Experiment: Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS02905 and ABZR87_RS02910 are separated by 8 nucleotides ABZR87_RS02910 and ABZR87_RS02915 overlap by 4 nucleotides ABZR87_RS02915 and ABZR87_RS02920 are separated by 260 nucleotides
ABZR87_RS02905: ABZR87_RS02905 - alpha-2-macroglobulin, at 603,300 to 608,084
_RS02905
ABZR87_RS02910: ABZR87_RS02910 - DUF1175 family protein, at 608,093 to 608,797
_RS02910
ABZR87_RS02915: ABZR87_RS02915 - DUF2138 domain-containing protein, at 608,794 to 610,623
_RS02915
ABZR87_RS02920: ABZR87_RS02920 - DNA-directed RNA polymerase subunit beta', at 610,884 to 615,113
_RS02920
Position (kb) 608
609
610
611 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5
6 at 607.795 kb on + strand at 607.796 kb on - strand at 607.840 kb on + strand at 607.840 kb on + strand at 607.841 kb on - strand at 607.841 kb on - strand at 607.841 kb on - strand at 607.891 kb on + strand at 607.891 kb on + strand at 607.892 kb on - strand at 607.892 kb on - strand at 607.954 kb on - strand at 608.242 kb on - strand, within ABZR87_RS02910 at 608.250 kb on + strand, within ABZR87_RS02910 at 608.250 kb on + strand, within ABZR87_RS02910 at 608.250 kb on + strand, within ABZR87_RS02910 at 608.251 kb on - strand, within ABZR87_RS02910 at 608.251 kb on - strand, within ABZR87_RS02910 at 608.251 kb on - strand, within ABZR87_RS02910 at 608.382 kb on + strand, within ABZR87_RS02910 at 608.382 kb on + strand, within ABZR87_RS02910 at 608.382 kb on + strand, within ABZR87_RS02910 at 608.382 kb on + strand, within ABZR87_RS02910 at 608.382 kb on + strand, within ABZR87_RS02910 at 608.382 kb on + strand, within ABZR87_RS02910 at 608.382 kb on + strand, within ABZR87_RS02910 at 608.383 kb on - strand, within ABZR87_RS02910 at 608.383 kb on - strand, within ABZR87_RS02910 at 608.383 kb on - strand, within ABZR87_RS02910 at 608.662 kb on + strand, within ABZR87_RS02910 at 608.663 kb on - strand, within ABZR87_RS02910 at 608.714 kb on + strand, within ABZR87_RS02910 at 608.714 kb on + strand, within ABZR87_RS02910 at 608.715 kb on - strand, within ABZR87_RS02910 at 608.715 kb on - strand, within ABZR87_RS02910 at 608.715 kb on - strand, within ABZR87_RS02910 at 608.715 kb on - strand, within ABZR87_RS02910 at 608.715 kb on - strand, within ABZR87_RS02910 at 608.971 kb on + strand at 609.150 kb on + strand, within ABZR87_RS02915 at 609.263 kb on + strand, within ABZR87_RS02915 at 609.264 kb on - strand, within ABZR87_RS02915 at 609.316 kb on - strand, within ABZR87_RS02915 at 609.316 kb on - strand, within ABZR87_RS02915 at 609.321 kb on - strand, within ABZR87_RS02915 at 609.395 kb on + strand, within ABZR87_RS02915 at 609.395 kb on + strand, within ABZR87_RS02915 at 609.395 kb on + strand, within ABZR87_RS02915 at 609.396 kb on - strand, within ABZR87_RS02915 at 609.435 kb on - strand, within ABZR87_RS02915 at 609.435 kb on - strand, within ABZR87_RS02915 at 609.435 kb on - strand, within ABZR87_RS02915 at 609.548 kb on + strand, within ABZR87_RS02915 at 609.548 kb on + strand, within ABZR87_RS02915 at 609.839 kb on + strand, within ABZR87_RS02915 at 609.839 kb on + strand, within ABZR87_RS02915 at 609.839 kb on + strand, within ABZR87_RS02915 at 609.839 kb on + strand, within ABZR87_RS02915 at 609.840 kb on - strand, within ABZR87_RS02915 at 609.863 kb on + strand, within ABZR87_RS02915 at 609.863 kb on + strand, within ABZR87_RS02915 at 609.863 kb on + strand, within ABZR87_RS02915 at 609.863 kb on + strand, within ABZR87_RS02915 at 609.863 kb on + strand, within ABZR87_RS02915 at 609.864 kb on - strand, within ABZR87_RS02915 at 609.864 kb on - strand, within ABZR87_RS02915 at 609.864 kb on - strand, within ABZR87_RS02915 at 609.864 kb on - strand, within ABZR87_RS02915 at 609.918 kb on - strand, within ABZR87_RS02915 at 610.100 kb on + strand, within ABZR87_RS02915 at 610.100 kb on + strand, within ABZR87_RS02915 at 610.100 kb on + strand, within ABZR87_RS02915 at 610.100 kb on + strand, within