Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS00915

Experiment: Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS00900 and ABZR87_RS00905 overlap by 4 nucleotidesABZR87_RS00905 and ABZR87_RS00910 are separated by 38 nucleotidesABZR87_RS00910 and ABZR87_RS00915 are separated by 72 nucleotidesABZR87_RS00915 and ABZR87_RS00920 are separated by 164 nucleotides ABZR87_RS00900: ABZR87_RS00900 - bifunctional DNA-binding transcriptional regulator/O6-methylguanine-DNA methyltransferase Ada, at 180,182 to 181,267 _RS00900 ABZR87_RS00905: ABZR87_RS00905 - Ada metal-binding domain-containing protein, at 181,264 to 181,545 _RS00905 ABZR87_RS00910: ABZR87_RS00910 - hypothetical protein, at 181,584 to 182,033 _RS00910 ABZR87_RS00915: ABZR87_RS00915 - phosphoribosylformylglycinamidine cyclo-ligase, at 182,106 to 183,161 _RS00915 ABZR87_RS00920: ABZR87_RS00920 - AI-2E family transporter, at 183,326 to 184,396 _RS00920 Position (kb) 182 183 184Strain fitness (log2 ratio) -2 -1 0 1 2 3at 181.321 kb on + strand, within ABZR87_RS00905at 181.321 kb on + strand, within ABZR87_RS00905at 181.322 kb on - strand, within ABZR87_RS00905at 181.322 kb on - strand, within ABZR87_RS00905at 181.322 kb on - strand, within ABZR87_RS00905at 181.322 kb on - strand, within ABZR87_RS00905at 181.372 kb on + strand, within ABZR87_RS00905at 181.372 kb on + strand, within ABZR87_RS00905at 181.372 kb on + strand, within ABZR87_RS00905at 181.373 kb on - strand, within ABZR87_RS00905at 181.423 kb on + strand, within ABZR87_RS00905at 181.423 kb on + strand, within ABZR87_RS00905at 181.423 kb on + strand, within ABZR87_RS00905at 181.423 kb on + strand, within ABZR87_RS00905at 181.424 kb on - strand, within ABZR87_RS00905at 181.424 kb on - strand, within ABZR87_RS00905at 181.424 kb on - strand, within ABZR87_RS00905at 181.440 kb on - strand, within ABZR87_RS00905at 181.440 kb on - strand, within ABZR87_RS00905at 181.510 kb on + strand, within ABZR87_RS00905at 181.510 kb on + strand, within ABZR87_RS00905at 181.510 kb on + strand, within ABZR87_RS00905at 181.510 kb on + strand, within ABZR87_RS00905at 181.510 kb on + strand, within ABZR87_RS00905at 181.511 kb on - strand, within ABZR87_RS00905at 181.511 kb on - strand, within ABZR87_RS00905at 181.511 kb on - strand, within ABZR87_RS00905at 181.511 kb on - strand, within ABZR87_RS00905at 181.511 kb on - strand, within ABZR87_RS00905at 181.511 kb on - strand, within ABZR87_RS00905at 181.511 kb on - strand, within ABZR87_RS00905at 181.511 kb on - strand, within ABZR87_RS00905at 181.511 kb on - strand, within ABZR87_RS00905at 181.819 kb on - strand, within ABZR87_RS00910at 181.819 kb on - strand, within ABZR87_RS00910at 181.819 kb on - strand, within ABZR87_RS00910at 182.016 kb on + strandat 182.016 kb on + strandat 182.017 kb on - strandat 182.031 kb on + strandat 182.031 kb on + strandat 182.032 kb on - strandat 182.032 kb on - strandat 183.162 kb on - strandat 183.458 kb on + strand, within ABZR87_RS00920at 183.458 kb on + strand, within ABZR87_RS00920at 183.458 kb on + strand, within ABZR87_RS00920at 183.458 kb on + strand, within ABZR87_RS00920at 183.458 kb on + strand, within ABZR87_RS00920at 183.458 kb on + strand, within ABZR87_RS00920at 183.458 kb on + strand, within ABZR87_RS00920at 183.458 kb on + strand, within ABZR87_RS00920at 183.458 kb on + strand, within ABZR87_RS00920at 183.458 kb on + strand, within ABZR87_RS00920at 183.459 kb on - strand, within ABZR87_RS00920at 