+1.2
1,702,688	-		ABZR87_RS08010	0.23	+0.6
1,702,718	+		ABZR87_RS08010	0.29	-0.0
1,702,718	+		ABZR87_RS08010	0.29	-0.1
1,702,719	-		ABZR87_RS08010	0.30	+0.5
1,702,761	+		ABZR87_RS08010	0.38	+0.1
1,702,840	-		ABZR87_RS08010	0.54	-1.6
1,702,867	+		ABZR87_RS08010	0.59	-0.3
1,702,868	-		ABZR87_RS08010	0.59	-0.5
1,702,881	-		ABZR87_RS08010	0.62	+0.7
1,702,899	+		ABZR87_RS08010	0.65	+0.4
1,702,899	+		ABZR87_RS08010	0.65	-2.3
1,702,899	+		ABZR87_RS08010	0.65	-1.1
1,702,899	+		ABZR87_RS08010	0.65	-2.5
1,702,900	-		ABZR87_RS08010	0.65	+1.9
1,702,900	-		ABZR87_RS08010	0.65	-0.8
1,702,927	-		ABZR87_RS08010	0.71	+2.4
1,702,937	+		ABZR87_RS08010	0.73	+0.5
1,702,938	-		ABZR87_RS08010	0.73	+1.6
1,702,938	-		ABZR87_RS08010	0.73	-1.5
1,702,938	-		ABZR87_RS08010	0.73	+0.4
1,702,956	+		ABZR87_RS08010	0.77	-1.0
1,702,956	+		ABZR87_RS08010	0.77	+1.9
1,702,956	+		ABZR87_RS08010	0.77	-1.1
1,703,029	-				-0.2
1,703,029	-				-0.0
1,703,046	+				-0.1
1,703,046	+				-0.0
1,703,047	-				+1.9
1,703,047	-				+1.3
1,703,050	+				+1.4
1,703,050	+				-0.7
1,703,050	+				-1.3
1,703,050	+				-0.2
1,703,050	+				+0.2
1,703,050	+				-1.3
1,703,050	+				-1.3
1,703,050	+				+1.3
1,703,051	-				-1.2
1,703,051	-				+0.7
1,703,088	-				+1.6
1,703,138	+				-2.4
1,703,179	+				-2.3
1,703,234	+		ABZR87_RS08015	0.20	-0.9
1,703,234	+		ABZR87_RS08015	0.20	-0.4
1,703,234	+		ABZR87_RS08015	0.20	-2.1
1,703,234	+		ABZR87_RS08015	0.20	+0.5
1,703,234	+		ABZR87_RS08015	0.20	+0.4
1,703,234	+		ABZR87_RS08015	0.20	-1.3
1,703,234	+		ABZR87_RS08015	0.20	-1.4
1,703,234	+		ABZR87_RS08015	0.20	+0.3
1,703,235	-		ABZR87_RS08015	0.21	-0.2
1,703,235	-		ABZR87_RS08015	0.21	-0.8
1,703,235	-		ABZR87_RS08015	0.21	+0.1
1,703,235	-		ABZR87_RS08015	0.21	-0.9
1,703,235	-		ABZR87_RS08015	0.21	-1.6
1,703,235	-		ABZR87_RS08015	0.21	-0.6
1,703,235	-		ABZR87_RS08015	0.21	+0.6
1,703,311	+		ABZR87_RS08015	0.36	+0.1
1,703,311	+		ABZR87_RS08015	0.36	-2.0
1,703,311	+		ABZR87_RS08015	0.36	-2.0
1,703,311	+		ABZR87_RS08015	0.36	-1.7
1,703,311	+		ABZR87_RS08015	0.36	-1.8
1,703,311	+		ABZR87_RS08015	0.36	-0.1
1,703,312	-		ABZR87_RS08015	0.37	+0.9
1,703,312	-		ABZR87_RS08015	0.37	-1.5
1,703,312	-		ABZR87_RS08015	0.37	-1.4
1,703,312	-		ABZR87_RS08015	0.37	-0.6
1,703,312	-		ABZR87_RS08015	0.37	-1.9
1,703,312	-		ABZR87_RS08015	0.37	+1.0
1,703,312	-		ABZR87_RS08015	0.37	-0.7
1,703,362	+		ABZR87_RS08015	0.47	-0.5
1,703,518	-		ABZR87_RS08015	0.80	-0.4
1,703,571	+				-0.3
1,703,571	+				-0.0
1,703,571	+				-2.3
1,703,572	-				+0.4
1,703,572	-				-0.6
1,703,572	-				-1.1
1,703,572	-				+1.0
1,703,572	-				-3.8
1,703,572	-				-1.1
1,703,654	+				+0.1
1,703,654	+				-1.9
1,703,655	-				+0.3
1,703,655	-				-0.3
1,703,655	-				-0.8
1,703,655	-				+0.3
1,703,655	-				-1.2
1,703,659	+				-1.4
1,703,659	+				-2.0
1,703,660	-				+0.1
1,703,660	-				-1.7
1,703,718	+				-0.0
1,703,719	-				+4.0
1,703,932	+		ABZR87_RS08020	0.12	-0.1
1,703,933	-		ABZR87_RS08020	0.13	-0.1
1,703,971	+		ABZR87_RS08020	0.15	+0.1
1,703,972	-		ABZR87_RS08020	0.15	+0.2
1,704,059	+		ABZR87_RS08020	0.20	+0.8
1,704,097	-		ABZR87_RS08020	0.22	+1.7
1,704,104	-		ABZR87_RS08020	0.23	+0.8
1,704,122	-		ABZR87_RS08020	0.24	-0.2
1,704,122	-		ABZR87_RS08020	0.24	+0.3
1,704,303	-		ABZR87_RS08020	0.34	-2.4
1,704,303	-		ABZR87_RS08020	0.34	+0.9
1,704,303	-		ABZR87_RS08020	0.34	+1.9
1,704,336	+		ABZR87_RS08020	0.36	+0.1
1,704,337	-		ABZR87_RS08020	0.36	-1.2
1,704,354	+		ABZR87_RS08020	0.37	-1.9
1,704,354	+		ABZR87_RS08020	0.37	+1.3
1,704,355	-		ABZR87_RS08020	0.37	+2.4
1,704,355	-		ABZR87_RS08020	0.37	+0.5
1,704,355	-		ABZR87_RS08020	0.37	+0.3
1,704,355	-		ABZR87_RS08020	0.37	-0.8
1,704,529	-		ABZR87_RS08020	0.48	-0.3
1,704,550	+		ABZR87_RS08020	0.49	-0.8
1,704,551	-		ABZR87_RS08020	0.49	+0.2
1,704,551	-		ABZR87_RS08020	0.49	-1.3
1,704,551	-		ABZR87_RS08020	0.49	-0.5
1,704,612	+		ABZR87_RS08020	0.52	+0.2
1,704,613	-		ABZR87_RS08020	0.52	-1.2