Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS07995

Experiment: Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB
1,698,371	+				+0.1
1,698,371	+				-0.9
1,698,371	+				-1.4
1,698,371	+				-0.1
1,698,371	+				+0.2
1,698,371	+				+1.9
1,698,371	+				-0.3
1,698,372	-				-1.1
1,698,372	-				-1.1
1,698,372	-				+0.7
1,698,372	-				-1.7
1,698,372	-				-0.5
1,698,372	-				-2.0
1,698,372	-				-0.9
1,698,372	-				+0.2
1,698,372	-				-0.5
1,698,372	-				-1.9
1,698,372	-				-0.9
1,698,372	-				-0.2
1,698,372	-				+0.3
1,698,372	-				+1.9
1,698,373	+				-1.2
1,698,374	-				-0.5
1,698,374	-				-2.6
1,698,435	+				-2.4
1,698,436	-				+0.9
1,698,436	-				+0.1
1,698,650	-		ABZR87_RS07990	0.31	+3.3
1,698,682	+		ABZR87_RS07990	0.35	+0.6
1,698,682	+		ABZR87_RS07990	0.35	+0.1
1,698,683	-		ABZR87_RS07990	0.35	+1.7
1,698,683	-		ABZR87_RS07990	0.35	+0.7
1,698,683	-		ABZR87_RS07990	0.35	-0.2
1,698,749	+		ABZR87_RS07990	0.45	+0.7
1,698,749	+		ABZR87_RS07990	0.45	+0.8
1,699,043	-		ABZR87_RS07990	0.87	-1.7
1,699,043	-		ABZR87_RS07990	0.87	+0.0
1,699,091	+				+0.1
1,699,092	-				-0.3
1,699,092	-				+1.4
1,699,129	+				-0.9
1,699,129	+				-1.9
1,699,154	+				-0.2
1,699,155	-				+0.1
1,699,246	+				+0.1
1,699,246	+				-0.9
1,699,247	-				+0.6
1,699,247	-				+3.3
1,699,247	-				+0.6
1,699,247	-				+0.3
1,699,247	-				-2.8
1,699,265	+				+0.3
1,699,265	+				-1.8
1,699,265	+				+0.3
1,699,266	-				+0.6
1,699,266	-				+1.7
1,699,266	-				-0.7
1,699,364	+				-1.8
1,699,364	+				-1.1
1,699,365	-				-1.3
1,699,440	+		ABZR87_RS07995	0.24	+0.9
1,699,441	-		ABZR87_RS07995	0.24	-2.3
1,699,441	-		ABZR87_RS07995	0.24	-2.0
1,699,441	-		ABZR87_RS07995	0.24	+0.6
1,699,442	+		ABZR87_RS07995	0.24	+0.1
1,699,442	+		ABZR87_RS07995	0.24	+1.6
1,699,442	+		ABZR87_RS07995	0.24	+0.5
1,699,443	-		ABZR87_RS07995	0.24	-0.6
1,699,443	-		ABZR87_RS07995	0.24	+0.2
1,699,443	-		ABZR87_RS07995	0.24	-0.5
1,699,443	-		ABZR87_RS07995	0.24	+1.9
1,699,471	+		ABZR87_RS07995	0.30	-0.7
1,699,472	-		ABZR87_RS07995	0.30	-0.6
1,699,472	-		ABZR87_RS07995	0.30	+1.1
1,699,562	+		ABZR87_RS07995	0.47	+0.5
1,699,562	+		ABZR87_RS07995	0.47	+0.9
1,699,562	+		ABZR87_RS07995	0.47	+0.5
1,699,563	-		ABZR87_RS07995	0.47	-0.5
1,699,563	-		ABZR87_RS07995	0.47	-1.9
1,699,582	+		ABZR87_RS07995	0.51	-0.5
1,699,582	+		ABZR87_RS07995	0.51	-0.2
1,699,583	-		ABZR87_RS07995	0.51	-0.7
