Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS01750

Experiment: Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS01745 and ABZR87_RS01750 overlap by 8 nucleotidesABZR87_RS01750 and ABZR87_RS01755 are separated by 39 nucleotides ABZR87_RS01745: ABZR87_RS01745 - 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD, at 371,449 to 372,045 _RS01745 ABZR87_RS01750: ABZR87_RS01750 - sigma-54 dependent transcriptional regulator, at 372,038 to 373,663 _RS01750 ABZR87_RS01755: ABZR87_RS01755 - ATP-binding protein, at 373,703 to 375,742 _RS01755 Position (kb) 372 373 374Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 371.063 kb on + strandat 371.064 kb on - strandat 371.275 kb on - strandat 371.275 kb on - strandat 371.316 kb on + strandat 371.465 kb on + strandat 371.588 kb on + strand, within ABZR87_RS01745at 371.630 kb on + strand, within ABZR87_RS01745at 371.631 kb on - strand, within ABZR87_RS01745at 371.631 kb on - strand, within ABZR87_RS01745at 371.631 kb on - strand, within ABZR87_RS01745at 371.631 kb on - strand, within ABZR87_RS01745at 371.831 kb on + strand, within ABZR87_RS01745at 371.831 kb on + strand, within ABZR87_RS01745at 371.831 kb on + strand, within ABZR87_RS01745at 371.832 kb on - strand, within ABZR87_RS01745at 371.832 kb on - strand, within ABZR87_RS01745at 372.191 kb on - strandat 372.247 kb on - strand, within ABZR87_RS01750at 372.247 kb on - strand, within ABZR87_RS01750at 372.373 kb on + strand, within ABZR87_RS01750at 372.374 kb on - strand, within ABZR87_RS01750at 372.374 kb on - strand, within ABZR87_RS01750at 372.374 kb on - strand, within ABZR87_RS01750at 372.374 kb on - strand, within ABZR87_RS01750at 372.375 kb on + strand, within ABZR87_RS01750at 372.375 kb on + strand, within ABZR87_RS01750at 372.375 kb on + strand, within ABZR87_RS01750at 372.375 kb on + strand, within ABZR87_RS01750at 372.375 kb on + strand, within ABZR87_RS01750at 372.375 kb on + strand, within ABZR87_RS01750at 372.375 kb on + strand, within ABZR87_RS01750at 372.376 kb on - strand, within ABZR87_RS01750at 372.376 kb on - strand, within ABZR87_RS01750at 372.376 kb on - strand, within ABZR87_RS01750at 372.376 kb on - strand, within ABZR87_RS01750at 372.376 kb on - strand, within ABZR87_RS01750at 372.750 kb on + strand, within ABZR87_RS01750at 372.750 kb on + strand, within ABZR87_RS01750at 372.751 kb on - strand, within ABZR87_RS01750at 373.011 kb on + strand, within ABZR87_RS01750at 373.347 kb on + strand, within ABZR87_RS01750at 373.347 kb on + strand, within ABZR87_RS01750at 373.348 kb on - strand, within ABZR87_RS01750at 373.704 kb on + strandat 373.705 kb on - strandat 373.861 kb on + strandat 373.861 kb on + strandat 373.881 kb on + strandat 373.881 kb on + strandat 373.881 kb on + strandat 373.881 kb on + strandat 373.881 kb on + strandat 373.882 kb on - strandat 373.882 kb on - strandat 373.882 kb on - strandat 373.882 kb on - strandat 373.882 kb on - strandat 373.882 kb on - strandat 373.882 kb on - strandat 373.951 kb on + strand, within ABZR87_RS01755at 374.010 kb on + strand, within ABZR87_RS01755at 374.011 kb on - strand, within ABZR87_RS01755at 374.049 kb on + strand, within ABZR87_RS01755at 374.346 kb on - strand, within ABZR87_RS01755

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB
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371,063 + +0.1
371,064 - -2.6
371,275 - -1.5
371,275 - +0.8
371,316 + +0.7
371,465 + +0.7
371,588 + ABZR87_RS01745 0.23 -3.7
371,630 + ABZR87_RS01745 0.30 -4.1
371,631 - ABZR87_RS01745 0.30 -4.1
371,631 - ABZR87_RS01745 0.30 -1.1
371,631 - ABZR87_RS01745 0.30 -2.2
371,631 - ABZR87_RS01745 0.30 -1.1
371,831 + ABZR87_RS01745 0.64 +1.0
371,831 + ABZR87_RS01745 0.64 -1.1
371,831 + ABZR87_RS01745 0.64 +0.1
371,832 - ABZR87_RS01745 0.64 -0.1
371,832 - ABZR87_RS01745 0.64 -2.5
372,191 - -3.6
372,247 - ABZR87_RS01750 0.13 +0.6
372,247 - ABZR87_RS01750 0.13 -0.6
372,373 + ABZR87_RS01750 0.21 -3.3
372,374 - ABZR87_RS01750 0.21 +2.0
372,374 - ABZR87_RS01750 0.21 -0.6
372,374 - ABZR87_RS01750 0.21 +1.6
372,374 - ABZR87_RS01750 0.21 -2.7
372,375 + ABZR87_RS01750 0.21 -0.7
372,375 + ABZR87_RS01750 0.21 -0.8
372,375 + ABZR87_RS01750 0.21 -1.3
372,375 + ABZR87_RS01750 0.21 -0.7
372,375 + ABZR87_RS01750 0.21 +0.6
372,375 + ABZR87_RS01750 0.21 +0.3
372,375 + ABZR87_RS01750 0.21 -0.6
372,376 - ABZR87_RS01750 0.21 +1.6
372,376 - ABZR87_RS01750 0.21 +0.4
372,376 - ABZR87_RS01750 0.21 +0.5
372,376 - ABZR87_RS01750 0.21 +0.8
372,376 - ABZR87_RS01750 0.21 -1.5
372,750 + ABZR87_RS01750 0.44 -0.5
372,750 + ABZR87_RS01750 0.44 +0.4
372,751 - ABZR87_RS01750 0.44 -3.1
373,011 + ABZR87_RS01750 0.60 -0.4
373,347 + ABZR87_RS01750 0.81 -1.6
373,347 + ABZR87_RS01750 0.81 -0.6
373,348 - ABZR87_RS01750 0.81 -2.7
373,704 + +0.5
373,705 - -0.8
373,861 + -2.5
373,861 + -1.4
373,881 + +1.5
373,881 + -1.5
373,881 + -0.6
373,881 + -1.5
373,881 + -0.1
373,882 - +0.4
373,882 - +2.2
373,882 - -0.2
373,882 - -1.4
373,882 - -2.1
373,882 - -0.8
373,882 - -3.0
373,951 + ABZR87_RS01755 0.12 -2.1
374,010 + ABZR87_RS01755 0.15 +0.1
374,011 - ABZR87_RS01755 0.15 +0.3
374,049 + ABZR87_RS01755 0.17 +0.6
374,346 - ABZR87_RS01755 0.32 -0.2

Or see this region's nucleotide sequence