Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS01315

Experiment: Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS01305 and ABZR87_RS01310 are separated by 99 nucleotidesABZR87_RS01310 and ABZR87_RS01315 are separated by 263 nucleotidesABZR87_RS01315 and ABZR87_RS01320 are separated by 239 nucleotidesABZR87_RS01320 and ABZR87_RS01325 are separated by 20 nucleotides ABZR87_RS01305: ABZR87_RS01305 - YceI family protein, at 272,216 to 272,788 _RS01305 ABZR87_RS01310: ABZR87_RS01310 - cytochrome b, at 272,888 to 273,469 _RS01310 ABZR87_RS01315: ABZR87_RS01315 - adenylosuccinate lyase, at 273,733 to 275,106 _RS01315 ABZR87_RS01320: ABZR87_RS01320 - glutathione S-transferase, at 275,346 to 275,954 _RS01320 ABZR87_RS01325: ABZR87_RS01325 - FMN-binding glutamate synthase family protein, at 275,975 to 277,573 _RS01325 Position (kb) 273 274 275 276Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4 5at 273.078 kb on + strand, within ABZR87_RS01310at 273.078 kb on + strand, within ABZR87_RS01310at 273.078 kb on + strand, within ABZR87_RS01310at 273.078 kb on + strand, within ABZR87_RS01310at 273.079 kb on - strand, within ABZR87_RS01310at 273.079 kb on - strand, within ABZR87_RS01310at 273.079 kb on - strand, within ABZR87_RS01310at 273.079 kb on - strand, within ABZR87_RS01310at 273.079 kb on - strand, within ABZR87_RS01310at 273.114 kb on + strand, within ABZR87_RS01310at 273.114 kb on + strand, within ABZR87_RS01310at 273.147 kb on + strand, within ABZR87_RS01310at 273.147 kb on + strand, within ABZR87_RS01310at 273.148 kb on - strand, within ABZR87_RS01310at 273.148 kb on - strand, within ABZR87_RS01310at 273.148 kb on - strand, within ABZR87_RS01310at 273.148 kb on - strand, within ABZR87_RS01310at 273.148 kb on - strand, within ABZR87_RS01310at 273.148 kb on - strand, within ABZR87_RS01310at 273.288 kb on + strand, within ABZR87_RS01310at 273.288 kb on + strand, within ABZR87_RS01310at 273.289 kb on - strand, within ABZR87_RS01310at 273.289 kb on - strand, within ABZR87_RS01310at 273.316 kb on + strand, within ABZR87_RS01310at 273.316 kb on + strand, within ABZR87_RS01310at 273.317 kb on - strand, within ABZR87_RS01310at 273.339 kb on + strand, within ABZR87_RS01310at 273.339 kb on + strand, within ABZR87_RS01310at 273.339 kb on + strand, within ABZR87_RS01310at 273.339 kb on + strand, within ABZR87_RS01310at 273.339 kb on + strand, within ABZR87_RS01310at 273.339 kb on + strand, within ABZR87_RS01310at 273.339 kb on + strand, within ABZR87_RS01310at 273.339 kb on + strand, within ABZR87_RS01310at 273.340 kb on - strand, within ABZR87_RS01310at 273.340 kb on - strand, within ABZR87_RS01310at 273.340 kb on - strand, within ABZR87_RS01310at 273.340 kb on - strand, within ABZR87_RS01310at 273.340 kb on - strand, within ABZR87_RS01310at 273.340 kb on - strand, within ABZR87_RS01310at 273.340 kb on - strand, within ABZR87_RS01310at 273.409 kb on + strand, within ABZR87_RS01310at 273.409 kb on + strand, within ABZR87_RS01310at 273.410 kb on - strand, within ABZR87_RS01310at 273.410 kb on - strand, within ABZR87_RS01310at 273.411 kb on + strandat 273.482 kb on + strandat 273.545 kb on + strandat 273.545 kb on + strandat 273.545 kb on + strandat 273.546 kb on - strandat 273.546 kb on - strandat 273.546 kb on - strandat 273.546 kb on - strandat 273.655 kb on + strandat 273.711 kb on + strandat 273.742 kb on - strandat 275.185 kb on - strandat 275.249 kb on + strandat 275.318 kb on - strandat 275.319 kb on + strandat 275.319 kb on + strandat 275.319 kb on + strandat 275.320 kb on - strandat 275.320 kb on - strandat 275.320 kb on - strandat 275.320 kb on - strandat 275.320 kb on - strandat 275.345 kb on + strandat 275.345 kb on + strandat 275.345 kb on + strandat 275.345 kb on + strandat 275.346 kb on - strandat 275.377 kb on - strandat 275.377 kb on - strandat 275.421 kb on + strand, within ABZR87_RS01320at 275.422 kb on - strand, within ABZR87_RS01320at 275.456 kb on + strand, within ABZR87_RS01320at 275.456 kb on + strand, within ABZR87_RS01320at 275.457 kb on - strand, within ABZR87_RS01320at 275.457 kb