1,699,583	-		ABZR87_RS07995	0.51	+3.3
1,699,583	-		ABZR87_RS07995	0.51	-1.2
1,699,583	-		ABZR87_RS07995	0.51	+1.1
1,699,583	-		ABZR87_RS07995	0.51	+0.1
1,699,583	-		ABZR87_RS07995	0.51	-0.5
1,699,586	+		ABZR87_RS07995	0.52	+1.0
1,699,586	+		ABZR87_RS07995	0.52	-0.6
1,699,586	+		ABZR87_RS07995	0.52	+0.9
1,699,586	+		ABZR87_RS07995	0.52	-0.3
1,699,586	+		ABZR87_RS07995	0.52	+0.2
1,699,587	-		ABZR87_RS07995	0.52	-1.1
1,699,587	-		ABZR87_RS07995	0.52	-1.7
1,699,587	-		ABZR87_RS07995	0.52	-0.4
1,699,587	-		ABZR87_RS07995	0.52	-0.0
1,699,587	-		ABZR87_RS07995	0.52	-0.8
1,699,587	-		ABZR87_RS07995	0.52	+0.5
1,699,589	-		ABZR87_RS07995	0.52	-1.0
1,699,628	+		ABZR87_RS07995	0.60	-1.1
1,699,658	-		ABZR87_RS07995	0.65	+1.2
1,699,691	+		ABZR87_RS07995	0.72	-0.1
1,699,691	+		ABZR87_RS07995	0.72	+0.5
1,699,692	-		ABZR87_RS07995	0.72	-0.8
1,699,692	-		ABZR87_RS07995	0.72	+0.7
1,699,695	+		ABZR87_RS07995	0.72	+1.2
1,699,695	+		ABZR87_RS07995	0.72	-1.1
1,699,696	-		ABZR87_RS07995	0.73	-1.3
1,699,696	-		ABZR87_RS07995	0.73	+2.8
1,699,696	-		ABZR87_RS07995	0.73	-2.6
1,699,696	-		ABZR87_RS07995	0.73	-0.7
1,699,780	+		ABZR87_RS07995	0.89	-2.1
1,699,780	+		ABZR87_RS07995	0.89	+0.8
1,699,780	+		ABZR87_RS07995	0.89	-2.4
1,699,781	-		ABZR87_RS07995	0.89	-1.6
1,699,816	-				-1.5
1,699,836	+				+0.2
1,699,836	+				-0.5
1,699,836	+				+0.0
1,699,837	-				+0.4
1,699,837	-				-0.1
1,699,865	+				-1.0
1,699,865	+				+1.7
1,699,866	-				+0.5
1,699,866	-				-0.3
1,699,979	+				-0.4
1,699,979	+				-0.9
1,699,979	+				-0.1
1,699,988	+				+0.5
1,699,988	+				-2.2
1,699,989	-				-0.4
1,700,046	+				-0.6
1,700,046	+				+0.5
1,700,063	+				-0.8
1,700,063	+				+2.5
1,700,064	-				-0.3
1,700,064	-				-0.4
1,700,064	-				+1.3
1,700,187	-		ABZR87_RS08000	0.19	+0.9
1,700,202	+		ABZR87_RS08000	0.22	+0.6
1,700,203	-		ABZR87_RS08000	0.22	+0.0
1,700,203	-		ABZR87_RS08000	0.22	-0.3
1,700,211	+		ABZR87_RS08000	0.24	-1.8
1,700,211	+		ABZR87_RS08000	0.24	-1.6
1,700,211	+		ABZR87_RS08000	0.24	+0.5
1,700,211	+		ABZR87_RS08000	0.24	-3.7
1,700,211	+		ABZR87_RS08000	0.24	+0.1
1,700,212	-		ABZR87_RS08000	0.24	-2.3
1,700,212	-		ABZR87_RS08000	0.24	+0.2
1,700,212	-		ABZR87_RS08000	0.24	-1.4
1,700,336	+		ABZR87_RS08000	0.49	+3.3
1,700,336	+		ABZR87_RS08000	0.49	-1.4
1,700,337	-		ABZR87_RS08000	0.49	-0.3
1,700,337	-		ABZR87_RS08000	0.49	+0.9
1,700,337	-		ABZR87_RS08000	0.49	-0.6
