Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS07375

Experiment: Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB
1,560,454	-		ABZR87_RS07370	0.46	+0.0
1,560,511	+		ABZR87_RS07370	0.51	+5.2
1,560,511	+		ABZR87_RS07370	0.51	-0.1
1,560,511	+		ABZR87_RS07370	0.51	-0.7
1,560,511	+		ABZR87_RS07370	0.51	-0.1
1,560,512	-		ABZR87_RS07370	0.51	+0.4
1,560,512	-		ABZR87_RS07370	0.51	+0.6
1,560,512	-		ABZR87_RS07370	0.51	+0.5
1,560,512	-		ABZR87_RS07370	0.51	+0.6
1,560,673	+		ABZR87_RS07370	0.64	-2.8
1,560,674	-		ABZR87_RS07370	0.64	+0.6
1,560,674	-		ABZR87_RS07370	0.64	+1.1
1,560,674	-		ABZR87_RS07370	0.64	-2.9
1,560,674	-		ABZR87_RS07370	0.64	-2.2
1,560,733	+		ABZR87_RS07370	0.69	+0.8
1,560,733	+		ABZR87_RS07370	0.69	-0.4
1,560,733	+		ABZR87_RS07370	0.69	-1.0
1,560,928	+		ABZR87_RS07370	0.84	-1.2
1,560,928	+		ABZR87_RS07370	0.84	-0.2
1,560,928	+		ABZR87_RS07370	0.84	+1.3
1,560,928	+		ABZR87_RS07370	0.84	+1.0
1,560,928	+		ABZR87_RS07370	0.84	+0.3
1,560,929	-		ABZR87_RS07370	0.84	-0.0
1,560,929	-		ABZR87_RS07370	0.84	-0.3
1,560,994	+		ABZR87_RS07370	0.90	+0.4
1,560,995	-		ABZR87_RS07370	0.90	+1.1
1,560,995	-		ABZR87_RS07370	0.90	+2.2
1,561,009	+				-0.6
1,561,009	+				-1.4
1,561,009	+				-0.6
1,561,010	-				-1.1
1,561,010	-				+1.2
1,561,010	-				-2.6
1,561,043	-				+2.4
1,561,105	+				-1.9
1,561,106	-				+1.0
1,561,106	-				+1.6
1,561,167	+				-0.2
1,561,168	-				-1.2
1,561,168	-				-0.0
1,561,225	+				+0.1
1,561,309	+		ABZR87_RS07375	0.22	-0.3
1,561,309	+		ABZR87_RS07375	0.22	+1.1
1,561,309	+		ABZR87_RS07375	0.22	-3.2
1,561,310	-		ABZR87_RS07375	0.22	-0.8
1,561,310	-		ABZR87_RS07375	0.22	-0.1
1,561,310	-		ABZR87_RS07375	0.22	-0.3
1,561,310	-		ABZR87_RS07375	0.22	-2.5
1,561,310	-		ABZR87_RS07375	0.22	-0.0
1,561,310	-		ABZR87_RS07375	0.22	-1.6
1,561,330	-		ABZR87_RS07375	0.26	+1.8
1,561,402	+		ABZR87_RS07375	0.38	-0.5
1,561,403	-		ABZR87_RS07375	0.38	+0.6
1,561,403	-		ABZR87_RS07375	0.38	-0.5
1,561,429	+		ABZR87_RS07375	0.43	+3.4
1,561,525	+		ABZR87_RS07375	0.59	+1.9
1,561,525	+		ABZR87_RS07375	0.59	+0.1
1,561,525	+		ABZR87_RS07375	0.59	+2.3
1,561,526	-		ABZR87_RS07375	0.59	+1.2
1,561,526	-		ABZR87_RS07375	0.59	-3.6
1,561,526	-		ABZR87_RS07375	0.59	-0.2
1,561,648	+		ABZR87_RS07375	0.80	+0.3
1,561,648	+		ABZR87_RS07375	0.80	-1.1
1,561,648	+		ABZR87_RS07375	0.80	-0.8
1,561,648	+		ABZR87_RS07375	0.80	+0.3
1,561,648	+		ABZR87_RS07375	0.80	-1.7
1,561,648	+		ABZR87_RS07375	0.80	+0.1
1,561,648	+		ABZR87_RS07375	0.80	+0.4
1,561,648	+		ABZR87_RS07375	0.80	+4.1
1,561,649	-		ABZR87_RS07375	0.81	-0.6
1,561,649	-		ABZR87_RS07375	0.81	-2.8
1,561,649	-		ABZR87_RS07375	0.81	+4.8
