Experiment: Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS04550 and ABZR87_RS04555 are separated by 76 nucleotides ABZR87_RS04555 and ABZR87_RS04560 are separated by 19 nucleotides ABZR87_RS04560 and ABZR87_RS04565 are separated by 23 nucleotides ABZR87_RS04565 and ABZR87_RS04570 are separated by 288 nucleotides
ABZR87_RS04550: ABZR87_RS04550 - MFS transporter, at 952,249 to 953,715
_RS04550
ABZR87_RS04555: ABZR87_RS04555 - helix-turn-helix transcriptional regulator, at 953,792 to 954,685
_RS04555
ABZR87_RS04560: ABZR87_RS04560 - hydrolase, at 954,705 to 955,304
_RS04560
ABZR87_RS04565: ABZR87_RS04565 - PaaI family thioesterase, at 955,328 to 955,762
_RS04565
ABZR87_RS04570: ABZR87_RS04570 - porin, at 956,051 to 957,178
_RS04570
Position (kb) 954
955
956 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 953.748 kb on + strand at 953.748 kb on + strand at 953.748 kb on + strand at 953.748 kb on + strand at 953.748 kb on + strand at 953.748 kb on + strand at 953.749 kb on - strand at 953.749 kb on - strand at 953.749 kb on - strand at 953.749 kb on - strand at 953.777 kb on + strand at 953.778 kb on - strand at 953.778 kb on - strand at 953.778 kb on - strand at 953.783 kb on + strand at 953.788 kb on + strand at 953.788 kb on + strand at 953.788 kb on + strand at 953.788 kb on + strand at 953.789 kb on - strand at 953.789 kb on - strand at 953.830 kb on + strand at 953.830 kb on + strand at 953.830 kb on + strand at 953.830 kb on + strand at 953.831 kb on - strand at 953.831 kb on - strand at 953.831 kb on - strand at 953.831 kb on - strand at 953.831 kb on - strand at 953.831 kb on - strand at 953.834 kb on - strand at 954.016 kb on + strand, within ABZR87_RS04555 at 954.016 kb on + strand, within ABZR87_RS04555 at 954.016 kb on + strand, within ABZR87_RS04555 at 954.031 kb on + strand, within ABZR87_RS04555 at 954.032 kb on + strand, within ABZR87_RS04555 at 954.032 kb on + strand, within ABZR87_RS04555 at 954.032 kb on + strand, within ABZR87_RS04555 at 954.032 kb on + strand, within ABZR87_RS04555 at 954.032 kb on + strand, within ABZR87_RS04555 at 954.033 kb on - strand, within ABZR87_RS04555 at 954.033 kb on - strand, within ABZR87_RS04555 at 954.033 kb on - strand, within ABZR87_RS04555 at 954.033 kb on - strand, within ABZR87_RS04555 at 954.033 kb on - strand, within ABZR87_RS04555 at 954.269 kb on + strand, within ABZR87_RS04555 at 954.270 kb on - strand, within ABZR87_RS04555 at 954.270 kb on - strand, within ABZR87_RS04555 at 954.362 kb on + strand, within ABZR87_RS04555 at 954.362 kb on + strand, within ABZR87_RS04555 at 954.362 kb on + strand, within ABZR87_RS04555 at 954.362 kb on + strand, within ABZR87_RS04555 at 954.362 kb on + strand, within ABZR87_RS04555 at 954.362 kb on + strand, within ABZR87_RS04555 at 954.362 kb on + strand, within ABZR87_RS04555 at 954.362 kb on + strand, within