183.459 kb on - strand, within ABZR87_RS00920at 183.459 kb on - strand, within ABZR87_RS00920at 183.459 kb on - strand, within ABZR87_RS00920at 183.502 kb on - strand, within ABZR87_RS00920at 183.762 kb on + strand, within ABZR87_RS00920at 183.770 kb on + strand, within ABZR87_RS00920at 183.771 kb on - strand, within ABZR87_RS00920at 183.771 kb on - strand, within ABZR87_RS00920at 183.771 kb on - strand, within ABZR87_RS00920at 183.771 kb on - strand, within ABZR87_RS00920at 183.771 kb on - strand, within ABZR87_RS00920at 183.842 kb on + strand, within ABZR87_RS00920at 183.842 kb on + strand, within ABZR87_RS00920at 183.843 kb on - strand, within ABZR87_RS00920at 183.843 kb on - strand, within ABZR87_RS00920at 183.843 kb on - strand, within ABZR87_RS00920at 183.843 kb on - strand, within ABZR87_RS00920at 183.843 kb on - strand, within ABZR87_RS00920at 183.843 kb on - strand, within ABZR87_RS00920at 183.956 kb on + strand, within ABZR87_RS00920at 183.957 kb on - strand, within ABZR87_RS00920at 183.957 kb on - strand, within ABZR87_RS00920at 183.998 kb on + strand, within ABZR87_RS00920at 183.998 kb on + strand, within ABZR87_RS00920at 183.998 kb on + strand, within ABZR87_RS00920at 183.998 kb on + strand, within ABZR87_RS00920at 183.998 kb on + strand, within ABZR87_RS00920at 183.998 kb on + strand, within ABZR87_RS00920at 183.998 kb on + strand, within ABZR87_RS00920at 183.998 kb on + strand, within ABZR87_RS00920at 183.998 kb on + strand, within ABZR87_RS00920at 183.999 kb on - strand, within ABZR87_RS00920at 183.999 kb on - strand, within ABZR87_RS00920at 183.999 kb on - strand, within ABZR87_RS00920at 183.999 kb on - strand, within ABZR87_RS00920at 183.999 kb on - strand, within ABZR87_RS00920at 184.001 kb on + strand, within ABZR87_RS00920at 184.001 kb on + strand, within ABZR87_RS00920at 184.002 kb on - strand, within ABZR87_RS00920at 184.002 kb on - strand, within ABZR87_RS00920at 184.002 kb on - strand, within ABZR87_RS00920at 184.002 kb on - strand, within ABZR87_RS00920at 184.002 kb on - strand, within ABZR87_RS00920at 184.002 kb on - strand, within ABZR87_RS00920at 184.082 kb on + strand, within ABZR87_RS00920at 184.082 kb on + strand, within ABZR87_RS00920at 184.082 kb on + strand, within ABZR87_RS00920at 184.082 kb on + strand, within ABZR87_RS00920at 184.083 kb on - strand, within ABZR87_RS00920at 184.083 kb on - strand, within ABZR87_RS00920at 184.083 kb on - strand, within ABZR87_RS00920at 184.083 kb on - strand, within ABZR87_RS00920at 184.083 kb on - strand, within ABZR87_RS00920at 184.083 kb on - strand, within ABZR87_RS00920at 184.083 kb on - strand, within ABZR87_RS00920at 184.083 kb on - strand, within ABZR87_RS00920at 184.083 kb on - strand, within ABZR87_RS00920at 184.084 kb on + strand, within ABZR87_RS00920at 184.084 kb on + strand, within ABZR87_RS00920at 184.148 kb on + strand, within ABZR87_RS00920

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB
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181,321 + ABZR87_RS00905 0.20 +0.7
181,321 + ABZR87_RS00905 0.20 +0.6
181,322 - ABZR87_RS00905 0.21 -2.6
181,322 - ABZR87_RS00905 0.21 -0.9
181,322 - ABZR87_RS00905 0.21 -2.6
181,322 - ABZR87_RS00905 0.21 +0.3
181,372 + ABZR87_RS00905 0.38 -0.3
181,372 + ABZR87_RS00905 0.38 -0.1
181,372 + ABZR87_RS00905 0.38 -2.3
181,373 - ABZR87_RS00905 0.39 +0.3
181,423 + ABZR87_RS00905 0.56 -0.2
181,423 + ABZR87_RS00905 0.56 -1.4
181,423 + ABZR87_RS00905 0.56 +0.8
