Experiment: Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS01550 and ABZR87_RS01555 are separated by 101 nucleotides ABZR87_RS01555 and ABZR87_RS01560 overlap by 4 nucleotides ABZR87_RS01560 and ABZR87_RS01565 are separated by 473 nucleotides
ABZR87_RS01550: ABZR87_RS01550 - L-arabinose ABC transporter permease AraH, at 326,649 to 327,659
_RS01550
ABZR87_RS01555: ABZR87_RS01555 - barstar family protein, at 327,761 to 328,384
_RS01555
ABZR87_RS01560: ABZR87_RS01560 - ribonuclease domain-containing protein, at 328,381 to 328,812
_RS01560
ABZR87_RS01565: ABZR87_RS01565 - NADP-dependent malic enzyme, at 329,286 to 331,631
_RS01565
Position (kb) 327
328
329 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4
5
6
7 at 326.975 kb on + strand, within ABZR87_RS01550 at 326.975 kb on + strand, within ABZR87_RS01550 at 326.975 kb on + strand, within ABZR87_RS01550 at 326.976 kb on - strand, within ABZR87_RS01550 at 327.054 kb on + strand, within ABZR87_RS01550 at 327.055 kb on - strand, within ABZR87_RS01550 at 327.198 kb on + strand, within ABZR87_RS01550 at 327.579 kb on + strand at 327.579 kb on + strand at 327.579 kb on + strand at 327.579 kb on + strand at 327.579 kb on + strand at 327.579 kb on + strand at 327.579 kb on + strand at 327.579 kb on + strand at 327.579 kb on + strand at 327.579 kb on + strand at 327.579 kb on + strand at 327.579 kb on + strand at 327.580 kb on - strand at 327.580 kb on - strand at 327.580 kb on - strand at 327.580 kb on - strand at 327.580 kb on - strand at 327.580 kb on - strand at 327.585 kb on + strand at 327.585 kb on + strand at 327.586 kb on - strand at 327.586 kb on - strand at 327.586 kb on - strand at 328.294 kb on - strand, within ABZR87_RS01555 at 328.294 kb on - strand, within ABZR87_RS01555 at 328.390 kb on + strand at 328.409 kb on + strand at 328.409 kb on + strand at 328.410 kb on - strand at 328.410 kb on - strand at 328.410 kb on - strand at 328.425 kb on - strand, within ABZR87_RS01560 at 328.425 kb on - strand, within ABZR87_RS01560 at 328.425 kb on - strand, within ABZR87_RS01560 at 328.425 kb on - strand, within ABZR87_RS01560 at 328.425 kb on - strand, within ABZR87_RS01560 at 328.427 kb on + strand, within ABZR87_RS01560 at 328.428 kb on - strand, within ABZR87_RS01560 at 328.428 kb on - strand, within ABZR87_RS01560 at 328.521 kb on - strand, within ABZR87_RS01560 at 328.521 kb on - strand, within ABZR87_RS01560 at 328.556 kb on + strand, within ABZR87_RS01560 at 328.557 kb on - strand, within ABZR87_RS01560 at 328.557 kb on - strand, within ABZR87_RS01560 at 328.557 kb on - strand, within ABZR87_RS01560 at 328.586 kb on + strand, within ABZR87_RS01560 at 328.587 kb on - strand, within ABZR87_RS01560 at 328.774 kb on + strand at 328.775 kb on - strand at 328.775 kb on - strand at 328.775 kb on - strand at 328.884 kb on + strand at 328.885 kb on - strand at 328.885 kb on - strand at 329.354 kb on + strand at 329.355 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB remove 326,975 + ABZR87_RS01550 0.32 -0.5 326,975 + ABZR87_RS01550 0.32 -0.5 326,975 + ABZR87_RS01550 0.32 -1.0 326,976 - ABZR87_RS01550 0.32 -0.0 327,054 + ABZR87_RS01550 0.40 +1.1 327,055 - ABZR87_RS01550 0.40 +2.9 327,198 + ABZR87_RS01550 0.54 -0.1 327,579 + +1.3 327,579 + -0.0 327,579 + +1.3 327,579 + +0.3 327,579 + -1.6 327,579 + -1.0 327,579 + -1.2 327,579 + -1.2 327,579 + -0.8 327,579 + +0.2 327,579 + -1.8 327,579 + +0.1 327,580 - +2.0 327,580 - -0.4 327,580 - -0.2 327,580 - +1.3 327,580 - -0.9 327,580 - +1.0 327,585 + -0.1 327,585 + -1.1 327,586 - +0.9 327,586 - -0.8 327,586 - +4.9 328,294 - ABZR87_RS01555 0.85 -0.5 328,294 - ABZR87_RS01555 0.85 +0.4 328,390 + +1.7 328,409 + +3.3 328,409 + +1.3 328,410 - +2.6 328,410 - +0.2 328,410 - +0.6 328,425 - ABZR87_RS01560 0.10 +7.1 328,425 - ABZR87_RS01560 0.10 +1.0 328,425 - ABZR87_RS01560 0.10 +1.4 328,425 - ABZR87_RS01560 0.10 -1.6 328,425 - ABZR87_RS01560 0.10 -0.6 328,427 + ABZR87_RS01560 0.11 +2.3 328,428 - ABZR87_RS01560 0.11 +1.1 328,428 - ABZR87_RS01560 0.11 +1.5 328,521 - ABZR87_RS01560 0.32 +0.5 328,521 - ABZR87_RS01560 0.32 -0.7 328,556 + ABZR87_RS01560 0.41 +1.0 328,557 - ABZR87_RS01560 0.41 +0.7 328,557 - ABZR87_RS01560 0.41 +4.2 328,557 - ABZR87_RS01560 0.41 -0.2 328,586 + ABZR87_RS01560 0.47 +3.3 328,587 - ABZR87_RS01560 0.48 -0.3 328,774 + +0.7 328,775 - +1.1 328,775 - +0.0 328,775 - -0.1 328,884 + +1.3 328,885 - +0.6 328,885 - +0.0 329,354 + -0.5 329,355 - -0.3
Or see this region's nucleotide sequence