on - strand, within ABZR87_RS01320at 275.457 kb on - strand, within ABZR87_RS01320at 275.457 kb on - strand, within ABZR87_RS01320at 275.457 kb on - strand, within ABZR87_RS01320at 275.678 kb on + strand, within ABZR87_RS01320at 275.678 kb on + strand, within ABZR87_RS01320at 275.678 kb on + strand, within ABZR87_RS01320at 275.678 kb on + strand, within ABZR87_RS01320at 275.679 kb on - strand, within ABZR87_RS01320at 275.679 kb on - strand, within ABZR87_RS01320at 275.679 kb on - strand, within ABZR87_RS01320at 275.679 kb on - strand, within ABZR87_RS01320at 275.841 kb on + strand, within ABZR87_RS01320at 275.904 kb on + strandat 275.904 kb on + strandat 275.904 kb on + strandat 275.904 kb on + strandat 275.976 kb on + strandat 275.977 kb on - strandat 276.022 kb on - strandat 276.030 kb on + strandat 276.030 kb on + strandat 276.030 kb on + strandat 276.030 kb on + strandat 276.030 kb on + strandat 276.031 kb on - strandat 276.031 kb on - strandat 276.078 kb on + strandat 276.079 kb on - strandat 276.079 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB
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273,078 + ABZR87_RS01310 0.33 -0.9
273,078 + ABZR87_RS01310 0.33 -2.0
273,078 + ABZR87_RS01310 0.33 +1.4
273,078 + ABZR87_RS01310 0.33 -0.9
273,079 - ABZR87_RS01310 0.33 -1.1
273,079 - ABZR87_RS01310 0.33 +0.6
273,079 - ABZR87_RS01310 0.33 +0.1
273,079 - ABZR87_RS01310 0.33 +0.3
273,079 - ABZR87_RS01310 0.33 +0.2
273,114 + ABZR87_RS01310 0.39 +0.8
273,114 + ABZR87_RS01310 0.39 -0.7
273,147 + ABZR87_RS01310 0.45 -1.5
273,147 + ABZR87_RS01310 0.45 +3.5
273,148 - ABZR87_RS01310 0.45 +1.4
273,148 - ABZR87_RS01310 0.45 -2.0
273,148 - ABZR87_RS01310 0.45 -0.8
273,148 - ABZR87_RS01310 0.45 -0.1
273,148 - ABZR87_RS01310 0.45 +1.3
273,148 - ABZR87_RS01310 0.45 -0.2
273,288 + ABZR87_RS01310 0.69 -0.8
273,288 + ABZR87_RS01310 0.69 -1.7
273,289 - ABZR87_RS01310 0.69 -0.2
273,289 - ABZR87_RS01310 0.69 -1.5
273,316 + ABZR87_RS01310 0.74 +1.2
273,316 + ABZR87_RS01310 0.74 -1.4
273,317 - ABZR87_RS01310 0.74 +0.3
273,339 + ABZR87_RS01310 0.77 -0.7
273,339 + ABZR87_RS01310 0.77 -0.2
273,339 + ABZR87_RS01310 0.77 +0.1
273,339 + ABZR87_RS01310 0.77 +1.1
273,339 + ABZR87_RS01310 0.77 +0.8
273,339 + ABZR87_RS01310 0.77 +1.0
273,339 + ABZR87_RS01310 0.77 +0.2
273,339 + ABZR87_RS01310 0.77 +0.1
273,340 - ABZR87_RS01310 0.78 -0.9
273,340 - ABZR87_RS01310 0.78 +1.1
273,340 - ABZR87_RS01310 0.78 +1.6
273,340 - ABZR87_RS01310 0.78 +0.1
273,340 - ABZR87_RS01310 0.78 +0.1
273,340 - ABZR87_RS01310 0.78 -0.0
273,340 - ABZR87_RS01310 0.78 -2.1
273,409 + ABZR87_RS01310 0.90 +1.6
273,409 + ABZR87_RS01310 0.90 +0.6
273,410 - ABZR87_RS01310 0.90 -1.5
273,410 - ABZR87_RS01310 0.90 -2.0
273,411 + -1.0
273,482 + -0.8
273,545 + -1.4
273,545 + +0.4
273,545 + +0.9
273,546 - -2.9
273,546 - +4.8
273,546 - -0.8
273,546 - -2.0
273,655 + +1.0
273,711 + +3.3
273,742 - +0.0
275,185 - +2.1
275,249 + -1.0
275,318 - -2.0
275,319 + +4.1
275,319 + -0.6
275,319 + +0.4
275,320 - +1.2
275,320 - +1.7
275,320 - -0.1
275,320 - -0.3
275,320 - +0.1
275,345 + +1.2
275,345 + -1.8
275,345 + +3.0
275,345 + +1.5
275,346 - -2.2
275,377 - +0.8
275,377 - -0.9
275,421 + ABZR87_RS01320 0.12 +0.5
275,422 - ABZR87_RS01320 0.12 +0.7
275,456 + ABZR87_RS01320 0.18 -1.8
275,456 + ABZR87_RS01320 0.18 -0.5
275,457 - ABZR87_RS01320 0.18 +1.5
275,457 - ABZR87_RS01320 0.18 +1.4
275,457 - ABZR87_RS01320 0.18 +1.0
275,457 - ABZR87_RS01320 0.18 +0.6
275,457 - ABZR87_RS01320 0.18 +2.1
275,678 + ABZR87_RS01320 0.55 +1.9
275,678 + ABZR87_RS01320 0.55 -1.9
275,678 + ABZR87_RS01320 0.55 -0.7
275,678 + ABZR87_RS01320 0.55 +0.4
275,679 - ABZR87_RS01320 0.55 +1.1
275,679 - ABZR87_RS01320 0.55 -0.7
275,679 - ABZR87_RS01320 0.55 +2.9
275,679 - ABZR87_RS01320 0.55 +0.3
275,841 + ABZR87_RS01320 0.81 -1.8
275,904 + +0.8
275,904 + +1.0
275,904 + -0.5
275,904 + -2.1
275,976 + -1.6
275,977 - +0.1
276,022 - -0.5
276,030 + +1.5
276,030 + +0.3
276,030 + -0.6
276,030 + +0.6
276,030 + -0.8
276,031 - +0.8
276,031 - +0.6
276,078 + -2.2
276,079 - +0.3
276,079 - -1.5

Or see this region's nucleotide sequence