1,700,367	-		ABZR87_RS08000	0.55	+0.4
1,700,367	-		ABZR87_RS08000	0.55	-0.0
1,700,391	+		ABZR87_RS08000	0.60	-1.9
1,700,391	+		ABZR87_RS08000	0.60	-0.8
1,700,391	+		ABZR87_RS08000	0.60	-1.6
1,700,391	+		ABZR87_RS08000	0.60	-1.3
1,700,391	+		ABZR87_RS08000	0.60	-1.6
1,700,391	+		ABZR87_RS08000	0.60	-0.5
1,700,392	-		ABZR87_RS08000	0.60	-0.6
1,700,392	-		ABZR87_RS08000	0.60	-2.7
1,700,392	-		ABZR87_RS08000	0.60	-1.2
1,700,392	-		ABZR87_RS08000	0.60	+0.9
1,700,392	-		ABZR87_RS08000	0.60	+1.7
1,700,392	-		ABZR87_RS08000	0.60	-1.3
1,700,392	-		ABZR87_RS08000	0.60	+1.2
1,700,392	-		ABZR87_RS08000	0.60	-0.5
1,700,462	+		ABZR87_RS08000	0.74	-0.0
1,700,462	+		ABZR87_RS08000	0.74	-2.3
1,700,462	+		ABZR87_RS08000	0.74	+0.8
1,700,463	-		ABZR87_RS08000	0.74	-3.0
1,700,463	-		ABZR87_RS08000	0.74	+0.4
1,700,463	-		ABZR87_RS08000	0.74	-0.9
1,700,463	-		ABZR87_RS08000	0.74	-0.5
1,700,463	-		ABZR87_RS08000	0.74	-0.8
1,700,544	+				-2.4
1,700,571	+				+0.4
1,700,571	+				-0.5
1,700,571	+				-0.9
1,700,571	+				+1.7
1,700,572	-				+0.2
1,700,572	-				+0.4
1,700,597	+				+0.6
1,700,597	+				+1.3
1,700,597	+				+2.4
1,700,598	-				-1.2
1,700,598	-				-0.2
1,700,598	-				-1.5
1,700,598	-				-1.7
1,700,599	+				-0.0
1,700,599	+				+0.5
1,700,599	+				-0.5
1,700,599	+				-0.3
1,700,599	+				-2.2
1,700,599	+				-0.3
1,700,599	+				-0.3
1,700,600	-				+0.5
1,700,600	-				-0.8
1,700,600	-				-0.9
1,700,600	-				-2.0
1,700,600	-				-0.9
1,700,600	-				-1.8
1,700,604	+				-2.6
1,700,604	+				-0.3
1,700,604	+				-0.6
1,700,604	+				-1.7
1,700,604	+				-2.4
1,700,604	+				-0.9
1,700,604	+				+0.6
1,700,604	+				+1.2
1,700,605	-				-2.6
1,700,605	-				-0.9
1,700,605	-				-0.3
1,700,605	-				+2.6
1,700,605	-				-3.1
1,700,605	-				-0.1
1,700,609	+				-0.5
1,700,610	-				-1.6
1,700,659	+				+3.3
1,700,659	+				-1.4
1,700,660	-				-2.2
1,700,660	-				+1.6
1,700,660	-				+0.9
1,700,660	-				-1.8
1,700,693	+				-0.4
1,700,694	-				+0.2
1,700,694	-				-0.8
1,700,739	-				+1.1
1,700,739	-				+1.5
1,700,755	+				+1.1
1,700,755	+				+0.7
1,700,755	+				-0.5
1,700,755	+				+2.5
1,700,755	+				+0.2
1,700,755	+				-0.8
1,700,756	-				-0.7
1,700,756	-				+1.5
1,700,756	-				-1.5
1,700,756	-				+0.4
1,700,773	+				+0.5
1,700,773	+				+0.5
1,700,773	+				-0.5
1,700,773	+				-0.4
1,700,773	+				+1.2
1,700,774	-				+2.6
1,700,774	-				-2.2