ABZR87_RS04555 at 954.362 kb on + strand, within ABZR87_RS04555 at 954.362 kb on + strand, within ABZR87_RS04555 at 954.362 kb on + strand, within ABZR87_RS04555 at 954.362 kb on + strand, within ABZR87_RS04555 at 954.362 kb on + strand, within ABZR87_RS04555 at 954.362 kb on + strand, within ABZR87_RS04555 at 954.362 kb on + strand, within ABZR87_RS04555 at 954.363 kb on - strand, within ABZR87_RS04555 at 954.363 kb on - strand, within ABZR87_RS04555 at 954.363 kb on - strand, within ABZR87_RS04555 at 954.374 kb on + strand, within ABZR87_RS04555 at 954.375 kb on - strand, within ABZR87_RS04555 at 954.375 kb on - strand, within ABZR87_RS04555 at 954.375 kb on - strand, within ABZR87_RS04555 at 954.375 kb on - strand, within ABZR87_RS04555 at 954.523 kb on + strand, within ABZR87_RS04555 at 954.611 kb on + strand at 954.612 kb on - strand at 954.612 kb on - strand at 954.612 kb on - strand at 954.612 kb on - strand at 954.659 kb on + strand at 954.659 kb on + strand at 954.659 kb on + strand at 954.659 kb on + strand at 954.659 kb on + strand at 954.659 kb on + strand at 954.660 kb on - strand at 954.660 kb on - strand at 954.660 kb on - strand at 954.660 kb on - strand at 954.765 kb on + strand, within ABZR87_RS04560 at 954.765 kb on + strand, within ABZR87_RS04560 at 954.765 kb on + strand, within ABZR87_RS04560 at 954.766 kb on - strand, within ABZR87_RS04560 at 954.955 kb on + strand, within ABZR87_RS04560 at 954.956 kb on - strand, within ABZR87_RS04560 at 955.099 kb on + strand, within ABZR87_RS04560 at 955.099 kb on + strand, within ABZR87_RS04560 at 955.100 kb on - strand, within ABZR87_RS04560 at 955.100 kb on - strand, within ABZR87_RS04560 at 955.185 kb on + strand, within ABZR87_RS04560 at 955.186 kb on - strand, within ABZR87_RS04560 at 955.199 kb on + strand, within ABZR87_RS04560 at 955.200 kb on - strand, within ABZR87_RS04560 at 955.329 kb on + strand at 955.330 kb on - strand at 955.331 kb on - strand at 955.463 kb on + strand, within ABZR87_RS04565 at 955.509 kb on + strand, within ABZR87_RS04565 at 955.531 kb on + strand, within ABZR87_RS04565 at 955.806 kb on - strand at 955.887 kb on + strand at 955.894 kb on + strand at 955.895 kb on - strand at 955.895 kb on - strand at 955.895 kb on - strand at 955.944 kb on + strand at 955.945 kb on - strand at 955.945 kb on - strand at 955.945 kb on - strand at 955.945 kb on - strand at 955.945 kb on - strand at 955.945 kb on - strand at 955.945 kb on - strand at 956.144 kb on + strand at 956.144 kb on + strand at 956.291 kb on + strand, within ABZR87_RS04570