1,561,649	-		ABZR87_RS07375	0.81	-2.8
1,561,649	-		ABZR87_RS07375	0.81	+0.0
1,561,649	-		ABZR87_RS07375	0.81	-0.0
1,561,649	-		ABZR87_RS07375	0.81	-1.9
1,561,649	-		ABZR87_RS07375	0.81	-1.8
1,561,649	-		ABZR87_RS07375	0.81	+0.0
1,561,649	-		ABZR87_RS07375	0.81	-1.4
1,561,649	-		ABZR87_RS07375	0.81	+0.7
1,561,649	-		ABZR87_RS07375	0.81	-1.0
1,561,649	-		ABZR87_RS07375	0.81	+1.6
1,561,649	-		ABZR87_RS07375	0.81	+1.1
1,561,649	-		ABZR87_RS07375	0.81	+0.9
1,561,649	-		ABZR87_RS07375	0.81	+2.5
1,561,649	-		ABZR87_RS07375	0.81	+0.1
1,561,649	-		ABZR87_RS07375	0.81	+1.7
1,561,649	-		ABZR87_RS07375	0.81	-1.8
1,561,649	-		ABZR87_RS07375	0.81	+0.3
1,561,675	+		ABZR87_RS07375	0.85	+0.6
1,561,675	+		ABZR87_RS07375	0.85	-1.2
1,561,675	+		ABZR87_RS07375	0.85	+0.2
1,561,676	-		ABZR87_RS07375	0.85	+1.2
1,561,676	-		ABZR87_RS07375	0.85	+2.3
1,561,751	+				-1.6
1,561,751	+				-0.0
1,561,752	-				-1.4
1,561,752	-				-0.7
1,561,841	+				-0.1
1,561,841	+				+0.5
1,561,841	+				+0.5
1,561,842	-				-1.2
1,561,842	-				+0.4
1,561,857	-				+0.3
1,561,893	+				+1.4
1,561,893	+				+1.6
1,561,894	-				+2.3
1,561,894	-				+3.0
1,561,907	-				-3.5
1,562,034	+				-2.6
1,562,034	+				+2.3
1,562,034	+				-2.9
1,562,034	+				-0.9
1,562,034	+				-0.1
1,562,040	+				-2.6
1,562,040	+				-1.9
1,562,041	-				+0.7
1,562,041	-				-4.4
1,562,041	-				-1.0
1,562,041	-				-0.8
1,562,154	+				-1.7
1,562,154	+				-1.8
1,562,154	+				-1.1
1,562,155	-				+1.3
1,562,155	-				-0.4
1,562,155	-				-0.4
1,562,196	+				-1.4
1,562,197	-				-1.5
1,562,197	-				-2.2
1,562,197	-				-1.0
1,562,197	-				-0.9
1,562,409	+		ABZR87_RS07380	0.11	-1.8
1,562,409	+		ABZR87_RS07380	0.11	-0.9
1,562,409	+		ABZR87_RS07380	0.11	-1.8
1,562,409	+		ABZR87_RS07380	0.11	-2.2
1,562,409	+		ABZR87_RS07380	0.11	-2.0
1,562,409	+		ABZR87_RS07380	0.11	-2.4
1,562,409	+		ABZR87_RS07380	0.11	-1.9
1,562,409	+		ABZR87_RS07380	0.11	-0.1
1,562,409	+		ABZR87_RS07380	0.11	-1.0
1,562,410	-		ABZR87_RS07380	0.11	-1.4
1,562,410	-		ABZR87_RS07380	0.11	-1.2
1,562,410	-		ABZR87_RS07380	0.11	+0.7
1,562,410	-		ABZR87_RS07380	0.11	+0.0
1,562,410	-		ABZR87_RS07380	0.11	-2.9
1,562,410	-		ABZR87_RS07380	0.11	+1.3
1,562,410	-		ABZR87_RS07380	0.11	-1.9
1,562,637	+		ABZR87_RS07380	0.17	+0.6
1,562,637	+		ABZR87_RS07380	0.17	-2.2
1,562,661	-		ABZR87_RS07380	0.17	-1.1
1,562,685	-		ABZR87_RS07380	0.18	-1.5
1,562,760	+		ABZR87_RS07380	0.20	-0.7
1,562,760	+		ABZR87_RS07380	0.20	-1.8
1,562,760	+		ABZR87_RS07380	0.20	-2.2
1,562,760	+		ABZR87_RS07380	0.20	-1.5
1,562,760	+		ABZR87_RS07380	0.20	-3.3
1,562,761	-		ABZR87_RS07380	0.20	-2.6
1,562,761	-		ABZR87_RS07380	0.20	-2.6