ABZR87_RS02915 at 610.100 kb on + strand, within ABZR87_RS02915 at 610.101 kb on - strand, within ABZR87_RS02915 at 610.101 kb on - strand, within ABZR87_RS02915 at 610.326 kb on - strand, within ABZR87_RS02915 at 610.326 kb on - strand, within ABZR87_RS02915 at 610.368 kb on - strand, within ABZR87_RS02915 at 610.379 kb on + strand, within ABZR87_RS02915 at 610.379 kb on + strand, within ABZR87_RS02915 at 610.380 kb on - strand, within ABZR87_RS02915 at 610.380 kb on - strand, within ABZR87_RS02915 at 610.380 kb on - strand, within ABZR87_RS02915 at 610.382 kb on + strand, within ABZR87_RS02915 at 610.712 kb on + strand at 610.712 kb on + strand at 610.712 kb on + strand at 610.712 kb on + strand at 610.713 kb on - strand at 610.713 kb on - strand at 610.728 kb on + strand at 610.743 kb on + strand at 610.743 kb on + strand at 610.769 kb on + strand at 610.770 kb on - strand at 610.816 kb on + strand at 610.825 kb on + strand at 610.826 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB remove 607,795 + +1.0 607,796 - -1.9 607,840 + +0.8 607,840 + +1.9 607,841 - -1.5 607,841 - -0.2 607,841 - +0.6 607,891 + +0.2 607,891 + +3.1 607,892 - +0.3 607,892 - -3.0 607,954 - +2.2 608,242 - ABZR87_RS02910 0.21 -2.3 608,250 + ABZR87_RS02910 0.22 -3.0 608,250 + ABZR87_RS02910 0.22 -1.7 608,250 + ABZR87_RS02910 0.22 -1.3 608,251 - ABZR87_RS02910 0.22 -2.4 608,251 - ABZR87_RS02910 0.22 -0.6 608,251 - ABZR87_RS02910 0.22 +0.1 608,382 + ABZR87_RS02910 0.41 +2.4 608,382 + ABZR87_RS02910 0.41 -1.2 608,382 + ABZR87_RS02910 0.41 +1.1 608,382 + ABZR87_RS02910 0.41 +0.2 608,382 + ABZR87_RS02910 0.41 -0.7 608,382 + ABZR87_RS02910 0.41 -2.3 608,382 + ABZR87_RS02910 0.41 -0.9 608,383 - ABZR87_RS02910 0.41 -1.6 608,383 - ABZR87_RS02910 0.41 +2.2 608,383 - ABZR87_RS02910 0.41 -2.6 608,662 + ABZR87_RS02910 0.81 +0.6 608,663 - ABZR87_RS02910 0.81 -0.1 608,714 + ABZR87_RS02910 0.88 -0.7 608,714 + ABZR87_RS02910 0.88 +0.9 608,715 - ABZR87_RS02910 0.88 -0.2 608,715 - ABZR87_RS02910 0.88 -0.7 608,715 - ABZR87_RS02910 0.88 -0.9 608,715 - ABZR87_RS02910 0.88 +1.3 608,715 - ABZR87_RS02910 0.88 +0.5 608,971 + -0.4 609,150 + ABZR87_RS02915 0.19 -0.7 609,263 + ABZR87_RS02915 0.26 -2.0 609,264 - ABZR87_RS02915 0.26 +0.5 609,316 - ABZR87_RS02915 0.29 +1.3 609,316 - ABZR87_RS02915 0.29 -0.5 609,321 - ABZR87_RS02915 0.29 -2.0 609,395 + ABZR87_RS02915 0.33 +0.3 609,395 + ABZR87_RS02915 0.33 -2.6 609,395 + ABZR87_RS02915 0.33 -1.4 609,396 - ABZR87_RS02915 0.33 +2.1 609,435 - ABZR87_RS02915 0.35 +0.5 609,435 - ABZR87_RS02915 0.35 -0.4 609,435 - ABZR87_RS02915 0.35 +1.3 609,548 + ABZR87_RS02915 0.41 -1.0 609,548 + ABZR87_RS02915 0.41 +0.8 609,839 + ABZR87_RS02915 0.57 +1.6 609,839 + ABZR87_RS02915 0.57 -2.1 609,839 + ABZR87_RS02915 0.57 -0.1 609,839 + ABZR87_RS02915 0.57 +1.8 609,840 - ABZR87_RS02915 0.57 +0.8 609,863 + ABZR87_RS02915 0.58 +0.2 609,863 + ABZR87_RS02915 0.58 -1.1 609,863 + ABZR87_RS02915 0.58 +0.3 609,863 + ABZR87_RS02915 0.58 +0.7 609,863 + ABZR87_RS02915 0.58 +0.0 609,864 - ABZR87_RS02915 0.58 +2.6 609,864 - ABZR87_RS02915 0.58 +0.7 609,864 - ABZR87_RS02915 0.58 +0.5 609,864 - ABZR87_RS02915 0.58 +0.2 609,918 - ABZR87_RS02915 0.61 +0.7 610,100 + ABZR87_RS02915 0.71 -1.1 610,100 + ABZR87_RS02915 0.71 -0.2 610,100 + ABZR87_RS02915 0.71 +0.6 610,100 + ABZR87_RS02915 0.71 +0.3 610,100 + ABZR87_RS02915 0.71 -0.7 610,101 - ABZR87_RS02915 0.71 -0.4 610,101 - ABZR87_RS02915 0.71 -1.0 610,326 - ABZR87_RS02915 0.84 +0.8 610,326 - ABZR87_RS02915 0.84 +0.4 610,368 - ABZR87_RS02915 0.86 +0.8 610,379 + ABZR87_RS02915 0.87 +1.3 610,379 + ABZR87_RS02915 0.87 +1.4 610,380 - ABZR87_RS02915 0.87 +0.3 610,380 - ABZR87_RS02915 0.87 -0.2 610,380 - ABZR87_RS02915 0.87 -0.8 610,382 + ABZR87_RS02915 0.87 -1.2 610,712 + +0.3 610,712 + -2.3 610,712 + -0.9 610,712 + +2.6 610,713 - -2.5 610,713 - -0.5 610,728 + -0.2 610,743 + +1.6 610,743 + +3.6 610,769 + -1.9 610,770 - +0.9 610,816 + +6.2 610,825 + +0.3 610,826 - +1.2
Or see this region's nucleotide sequence