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB remove 953,748 + -0.5 953,748 + -0.8 953,748 + -0.9 953,748 + +0.3 953,748 + -2.7 953,748 + +1.0 953,749 - -1.2 953,749 - +1.5 953,749 - -0.8 953,749 - +1.4 953,777 + -1.1 953,778 - -1.7 953,778 - -1.5 953,778 - -0.5 953,783 + -1.5 953,788 + -0.3 953,788 + +0.9 953,788 + +0.4 953,788 + -1.7 953,789 - +1.2 953,789 - -2.0 953,830 + +1.1 953,830 + -0.1 953,830 + -0.5 953,830 + +0.5 953,831 - +1.2 953,831 - +0.8 953,831 - -0.3 953,831 - +0.1 953,831 - -0.5 953,831 - +1.4 953,834 - -1.0 954,016 + ABZR87_RS04555 0.25 -1.1 954,016 + ABZR87_RS04555 0.25 +1.4 954,016 + ABZR87_RS04555 0.25 -2.4 954,031 + ABZR87_RS04555 0.27 -0.4 954,032 + ABZR87_RS04555 0.27 +0.6 954,032 + ABZR87_RS04555 0.27 +0.9 954,032 + ABZR87_RS04555 0.27 +0.5 954,032 + ABZR87_RS04555 0.27 -2.8 954,032 + ABZR87_RS04555 0.27 -1.7 954,033 - ABZR87_RS04555 0.27 +0.9 954,033 - ABZR87_RS04555 0.27 +1.0 954,033 - ABZR87_RS04555 0.27 -0.7 954,033 - ABZR87_RS04555 0.27 -2.5 954,033 - ABZR87_RS04555 0.27 -2.0 954,269 + ABZR87_RS04555 0.53 +1.0 954,270 - ABZR87_RS04555 0.53 -0.4 954,270 - ABZR87_RS04555 0.53 -1.5 954,362 + ABZR87_RS04555 0.64 -0.7 954,362 + ABZR87_RS04555 0.64 +0.3 954,362 + ABZR87_RS04555 0.64 -2.4 954,362 + ABZR87_RS04555 0.64 -0.9 954,362 + ABZR87_RS04555 0.64 +0.6 954,362 + ABZR87_RS04555 0.64 -1.6 954,362 + ABZR87_RS04555 0.64 +0.8 954,362 + ABZR87_RS04555 0.64 -1.2 954,362 + ABZR87_RS04555 0.64 +0.3 954,362 + ABZR87_RS04555 0.64 +1.2 954,362 + ABZR87_RS04555 0.64 +0.8 954,362 + ABZR87_RS04555 0.64 -1.3 954,362 + ABZR87_RS04555 0.64 -2.2 954,362 + ABZR87_RS04555 0.64 +0.0 954,362 + ABZR87_RS04555 0.64 -1.9 954,363 - ABZR87_RS04555 0.64 -0.4 954,363 - ABZR87_RS04555 0.64 +1.5 954,363 - ABZR87_RS04555 0.64 +0.2 954,374 + ABZR87_RS04555 0.65 +0.6 954,375 - ABZR87_RS04555 0.65 -1.4 954,375 - ABZR87_RS04555 0.65 -1.0 954,375 - ABZR87_RS04555 0.65 -0.4 954,375 - ABZR87_RS04555 0.65 -0.3 954,523 + ABZR87_RS04555 0.82 +1.2 954,611 + +1.8 954,612 - +0.8 954,612 - +0.5 954,612 - -1.6 954,612 - -1.8 954,659 + +0.5 954,659 + +3.2 954,659 + +0.1 954,659 + -0.5 954,659 + -0.9 954,659 + -0.4 954,660 - +1.2 954,660 - +0.4 954,660 - +0.3 954,660 - +0.2 954,765 + ABZR87_RS04560 0.10 -2.0 954,765 + ABZR87_RS04560 0.10 +2.2 954,765 + ABZR87_RS04560 0.10 -0.7 954,766 - ABZR87_RS04560 0.10 +2.6 954,955 + ABZR87_RS04560 0.42 +0.0 954,956 - ABZR87_RS04560 0.42 -0.5 955,099 + ABZR87_RS04560 0.66 +0.1 955,099 + ABZR87_RS04560 0.66 -0.3 955,100 - ABZR87_RS04560 0.66 -0.2 955,100 - ABZR87_RS04560 0.66 -1.0 955,185 + ABZR87_RS04560 0.80 -2.4 955,186 - ABZR87_RS04560 0.80 +0.7 955,199 + ABZR87_RS04560 0.82 +0.9 955,200 - ABZR87_RS04560 0.82 -0.5 955,329 + +0.9 955,330 - +2.1 955,331 - -0.2 955,463 + ABZR87_RS04565 0.31 -1.0 955,509 + ABZR87_RS04565 0.42 +1.3 955,531 + ABZR87_RS04565 0.47 +0.4 955,806 - -1.4 955,887 + +1.5 955,894 + -1.9 955,895 - -1.0 955,895 - +0.8 955,895 - -0.7 955,944 + +1.2 955,945 - -0.0 955,945 - +0.5 955,945 - +0.5 955,945 - +0.6 955,945 - -3.0 955,945 - +3.7 955,945 - -1.8 956,144 + -0.0 956,144 + -0.3 956,291 + ABZR87_RS04570 0.21 -0.6
Or see this region's nucleotide sequence