Experiment: Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS01725 and ABZR87_RS01730 are separated by 650 nucleotides ABZR87_RS01730 and ABZR87_RS01735 are separated by 30 nucleotides ABZR87_RS01735 and ABZR87_RS01740 are separated by 36 nucleotides
ABZR87_RS01725: ABZR87_RS01725 - ribonucleoside-diphosphate reductase subunit alpha, at 362,793 to 365,777
_RS01725
ABZR87_RS01730: ABZR87_RS01730 - alkaline phosphatase family protein, at 366,428 to 368,458
_RS01730
ABZR87_RS01735: ABZR87_RS01735 - hypothetical protein, at 368,489 to 368,689
_RS01735
ABZR87_RS01740: ABZR87_RS01740 - phosphocholine-specific phospholipase C, at 368,726 to 370,885
_RS01740
Position (kb) 366
367
368
369 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 365.918 kb on - strand at 365.968 kb on - strand at 365.974 kb on - strand at 365.974 kb on - strand at 365.974 kb on - strand at 365.999 kb on - strand at 365.999 kb on - strand at 366.003 kb on - strand at 366.003 kb on - strand at 366.003 kb on - strand at 366.003 kb on - strand at 366.003 kb on - strand at 366.003 kb on - strand at 366.004 kb on + strand at 366.004 kb on + strand at 366.005 kb on - strand at 366.186 kb on - strand at 366.201 kb on + strand at 366.201 kb on + strand at 366.201 kb on + strand at 366.201 kb on + strand at 366.202 kb on - strand at 366.202 kb on - strand at 366.202 kb on - strand at 366.202 kb on - strand at 366.202 kb on - strand at 366.203 kb on - strand at 366.212 kb on + strand at 366.212 kb on + strand at 366.212 kb on + strand at 366.212 kb on + strand at 366.212 kb on + strand at 366.212 kb on + strand at 366.212 kb on + strand at 366.212 kb on + strand at 366.212 kb on + strand at 366.212 kb on + strand at 366.212 kb on + strand at 366.212 kb on + strand at 366.213 kb on - strand at 366.213 kb on - strand at 366.213 kb on - strand at 366.213 kb on - strand at 366.213 kb on - strand at 366.213 kb on - strand at 366.213 kb on - strand at 366.213 kb on - strand at 366.213 kb on - strand at 366.213 kb on - strand at 366.213 kb on - strand at 366.348 kb on + strand at 366.349 kb on - strand at 366.349 kb on - strand at 366.423 kb on + strand at 366.502 kb on + strand at 366.502 kb on + strand at 366.502 kb on + strand at 366.503 kb on - strand at 366.503 kb on - strand at 366.503 kb on - strand at 366.503 kb on - strand at 366.503 kb on - strand at 366.620 kb on + strand at 366.620 kb on + strand at 366.620 kb on + strand at 366.620 kb on + strand at 366.620 kb on + strand at 366.620 kb on + strand at 366.620 kb on + strand at 366.621 kb on - strand at 366.621 kb on - strand at 366.621 kb on - strand at 366.621 kb on - strand at 366.621 kb on - strand at 366.621 kb on - strand at 366.621 kb on - strand at 366.621 kb on - strand at 366.621 kb on - strand