181,423 + ABZR87_RS00905 0.56 -0.9
181,424 - ABZR87_RS00905 0.57 +3.3
181,424 - ABZR87_RS00905 0.57 +0.6
181,424 - ABZR87_RS00905 0.57 +0.2
181,440 - ABZR87_RS00905 0.62 -0.6
181,440 - ABZR87_RS00905 0.62 +1.4
181,510 + ABZR87_RS00905 0.87 +0.3
181,510 + ABZR87_RS00905 0.87 +0.6
181,510 + ABZR87_RS00905 0.87 -0.0
181,510 + ABZR87_RS00905 0.87 -0.3
181,510 + ABZR87_RS00905 0.87 +3.3
181,511 - ABZR87_RS00905 0.88 -2.4
181,511 - ABZR87_RS00905 0.88 -0.4
181,511 - ABZR87_RS00905 0.88 -1.0
181,511 - ABZR87_RS00905 0.88 +0.5
181,511 - ABZR87_RS00905 0.88 +1.6
181,511 - ABZR87_RS00905 0.88 +0.3
181,511 - ABZR87_RS00905 0.88 -0.9
181,511 - ABZR87_RS00905 0.88 +0.9
181,511 - ABZR87_RS00905 0.88 -2.7
181,819 - ABZR87_RS00910 0.52 -0.6
181,819 - ABZR87_RS00910 0.52 -2.3
181,819 - ABZR87_RS00910 0.52 -0.2
182,016 + -0.7
182,016 + +1.7
182,017 - -0.6
182,031 + +0.0
182,031 + +1.2
182,032 - +0.2
182,032 - -1.3
183,162 - +0.7
183,458 + ABZR87_RS00920 0.12 +0.6
183,458 + ABZR87_RS00920 0.12 +0.1
183,458 + ABZR87_RS00920 0.12 +1.5
183,458 + ABZR87_RS00920 0.12 -0.4
183,458 + ABZR87_RS00920 0.12 +0.0
183,458 + ABZR87_RS00920 0.12 +1.1
183,458 + ABZR87_RS00920 0.12 -2.0
183,458 + ABZR87_RS00920 0.12 +0.9
183,458 + ABZR87_RS00920 0.12 +3.1
183,458 + ABZR87_RS00920 0.12 +0.8
183,459 - ABZR87_RS00920 0.12 +1.0
183,459 - ABZR87_RS00920 0.12 +1.6
183,459 - ABZR87_RS00920 0.12 -0.2
183,459 - ABZR87_RS00920 0.12 +1.0
183,502 - ABZR87_RS00920 0.16 -0.0
183,762 + ABZR87_RS00920 0.41 -0.6
183,770 + ABZR87_RS00920 0.41 -1.5
183,771 - ABZR87_RS00920 0.42 +0.5
183,771 - ABZR87_RS00920 0.42 +0.5
183,771 - ABZR87_RS00920 0.42 -0.7
183,771 - ABZR87_RS00920 0.42 -1.2
183,771 - ABZR87_RS00920 0.42 +0.8
183,842 + ABZR87_RS00920 0.48 +3.6
183,842 + ABZR87_RS00920 0.48 +1.1
183,843 - ABZR87_RS00920 0.48 +2.0
183,843 - ABZR87_RS00920 0.48 +1.2
183,843 - ABZR87_RS00920 0.48 +0.3
183,843 - ABZR87_RS00920 0.48 +0.4
183,843 - ABZR87_RS00920 0.48 -1.2
183,843 - ABZR87_RS00920 0.48 -0.5
183,956 + ABZR87_RS00920 0.59 -0.3
183,957 - ABZR87_RS00920 0.59 +1.2
183,957 - ABZR87_RS00920 0.59 -0.0
183,998 + ABZR87_RS00920 0.63 +1.2
183,998 + ABZR87_RS00920 0.63 -1.3
183,998 + ABZR87_RS00920 0.63 +0.5
183,998 + ABZR87_RS00920 0.63 -0.3
183,998 + ABZR87_RS00920 0.63 -0.7
183,998 + ABZR87_RS00920 0.63 +1.2
183,998 + ABZR87_RS00920 0.63 +0.2
183,998 + ABZR87_RS00920 0.63 +1.2
183,998 + ABZR87_RS00920 0.63 +1.7
183,999 - ABZR87_RS00920 0.63 -1.1
183,999 - ABZR87_RS00920 0.63 +0.8
183,999 - ABZR87_RS00920 0.63 +1.4
183,999 - ABZR87_RS00920 0.63 -0.3
183,999 - ABZR87_RS00920 0.63 +0.1
184,001 + ABZR87_RS00920 0.63 -2.1
184,001 + ABZR87_RS00920 0.63 -0.7
184,002 - ABZR87_RS00920 0.63 +0.1
184,002 - ABZR87_RS00920 0.63 -0.2
184,002 - ABZR87_RS00920 0.63 -0.4
184,002 - ABZR87_RS00920 0.63 -1.4
184,002 - ABZR87_RS00920 0.63 -1.0
184,002 - ABZR87_RS00920 0.63 -2.4
184,082 + ABZR87_RS00920 0.71 +0.1
184,082 + ABZR87_RS00920 0.71 -1.1
184,082 + ABZR87_RS00920 0.71 -0.3
184,082 + ABZR87_RS00920 0.71 -1.7
184,083 - ABZR87_RS00920 0.71 +0.8
184,083 - ABZR87_RS00920 0.71 +0.3
184,083 - ABZR87_RS00920 0.71 -0.7
184,083 - ABZR87_RS00920 0.71 -0.2
184,083 - ABZR87_RS00920 0.71 -1.3
184,083 - ABZR87_RS00920 0.71 -0.1
184,083 - ABZR87_RS00920 0.71 +0.8
184,083 - ABZR87_RS00920 0.71 +2.8
184,083 - ABZR87_RS00920 0.71 +1.7
184,084 + ABZR87_RS00920 0.71 -1.9
184,084 + ABZR87_RS00920 0.71 +0.5
184,148 + ABZR87_RS00920 0.77 +3.3

Or see this region's nucleotide sequence