at 367.022 kb on + strand, within ABZR87_RS01730 at 367.022 kb on + strand, within ABZR87_RS01730 at 367.023 kb on - strand, within ABZR87_RS01730 at 367.043 kb on + strand, within ABZR87_RS01730 at 367.043 kb on + strand, within ABZR87_RS01730 at 367.043 kb on + strand, within ABZR87_RS01730 at 367.043 kb on + strand, within ABZR87_RS01730 at 367.044 kb on - strand, within ABZR87_RS01730 at 367.044 kb on - strand, within ABZR87_RS01730 at 367.044 kb on - strand, within ABZR87_RS01730 at 367.094 kb on + strand, within ABZR87_RS01730 at 367.094 kb on + strand, within ABZR87_RS01730 at 367.094 kb on + strand, within ABZR87_RS01730 at 367.094 kb on + strand, within ABZR87_RS01730 at 367.095 kb on - strand, within ABZR87_RS01730 at 367.095 kb on - strand, within ABZR87_RS01730 at 367.095 kb on - strand, within ABZR87_RS01730 at 367.408 kb on - strand, within ABZR87_RS01730 at 367.493 kb on + strand, within ABZR87_RS01730 at 367.493 kb on + strand, within ABZR87_RS01730 at 367.493 kb on + strand, within ABZR87_RS01730 at 367.494 kb on - strand, within ABZR87_RS01730 at 367.494 kb on - strand, within ABZR87_RS01730 at 367.494 kb on - strand, within ABZR87_RS01730 at 367.494 kb on - strand, within ABZR87_RS01730 at 367.604 kb on + strand, within ABZR87_RS01730 at 367.604 kb on + strand, within ABZR87_RS01730 at 367.604 kb on + strand, within ABZR87_RS01730 at 367.604 kb on + strand, within ABZR87_RS01730 at 367.605 kb on - strand, within ABZR87_RS01730 at 367.605 kb on - strand, within ABZR87_RS01730 at 367.605 kb on - strand, within ABZR87_RS01730 at 367.640 kb on + strand, within ABZR87_RS01730 at 367.640 kb on + strand, within ABZR87_RS01730 at 367.641 kb on - strand, within ABZR87_RS01730 at 367.641 kb on - strand, within ABZR87_RS01730 at 367.652 kb on + strand, within ABZR87_RS01730 at 367.653 kb on - strand, within ABZR87_RS01730 at 367.653 kb on - strand, within ABZR87_RS01730 at 367.653 kb on - strand, within ABZR87_RS01730 at 367.653 kb on - strand, within ABZR87_RS01730 at 367.653 kb on - strand, within ABZR87_RS01730 at 367.703 kb on + strand, within ABZR87_RS01730 at 367.703 kb on + strand, within ABZR87_RS01730 at 367.754 kb on + strand, within ABZR87_RS01730 at 367.754 kb on + strand, within ABZR87_RS01730 at 367.755 kb on - strand, within ABZR87_RS01730 at 367.755 kb on - strand, within ABZR87_RS01730 at 367.755 kb on - strand, within ABZR87_RS01730 at 367.755 kb on - strand, within ABZR87_RS01730 at 367.755 kb on - strand, within ABZR87_RS01730 at 367.757 kb on + strand, within ABZR87_RS01730 at 367.757 kb on + strand, within ABZR87_RS01730 at 367.757 kb on + strand, within ABZR87_RS01730 at 367.758 kb on - strand, within ABZR87_RS01730 at 367.758 kb on - strand, within ABZR87_RS01730 at 367.758 kb on - strand, within ABZR87_RS01730 at 367.898 kb on + strand, within ABZR87_RS01730 at 367.898 kb on + strand, within ABZR87_RS01730 at 367.899 kb on - strand, within ABZR87_RS01730 at 367.899 kb on - strand, within ABZR87_RS01730 at 368.021 kb on + strand, within ABZR87_RS01730 at 368.021 kb on + strand, within ABZR87_RS01730 at 368.021 kb on + strand, within ABZR87_RS01730 at 368.021 kb on + strand, within ABZR87_RS01730 at 368.021 kb on + strand, within ABZR87_RS01730 at 368.022 kb on - strand, within ABZR87_RS01730 at 368.022 kb on - strand, within ABZR87_RS01730 at 368.022 kb on - strand, within ABZR87_RS01730 at 368.022 kb on - strand, within ABZR87_RS01730 at 368.022 kb on - strand, within ABZR87_RS01730 at 368.022 kb on - strand, within ABZR87_RS01730 at 368.022 kb on - strand, within ABZR87_RS01730 at 368.022 kb on - strand, within ABZR87_RS01730 at 368.151 kb on - strand, within ABZR87_RS01730 at 368.151 kb on - strand, within ABZR87_RS01730 at 368.195 kb on + strand, within ABZR87_RS01730 at 368.195 kb on + strand, within ABZR87_RS01730 at 368.195 kb on + strand, within ABZR87_RS01730 at 368.195 kb on + strand, within ABZR87_RS01730 at 368.195 kb on + strand, within ABZR87_RS01730 at 368.195 kb on + strand, within ABZR87_RS01730 at 368.195 kb on + strand, within ABZR87_RS01730 at 368.195 kb on + strand, within ABZR87_RS01730 at 368.196 kb on - strand, within ABZR87_RS01730 at 368.196 kb on - strand, within ABZR87_RS01730 at 368.321 kb on + strand at 368.321 kb on + strand at 368.321 kb on + strand at 368.321 kb on + strand at 368.321 kb on + strand at 368.322 kb on - strand at 368.322 kb on - strand at 368.322 kb on - strand at 368.322 kb on - strand at 368.322 kb on - strand at 368.322 kb on - strand at 368.322 kb on - strand at 368.322 kb on - strand at 368.322 kb on - strand at 368.322 kb on - strand at 368.322 kb on - strand at 368.322 kb on - strand at 368.322 kb on - strand at 368.363 kb on + strand at 368.364 kb on - strand at 368.364 kb on - strand at 368.364 kb on - strand at 368.936 kb on + strand at 368.936 kb on + strand at 368.936 kb on + strand at 368.936 kb on + strand at 368.936 kb on + strand at 368.936 kb on + strand at 368.937 kb on - strand at 368.937 kb on - strand at 369.023 kb on + strand, within ABZR87_RS01740 at 369.023 kb on + strand, within ABZR87_RS01740 at 369.023 kb on + strand, within ABZR87_RS01740 at 369.023 kb on + strand, within ABZR87_RS01740 at 369.023 kb on + strand, within ABZR87_RS01740 at 369.023 kb on + strand, within ABZR87_RS01740 at 369.023 kb on + strand, within ABZR87_RS01740 at 369.023 kb on + strand, within ABZR87_RS01740 at 369.023 kb on + strand, within ABZR87_RS01740 at 369.023 kb on + strand, within ABZR87_RS01740 at 369.023 kb on + strand, within ABZR87_RS01740 at 369.023 kb on + strand, within ABZR87_RS01740 at 369.024 kb on - strand, within ABZR87_RS01740 at 369.024 kb on - strand, within ABZR87_RS01740 at 369.024 kb on - strand, within ABZR87_RS01740 at 369.062 kb on + strand, within ABZR87_RS01740 at 369.063 kb on - strand, within ABZR87_RS01740 at 369.066 kb on - strand, within ABZR87_RS01740 at 369.066 kb on - strand, within ABZR87_RS01740 at 369.119 kb on + strand, within ABZR87_RS01740 at 369.173 kb on + strand, within ABZR87_RS01740 at 369.173 kb on + strand, within ABZR87_RS01740 at 369.173 kb on + strand, within ABZR87_RS01740 at 369.173 kb on + strand, within ABZR87_RS01740 at 369.173 kb on + strand, within ABZR87_RS01740 at 369.174 kb on - strand, within ABZR87_RS01740 at 369.174 kb on - strand, within ABZR87_RS01740 at 369.197 kb on + strand, within ABZR87_RS01740 at 369.198 kb on - strand, within ABZR87_RS01740 at 369.200 kb on + strand, within ABZR87_RS01740 at 369.200 kb on + strand, within ABZR87_RS01740 at 369.200 kb on + strand, within ABZR87_RS01740 at 369.200 kb on + strand, within ABZR87_RS01740 at 369.200 kb on + strand, within ABZR87_RS01740 at 369.201 kb on - strand, within ABZR87_RS01740 at 369.201 kb on - strand, within ABZR87_RS01740 at 369.201 kb on - strand, within ABZR87_RS01740 at 369.201 kb on - strand, within ABZR87_RS01740 at 369.201 kb on - strand, within ABZR87_RS01740 at 369.201 kb on - strand, within ABZR87_RS01740 at 369.201 kb on - strand, within ABZR87_RS01740 at 369.201 kb on - strand, within ABZR87_RS01740 at 369.263 kb on + strand, within ABZR87_RS01740 at 369.264 kb on - strand, within ABZR87_RS01740 at 369.264 kb on - strand, within ABZR87_RS01740 at 369.396 kb on - strand, within ABZR87_RS01740 at 369.396 kb on - strand, within ABZR87_RS01740 at 369.396 kb on - strand, within ABZR87_RS01740 at 369.411 kb on - strand, within ABZR87_RS01740
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB remove 365,918 - +2.9 365,968 - +0.8 365,974 - -1.3 365,974 - -2.5 365,974 - -1.4 365,999 - +1.4 365,999 - -2.1 366,003 - +1.1 366,003 - -0.4 366,003 - +1.0 366,003 - +3.3 366,003 - -1.1 366,003 - +1.6 366,004 + +0.7 366,004 + -0.2 366,005 - -0.4 366,186 - -1.3 366,201 + -1.3 366,201 + -0.9 366,201 + +0.4 366,201 + +0.9 366,202 - +1.6 366,202 - -0.7 366,202 - +0.6 366,202 - -0.4 366,202 - +1.1 366,203 - -1.2 366,212 + -0.1 366,212 + +1.7 366,212 + -0.4 366,212 + -0.8 366,212 + -1.8 366,212 + +2.7 366,212 + +1.1 366,212 + -0.2 366,212 + +0.3 366,212 + +1.4 366,212 + -1.0 366,212 + -0.1 366,213 - -0.8 366,213 - -2.2 366,213 - -1.3 366,213 - +1.6 366,213 - -1.2 366,213 - -0.2 366,213 - +1.7 366,213 - +0.5 366,213 - +0.7 366,213 - -0.7 366,213 - -1.1 366,348 + +0.8 366,349 - -0.5 366,349 - +0.3 366,423 + -1.3 366,502 + -0.0 366,502 + -2.4 366,502 + +0.4 366,503 - +0.4 366,503 - -0.6 366,503 - -1.6 366,503 - -0.7 366,503 - -0.4 366,620 + +0.2 366,620 + -2.0 366,620 + -0.4 366,620 + +0.2 366,620 + -1.9 366,620 + +0.8 366,620 + +1.0 366,621 - +1.0 366,621 - -0.5 366,621 - -0.2 366,621 - -0.7 366,621 - +0.2 366,621 - -1.7 366,621 - +0.4 366,621 - +0.7 366,621 - +1.0 367,022 + ABZR87_RS01730 0.29 -1.3 367,022 + ABZR87_RS01730 0.29 -0.2 367,023 - ABZR87_RS01730 0.29 +0.4 367,043 + ABZR87_RS01730 0.30 -0.4 367,043 + ABZR87_RS01730 0.30 -0.1 367,043 + ABZR87_RS01730 0.30 +1.4 367,043 + ABZR87_RS01730 0.30 +0.1 367,044 - ABZR87_RS01730 0.30 -1.8 367,044 - ABZR87_RS01730 0.30 -1.4 367,044 - ABZR87_RS01730 0.30 +3.1 367,094 + ABZR87_RS01730 0.33 +0.1 367,094 + ABZR87_RS01730 0.33 -0.5 367,094 + ABZR87_RS01730 0.33 -1.3 367,094 + ABZR87_RS01730 0.33 -0.3 367,095 - ABZR87_RS01730 0.33 +0.2 367,095 - ABZR87_RS01730 0.33 -0.4 367,095 - ABZR87_RS01730 0.33 -1.8 367,408 - ABZR87_RS01730 0.48 +0.5 367,493 + ABZR87_RS01730 0.52 +1.7 367,493 + ABZR87_RS01730 0.52 +0.1 367,493 + ABZR87_RS01730 0.52 -0.5 367,494 - ABZR87_RS01730 0.52 -0.7 367,494 - ABZR87_RS01730 0.52 -1.2 367,494 - ABZR87_RS01730 0.52 -0.3 367,494 - ABZR87_RS01730 0.52 -0.6 367,604 + ABZR87_RS01730 0.58 -1.0 367,604 + ABZR87_RS01730 0.58 -0.4 367,604 + ABZR87_RS01730 0.58 -2.5 367,604 + ABZR87_RS01730 0.58 -2.3 367,605 - ABZR87_RS01730 0.58 +0.2 367,605 - ABZR87_RS01730 0.58 -0.2 367,605 - ABZR87_RS01730 0.58 -2.4 367,640 + ABZR87_RS01730 0.60 -1.9 367,640 + ABZR87_RS01730 0.60 +3.3 367,641 - ABZR87_RS01730 0.60 -2.7 367,641 - ABZR87_RS01730 0.60 -2.3 367,652 + ABZR87_RS01730 0.60 +0.7 367,653 - ABZR87_RS01730 0.60 +1.0 367,653 - ABZR87_RS01730 0.60 +0.3 367,653 - ABZR87_RS01730 0.60 -0.2 367,653 - ABZR87_RS01730 0.60 -0.3 367,653 - ABZR87_RS01730 0.60 +0.0 367,703 + ABZR87_RS01730 0.63 +1.2 367,703 + ABZR87_RS01730 0.63 +0.9 367,754 + ABZR87_RS01730 0.65 +0.7 367,754 + ABZR87_RS01730 0.65 +0.8 367,755 - ABZR87_RS01730 0.65 +1.9 367,755 - ABZR87_RS01730 0.65 -0.1 367,755 - ABZR87_RS01730 0.65 +0.7 367,755 - ABZR87_RS01730 0.65 +0.5 367,755 - ABZR87_RS01730 0.65 -0.3 367,757 + ABZR87_RS01730 0.65 +1.1 367,757 + ABZR87_RS01730 0.65 +1.0 367,757 + ABZR87_RS01730 0.65 -2.5 367,758 - ABZR87_RS01730 0.65 +0.3 367,758 - ABZR87_RS01730 0.65 -0.6 367,758 - ABZR87_RS01730 0.65 +1.8 367,898 + ABZR87_RS01730 0.72 -0.0 367,898 + ABZR87_RS01730 0.72 -0.3 367,899 - ABZR87_RS01730 0.72 -2.5 367,899 - ABZR87_RS01730 0.72 +0.4 368,021 + ABZR87_RS01730 0.78 -0.3 368,021 + ABZR87_RS01730 0.78 +1.0 368,021 + ABZR87_RS01730 0.78 -0.4 368,021 + ABZR87_RS01730 0.78 -0.2 368,021 + ABZR87_RS01730 0.78 +0.7 368,022 - ABZR87_RS01730 0.78 +1.3 368,022 - ABZR87_RS01730 0.78 +1.2 368,022 - ABZR87_RS01730 0.78 -0.0 368,022 - ABZR87_RS01730 0.78 +0.2 368,022 - ABZR87_RS01730 0.78 -3.3 368,022 - ABZR87_RS01730 0.78 -1.3 368,022 - ABZR87_RS01730 0.78 -0.9 368,022 - ABZR87_RS01730 0.78 -0.6 368,151 - ABZR87_RS01730 0.85 -0.5 368,151 - ABZR87_RS01730 0.85 +2.6 368,195 + ABZR87_RS01730 0.87 -2.0 368,195 + ABZR87_RS01730 0.87 +0.0 368,195 + ABZR87_RS01730 0.87 -1.2 368,195 + ABZR87_RS01730 0.87 -0.5 368,195 + ABZR87_RS01730 0.87 -2.7 368,195 + ABZR87_RS01730 0.87 -2.6 368,195 + ABZR87_RS01730 0.87 +3.1 368,195 + ABZR87_RS01730 0.87 +0.2 368,196 - ABZR87_RS01730 0.87 +0.5 368,196 - ABZR87_RS01730 0.87 -1.3 368,321 + -0.4 368,321 + -2.3 368,321 + +1.9 368,321 + -1.3 368,321 + +0.4 368,322 - -1.4 368,322 - +0.9 368,322 - +0.1 368,322 - -1.0 368,322 - +0.6 368,322 - +0.2 368,322 - -0.4 368,322 - -2.8 368,322 - -0.4 368,322 - -0.1 368,322 - +0.4 368,322 - -1.2 368,322 - -1.8 368,363 + +1.8 368,364 - -0.6 368,364 - +0.4 368,364 - -0.0 368,936 + +0.3 368,936 + -0.2 368,936 + +2.2 368,936 + -1.2 368,936 + +1.9 368,936 + -0.4 368,937 - +0.8 368,937 - -0.5 369,023 + ABZR87_RS01740 0.14 -0.6 369,023 + ABZR87_RS01740 0.14 -1.9 369,023 + ABZR87_RS01740 0.14 -1.9 369,023 + ABZR87_RS01740 0.14 -1.3 369,023 + ABZR87_RS01740 0.14 -0.1 369,023 + ABZR87_RS01740 0.14 -0.6 369,023 + ABZR87_RS01740 0.14 -0.3 369,023 + ABZR87_RS01740 0.14 +0.2 369,023 + ABZR87_RS01740 0.14 -0.4 369,023 + ABZR87_RS01740 0.14 +0.8 369,023 + ABZR87_RS01740 0.14 -3.0 369,023 + ABZR87_RS01740 0.14 -2.0 369,024 - ABZR87_RS01740 0.14 +0.3 369,024 - ABZR87_RS01740 0.14 +1.0 369,024 - ABZR87_RS01740 0.14 -0.8 369,062 + ABZR87_RS01740 0.16 -1.3 369,063 - ABZR87_RS01740 0.16 +0.5 369,066 - ABZR87_RS01740 0.16 -2.8 369,066 - ABZR87_RS01740 0.16 +1.9 369,119 + ABZR87_RS01740 0.18 +1.3 369,173 + ABZR87_RS01740 0.21 +0.3 369,173 + ABZR87_RS01740 0.21 -1.3 369,173 + ABZR87_RS01740 0.21 +3.6 369,173 + ABZR87_RS01740 0.21 +1.8 369,173 + ABZR87_RS01740 0.21 -3.2 369,174 - ABZR87_RS01740 0.21 -1.7 369,174 - ABZR87_RS01740 0.21 -1.5 369,197 + ABZR87_RS01740 0.22 -0.2 369,198 - ABZR87_RS01740 0.22 +1.7 369,200 + ABZR87_RS01740 0.22 -0.6 369,200 + ABZR87_RS01740 0.22 +0.8 369,200 + ABZR87_RS01740 0.22 +0.8 369,200 + ABZR87_RS01740 0.22 +0.5 369,200 + ABZR87_RS01740 0.22 +0.7 369,201 - ABZR87_RS01740 0.22 -3.1 369,201 - ABZR87_RS01740 0.22 +1.7 369,201 - ABZR87_RS01740 0.22 -0.6 369,201 - ABZR87_RS01740 0.22 -1.5 369,201 - ABZR87_RS01740 0.22 +1.0 369,201 - ABZR87_RS01740 0.22 -0.3 369,201 - ABZR87_RS01740 0.22 -0.4 369,201 - ABZR87_RS01740 0.22 -0.1 369,263 + ABZR87_RS01740 0.25 +1.1 369,264 - ABZR87_RS01740 0.25 -0.2 369,264 - ABZR87_RS01740 0.25 -0.2 369,396 - ABZR87_RS01740 0.31 +0.8 369,396 - ABZR87_RS01740 0.31 +3.2 369,396 - ABZR87_RS01740 0.31 +0.9 369,411 - ABZR87_RS01740 0.32 +0.3
Or see this region's nucleotide sequence